Wall clock time and date at job start Tue Mar 31 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00148 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00004 * 3 2 1 5 5 H 1.48499 * 109.47039 * 30.00164 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99964 * 3 2 1 7 7 C 1.40047 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99800 * 359.72267 * 7 2 1 10 10 O 1.21683 * 120.00055 * 0.27707 * 9 7 2 11 11 N 1.34774 * 119.99501 * 180.27774 * 9 7 2 12 12 C 1.46507 * 119.99686 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.54872 * 325.00009 * 12 11 9 14 14 C 1.53163 * 109.55401 * 85.20117 * 12 11 9 15 15 C 1.53050 * 109.39775 * 178.38109 * 14 12 11 16 16 O 1.43044 * 109.52584 * 300.82074 * 15 14 12 17 17 C 1.42579 * 113.85231 * 58.67899 * 16 15 14 18 18 C 1.53418 * 113.57097 * 73.88747 * 17 16 15 19 19 C 1.53838 * 86.97873 * 89.48101 * 18 17 16 20 20 C 1.50697 * 113.68232 * 139.73541 * 19 18 17 21 21 O 1.20830 * 120.00163 * 262.40671 * 20 19 18 22 22 O 1.34230 * 120.00110 * 82.40706 * 20 19 18 23 23 C 1.53397 * 113.61610 * 171.80438 * 17 16 15 24 24 C 1.52812 * 112.94015 * 302.90618 * 17 16 15 25 25 H 0.96995 * 119.99831 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00718 * 359.97438 * 11 9 7 27 27 H 1.08996 * 109.48126 * 298.46173 * 14 12 11 28 28 H 1.08994 * 109.47860 * 58.50124 * 14 12 11 29 29 H 1.09000 * 109.47316 * 180.78296 * 15 14 12 30 30 H 1.08993 * 109.39473 * 60.81386 * 15 14 12 31 31 H 1.09002 * 113.63428 * 204.00521 * 18 17 16 32 32 H 1.09000 * 113.63335 * 334.95635 * 18 17 16 33 33 H 1.09000 * 113.60462 * 270.60133 * 19 18 17 34 34 H 0.96703 * 117.00644 * 179.97438 * 22 20 19 35 35 H 1.08996 * 113.63425 * 25.08933 * 23 17 16 36 36 H 1.09006 * 113.62772 * 156.04097 * 23 17 16 37 37 H 1.09003 * 109.56335 * 294.09920 * 24 17 16 38 38 H 1.09005 * 109.56106 * 173.75969 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4383 2.6526 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2750 -2.4805 0.0050 10 8 0.0582 -2.4805 0.0050 11 7 1.9490 -3.6476 0.0102 12 6 1.2164 -4.9164 0.0152 13 1 0.3052 -4.8091 0.6035 14 6 0.8561 -5.3060 -1.4216 15 6 0.1267 -6.6515 -1.4157 16 8 0.9685 -7.6492 -0.8310 17 6 1.3706 -7.3538 0.5046 18 6 0.2509 -7.5375 1.5372 19 6 0.7230 -8.9957 1.6693 20 6 0.7169 -9.5078 3.0866 21 8 1.7375 -9.5084 3.7333 22 8 -0.4225 -9.9634 3.6306 23 6 2.1040 -8.5104 1.1956 24 6 2.0954 -6.0140 0.6259 25 1 -0.4850 0.8400 0.0004 26 1 2.9190 -3.6477 0.0098 27 1 0.2099 -4.5422 -1.8541 28 1 1.7668 -5.3904 -2.0145 29 1 -0.1181 -6.9366 -2.4389 30 1 -0.7906 -6.5633 -0.8336 31 1 0.3916 -6.9488 2.4438 32 1 -0.7504 -7.4387 1.1182 33 1 0.2367 -9.6769 0.9711 34 1 -0.3770 -10.2821 4.5425 35 1 2.5931 -9.1942 0.5020 36 1 2.7569 -8.1906 2.0078 37 1 3.0438 -6.0623 0.0907 38 1 2.2786 -5.7921 1.6773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:38 Heat of formation + Delta-G solvation = -161.170856 kcal Electronic energy + Delta-G solvation = -22670.556389 eV Core-core repulsion = 19092.348530 eV Total energy + Delta-G solvation = -3578.207859 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20910 -39.77453 -37.48921 -36.46975 -35.84381 -34.14940 -32.41360 -30.52022 -29.84668 -26.49810 -26.08749 -25.48749 -23.57142 -21.98116 -20.32287 -19.45746 -19.11981 -18.29436 -17.35626 -16.83696 -16.21989 -15.91527 -15.59038 -15.36316 -14.56723 -14.54067 -14.18970 -13.84356 -13.57204 -13.49667 -12.86472 -12.67017 -12.36604 -12.16077 -11.88322 -11.79756 -11.57117 -11.38437 -11.18334 -11.06971 -10.87118 -10.74250 -10.58106 -10.50734 -10.43029 -10.25127 -9.84568 -9.40042 -8.87276 -7.63673 -7.54239 -6.20644 -4.66329 1.99121 2.85983 3.12702 3.19793 3.23045 3.60909 4.08075 4.14191 4.33559 4.46683 4.55954 4.70452 4.90041 5.12312 5.15745 5.27048 5.33685 5.49576 5.54645 5.58012 5.62685 5.72247 5.79968 5.85994 5.89249 5.95150 6.04843 6.16645 6.29083 6.33223 6.57745 6.74610 7.30824 7.41478 7.70057 7.90672 8.08002 8.31192 9.00690 9.51233 10.57710 10.76222 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027456 B = 0.003668 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.566218 B = 7632.401788 C = 7986.575958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.158 3.842 13 H 0.076 0.924 14 C -0.165 4.165 15 C 0.063 3.937 16 O -0.359 6.359 17 C 0.103 3.897 18 C -0.144 4.144 19 C -0.105 4.105 20 C 0.489 3.511 21 O -0.516 6.516 22 O -0.515 6.515 23 C -0.102 4.102 24 C -0.138 4.138 25 H 0.268 0.732 26 H 0.380 0.620 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.407 0.593 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -16.936 2.129 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.416 5.416 12 C 0.051 3.949 13 H 0.094 0.906 14 C -0.204 4.204 15 C -0.013 4.013 16 O -0.278 6.278 17 C 0.062 3.938 18 C -0.182 4.182 19 C -0.124 4.124 20 C 0.332 3.668 21 O -0.404 6.404 22 O -0.327 6.327 23 C -0.139 4.139 24 C -0.177 4.177 25 H 0.079 0.921 26 H 0.211 0.789 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.146 0.854 34 H 0.266 0.734 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.840 -16.827 1.813 16.946 hybrid contribution 0.800 0.821 0.694 1.340 sum 1.640 -16.006 2.506 16.284 Atomic orbital electron populations 1.70016 1.07036 1.27244 1.35379 1.25697 0.94610 1.00265 0.92593 0.86386 0.80175 0.81444 0.78831 1.19750 1.20466 1.18925 1.20901 0.93597 0.89462 1.54361 0.91481 1.18215 0.87226 0.82444 0.76180 1.90589 1.14037 1.86803 1.54918 1.46194 1.08450 1.04580 1.82365 1.20455 0.95771 0.84350 0.94332 0.90564 1.22613 1.01475 0.96905 0.99394 1.22630 0.92590 0.87931 0.98172 1.87851 1.68552 1.45451 1.25953 1.21983 0.94327 0.94518 0.82961 1.23532 1.01061 0.92641 1.00942 1.22505 1.01404 0.98663 0.89854 1.23465 0.80313 0.73139 0.89900 1.90711 1.34226 1.52217 1.63272 1.84573 1.38229 1.74893 1.35001 1.23026 0.94546 0.96593 0.99719 1.22299 0.99595 0.93432 1.02325 0.92132 0.78864 0.90012 0.91616 0.88826 0.92883 0.88471 0.89339 0.85388 0.73409 0.89383 0.87219 0.90662 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.80 11.83 55.55 0.66 -22.14 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 20.00 29.56 -169.99 -5.02 14.97 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.55 -15.25 9.54 -35.63 -0.34 -15.59 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.42 7.72 -12.99 -0.10 15.32 16 10 O -0.58 -18.27 14.68 5.20 0.08 -18.19 16 11 N -0.76 -16.50 5.08 -54.97 -0.28 -16.78 16 12 C 0.16 2.88 2.46 -67.68 -0.17 2.71 16 13 H 0.08 1.59 7.55 -51.93 -0.39 1.20 16 14 C -0.16 -2.77 5.67 -26.62 -0.15 -2.93 16 15 C 0.06 0.86 6.73 37.18 0.25 1.11 16 16 O -0.36 -4.80 10.45 -35.23 -0.37 -5.17 16 17 C 0.10 1.29 1.03 -90.30 -0.09 1.19 16 18 C -0.14 -1.68 6.67 -26.08 -0.17 -1.85 16 19 C -0.11 -1.09 4.19 -90.90 -0.38 -1.47 16 20 C 0.49 5.36 7.86 36.00 0.28 5.65 16 21 O -0.52 -7.06 16.66 -18.75 -0.31 -7.37 16 22 O -0.52 -4.49 13.42 -39.26 -0.53 -5.02 16 23 C -0.10 -1.10 6.79 -26.08 -0.18 -1.28 16 24 C -0.14 -1.96 4.74 -26.67 -0.13 -2.09 16 25 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 26 H 0.38 7.31 8.59 -40.82 -0.35 6.96 16 27 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.71 7.21 -51.93 -0.37 0.34 16 31 H 0.10 1.16 7.97 -51.93 -0.41 0.75 16 32 H 0.09 1.01 7.26 -51.93 -0.38 0.64 16 33 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.41 1.82 9.10 45.56 0.41 2.23 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.11 1.22 7.38 -51.93 -0.38 0.84 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -35.39 319.99 -6.60 -41.99 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.38 Total: 9.76 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.27 Total: 3.12 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.38 Total: -38.92 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.13 Total: -35.75 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.39 -6.60 -41.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.176 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds