Wall clock time and date at job start Tue Mar 31 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48508 * 109.47112 * 274.98197 * 3 2 1 5 5 H 1.48501 * 109.47121 * 34.97754 * 3 2 1 6 6 H 1.48496 * 109.47425 * 154.98252 * 3 2 1 7 7 C 1.40048 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00276 * 186.15029 * 7 2 1 9 9 C 1.46378 * 119.99676 * 6.15636 * 7 2 1 10 10 O 1.21685 * 120.00113 * 353.93386 * 9 7 2 11 11 N 1.34781 * 119.99722 * 173.93832 * 9 7 2 12 12 C 1.46498 * 119.99418 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.64009 * 35.26209 * 12 11 9 14 14 C 1.53146 * 109.55756 * 274.99654 * 12 11 9 15 15 C 1.53047 * 109.41210 * 181.53416 * 14 12 11 16 16 O 1.43039 * 109.44389 * 59.32628 * 15 14 12 17 17 C 1.42582 * 113.85013 * 301.27512 * 16 15 14 18 18 C 1.53422 * 113.57538 * 286.11493 * 17 16 15 19 19 C 1.53841 * 86.97935 * 270.51930 * 18 17 16 20 20 C 1.50696 * 113.60657 * 220.27680 * 19 18 17 21 21 O 1.20828 * 120.00051 * 97.55527 * 20 19 18 22 22 O 1.34230 * 119.99996 * 277.55854 * 20 19 18 23 23 C 1.53404 * 113.61379 * 188.19616 * 17 16 15 24 24 C 1.52805 * 112.94141 * 57.09907 * 17 16 15 25 25 H 0.97004 * 120.00651 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99958 * 0.02562 * 11 9 7 27 27 H 1.09003 * 109.47728 * 61.55889 * 14 12 11 28 28 H 1.08997 * 109.48407 * 301.51927 * 14 12 11 29 29 H 1.09004 * 109.47361 * 179.31648 * 15 14 12 30 30 H 1.08996 * 109.47735 * 299.32491 * 15 14 12 31 31 H 1.09004 * 113.63145 * 25.04323 * 18 17 16 32 32 H 1.09001 * 113.63130 * 155.99649 * 18 17 16 33 33 H 1.08998 * 113.60256 * 89.39841 * 19 18 17 34 34 H 0.96704 * 117.00110 * 179.97438 * 22 20 19 35 35 H 1.09004 * 113.62704 * 203.96551 * 23 17 16 36 36 H 1.08995 * 113.63429 * 334.83102 * 23 17 16 37 37 H 1.09005 * 109.56316 * 65.88996 * 24 17 16 38 38 H 1.08993 * 109.56730 * 186.11921 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3829 2.1073 -1.3949 5 1 1.4946 2.6200 0.8026 6 1 3.5869 1.4122 0.5921 7 6 2.0069 -1.2128 0.0005 8 1 3.0822 -1.2154 0.1007 9 6 1.2814 -2.4769 -0.1348 10 8 0.0646 -2.4828 -0.1368 11 7 1.9612 -3.6343 -0.2572 12 6 1.2349 -4.8994 -0.3922 13 1 0.3258 -4.7399 -0.9719 14 6 0.8705 -5.4320 0.9967 15 6 0.1458 -6.7724 0.8534 16 8 0.9961 -7.7036 0.1783 17 6 1.4043 -7.2759 -1.1191 18 6 0.2915 -7.3615 -2.1718 19 6 0.7717 -8.7974 -2.4445 20 6 0.7759 -9.1651 -3.9059 21 8 1.8000 -9.0958 -4.5434 22 8 -0.3581 -9.5695 -4.4994 23 6 2.1475 -8.3553 -1.9165 24 6 2.1230 -5.9275 -1.1030 25 1 -0.4851 0.8400 -0.0004 26 1 2.9312 -3.6296 -0.2552 27 1 0.2184 -4.7182 1.5001 28 1 1.7790 -5.5707 1.5827 29 1 -0.1033 -7.1582 1.8420 30 1 -0.7687 -6.6313 0.2774 31 1 -0.7128 -7.3091 -1.7513 32 1 0.4345 -6.6855 -3.0148 33 1 0.2848 -9.5464 -1.8200 34 1 -0.3061 -9.7942 -5.4386 35 1 2.8035 -7.9539 -2.6889 36 1 2.6373 -9.1013 -1.2907 37 1 3.0684 -6.0242 -0.5692 38 1 2.3130 -5.6029 -2.1260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060362.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:34 Heat of formation + Delta-G solvation = -161.217489 kcal Electronic energy + Delta-G solvation = -22672.477727 eV Core-core repulsion = 19094.267846 eV Total energy + Delta-G solvation = -3578.209881 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21040 -39.77561 -37.49064 -36.47073 -35.84462 -34.15055 -32.41946 -30.52125 -29.84622 -26.49915 -26.08826 -25.48687 -23.57178 -21.98166 -20.32476 -19.45768 -19.12252 -18.29507 -17.35776 -16.83827 -16.22057 -15.91638 -15.59138 -15.36069 -14.56891 -14.54732 -14.18993 -13.84276 -13.57107 -13.49761 -12.86726 -12.66892 -12.36780 -12.17051 -11.88433 -11.79829 -11.57145 -11.38572 -11.17805 -11.08378 -10.87347 -10.74478 -10.58328 -10.52324 -10.40526 -10.24528 -9.84994 -9.40237 -8.87131 -7.63495 -7.54492 -6.21686 -4.65960 1.99107 2.85935 3.12413 3.19937 3.23268 3.60843 4.08051 4.14178 4.33464 4.46890 4.54884 4.70773 4.90194 5.12398 5.15532 5.27051 5.33551 5.49391 5.54544 5.57897 5.62418 5.71352 5.80079 5.85753 5.89167 5.95053 6.04748 6.16573 6.29027 6.33119 6.57549 6.74467 7.30754 7.41705 7.70013 7.90679 8.07876 8.31512 9.00712 9.51007 10.57284 10.75772 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.003699 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.908508 B = 7568.806445 C = 7956.823821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.158 3.842 13 H 0.076 0.924 14 C -0.165 4.165 15 C 0.064 3.936 16 O -0.359 6.359 17 C 0.103 3.897 18 C -0.144 4.144 19 C -0.105 4.105 20 C 0.489 3.511 21 O -0.516 6.516 22 O -0.515 6.515 23 C -0.102 4.102 24 C -0.138 4.138 25 H 0.268 0.732 26 H 0.380 0.620 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.407 0.593 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -16.652 -3.832 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.051 3.949 13 H 0.094 0.906 14 C -0.204 4.204 15 C -0.013 4.013 16 O -0.278 6.278 17 C 0.062 3.938 18 C -0.182 4.182 19 C -0.124 4.124 20 C 0.332 3.668 21 O -0.404 6.404 22 O -0.327 6.327 23 C -0.139 4.139 24 C -0.177 4.177 25 H 0.079 0.921 26 H 0.212 0.788 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.146 0.854 34 H 0.266 0.734 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.936 -16.580 -3.504 16.972 hybrid contribution 0.801 0.895 -0.712 1.396 sum 1.737 -15.686 -4.216 16.335 Atomic orbital electron populations 1.70018 1.07067 1.27252 1.35299 1.25691 0.94583 1.00271 0.92577 0.86379 0.80265 0.81546 0.78682 1.19815 1.20459 1.18894 1.20901 0.94122 0.89653 1.53731 0.91436 1.18221 0.87165 0.82383 0.76267 1.90588 1.14044 1.86449 1.55297 1.46195 1.08479 1.05380 1.81521 1.20452 0.95757 0.84518 0.94153 0.90574 1.22614 1.01496 0.96603 0.99693 1.22634 0.92463 0.89390 0.96832 1.87850 1.67984 1.44198 1.27785 1.21984 0.94315 0.94037 0.83449 1.23534 1.01073 0.93273 1.00308 1.22505 1.01421 0.99995 0.88492 1.23463 0.80347 0.72188 0.90818 1.90711 1.33825 1.49807 1.66082 1.84574 1.38484 1.78415 1.31220 1.23025 0.94574 0.97877 0.98412 1.22298 0.99584 0.93611 1.02167 0.92135 0.78848 0.90025 0.91599 0.88827 0.92869 0.89339 0.88473 0.85378 0.73409 0.87226 0.89381 0.90672 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.78 11.85 55.55 0.66 -22.12 16 2 C 0.09 2.45 5.49 -17.37 -0.10 2.35 16 3 Si 0.91 20.00 29.56 -169.99 -5.03 14.97 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.55 -15.27 9.53 -35.63 -0.34 -15.61 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 9 C 0.56 15.42 7.71 -12.98 -0.10 15.32 16 10 O -0.58 -18.27 14.72 5.20 0.08 -18.19 16 11 N -0.76 -16.49 5.08 -54.98 -0.28 -16.77 16 12 C 0.16 2.88 2.46 -67.69 -0.17 2.72 16 13 H 0.08 1.58 7.56 -51.93 -0.39 1.19 16 14 C -0.16 -2.78 5.66 -26.63 -0.15 -2.93 16 15 C 0.06 0.86 6.73 37.18 0.25 1.11 16 16 O -0.36 -4.80 10.45 -35.23 -0.37 -5.17 16 17 C 0.10 1.29 1.03 -90.29 -0.09 1.19 16 18 C -0.14 -1.68 6.66 -26.07 -0.17 -1.85 16 19 C -0.11 -1.08 4.20 -90.89 -0.38 -1.47 16 20 C 0.49 5.36 7.85 36.00 0.28 5.65 16 21 O -0.52 -7.06 16.65 -18.75 -0.31 -7.37 16 22 O -0.52 -4.49 13.42 -39.26 -0.53 -5.02 16 23 C -0.10 -1.10 6.79 -26.08 -0.18 -1.28 16 24 C -0.14 -1.96 4.74 -26.66 -0.13 -2.09 16 25 H 0.27 7.21 8.29 -40.82 -0.34 6.88 16 26 H 0.38 7.31 8.58 -40.82 -0.35 6.96 16 27 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.71 7.21 -51.93 -0.37 0.34 16 31 H 0.09 1.01 7.26 -51.93 -0.38 0.64 16 32 H 0.10 1.16 7.97 -51.93 -0.41 0.75 16 33 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.41 1.82 9.10 45.56 0.41 2.23 16 35 H 0.11 1.22 7.38 -51.93 -0.38 0.84 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -35.39 320.03 -6.60 -42.00 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.38 Total: 9.74 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.27 Total: 3.12 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.38 Total: -38.89 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.13 Total: -35.75 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.39 -6.60 -42.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060362.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.221 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds