Wall clock time and date at job start Tue Mar 31 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99874 * 2 1 4 4 H 1.48507 * 109.46802 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46880 * 299.99847 * 3 2 1 6 6 H 1.48493 * 109.47259 * 60.00132 * 3 2 1 7 7 C 1.38950 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00314 * 202.31353 * 7 2 1 9 9 N 1.37102 * 119.99624 * 22.31314 * 7 2 1 10 10 C 1.46495 * 120.00280 * 12.53417 * 9 7 2 11 11 C 1.50704 * 109.47004 * 263.69915 * 10 9 7 12 12 O 1.20817 * 120.00160 * 354.66477 * 11 10 9 13 13 O 1.34234 * 119.99854 * 174.66587 * 11 10 9 14 14 C 1.34782 * 119.99623 * 192.53827 * 9 7 2 15 15 O 1.21295 * 119.99741 * 185.11639 * 14 9 7 16 16 C 1.50693 * 120.00125 * 5.10962 * 14 9 7 17 17 H 1.09003 * 110.54301 * 27.25899 * 16 14 9 18 18 C 1.54808 * 110.49158 * 264.64173 * 16 14 9 19 19 C 1.54997 * 102.09585 * 262.20616 * 18 16 14 20 20 O 1.44378 * 103.48545 * 322.97483 * 19 18 16 21 21 C 1.43742 * 106.97847 * 40.06179 * 20 19 18 22 22 H 1.08993 * 110.00629 * 92.97936 * 21 20 19 23 23 C 1.53004 * 109.87727 * 214.06069 * 21 20 19 24 24 C 1.52994 * 117.50004 * 297.82878 * 23 21 20 25 25 C 1.53000 * 60.03392 * 107.50087 * 24 23 21 26 26 H 0.97004 * 119.99742 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47011 * 23.69352 * 10 9 7 28 28 H 1.08992 * 109.47097 * 143.69884 * 10 9 7 29 29 H 0.96694 * 117.00109 * 180.02562 * 13 11 10 30 30 H 1.09004 * 110.90610 * 20.40611 * 18 16 14 31 31 H 1.08998 * 110.90803 * 144.00466 * 18 16 14 32 32 H 1.09000 * 110.61521 * 81.47518 * 19 18 16 33 33 H 1.08998 * 110.61854 * 204.31406 * 19 18 16 34 34 H 1.09003 * 115.55931 * 152.14220 * 23 21 20 35 35 H 1.09004 * 117.50053 * 0.02562 * 24 23 21 36 36 H 1.09001 * 117.50196 * 215.00284 * 24 23 21 37 37 H 1.08993 * 117.49610 * 107.47876 * 25 24 23 38 38 H 1.08998 * 117.50036 * 252.47325 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0283 -1.2385 0.3546 9 7 1.4004 -2.3460 -0.4519 10 6 0.1334 -2.2616 -1.1825 11 6 -1.0118 -2.4912 -0.2302 12 8 -0.7911 -2.7985 0.9172 13 8 -2.2772 -2.3544 -0.6568 14 6 1.9678 -3.5470 -0.2232 15 8 1.4797 -4.5492 -0.7013 16 6 3.2088 -3.6446 0.6261 17 1 3.2489 -2.8224 1.3406 18 6 4.4755 -3.6512 -0.2639 19 6 4.7955 -5.1646 -0.3621 20 8 4.4617 -5.6652 0.9504 21 6 3.2554 -4.9991 1.3593 22 1 2.3873 -5.5987 1.0857 23 6 3.2741 -4.7714 2.8722 24 6 3.3204 -6.0078 3.7722 25 6 4.5601 -5.1234 3.6244 26 1 -0.4850 0.8401 0.0004 27 1 0.0389 -1.2735 -1.6329 28 1 0.1137 -3.0208 -1.9643 29 1 -2.9781 -2.5115 -0.0096 30 1 4.2616 -3.2342 -1.2480 31 1 5.2914 -3.1115 0.2167 32 1 4.1760 -5.6393 -1.1230 33 1 5.8526 -5.3202 -0.5776 34 1 2.7033 -3.9127 3.2257 35 1 3.3378 -6.9835 3.2865 36 1 2.7797 -5.9627 4.7176 37 1 4.8347 -4.4961 4.4724 38 1 5.3928 -5.5173 3.0419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:42 Heat of formation + Delta-G solvation = -133.918197 kcal Electronic energy + Delta-G solvation = -23765.613530 eV Core-core repulsion = 20188.587435 eV Total energy + Delta-G solvation = -3577.026095 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03628 -39.05844 -37.70209 -36.00954 -35.17897 -34.64401 -31.94018 -31.54020 -28.88494 -27.84031 -24.99132 -23.42782 -22.12714 -21.90039 -20.70160 -19.87120 -19.18035 -17.32061 -16.97399 -16.47759 -15.79821 -15.56270 -15.18944 -15.12779 -14.49499 -14.42369 -14.14155 -14.02876 -13.63815 -12.97579 -12.85532 -12.01515 -11.92490 -11.70373 -11.56754 -11.37691 -11.18618 -11.09703 -10.98363 -10.87286 -10.71532 -10.51285 -10.40844 -10.26711 -9.92183 -9.75988 -9.69856 -9.13751 -9.10696 -8.58343 -8.09427 -6.61785 -4.06944 2.99667 3.13101 3.16741 3.45570 3.62793 3.92387 4.08371 4.21277 4.28749 4.57440 4.87210 4.98132 5.22623 5.31380 5.33257 5.37377 5.53561 5.80664 5.85624 5.92656 5.97787 6.03674 6.10712 6.23940 6.28851 6.36360 6.44165 6.45591 6.52786 6.56007 6.64253 6.67962 7.24773 7.32407 7.45036 7.56183 8.13895 8.88068 9.09149 9.26907 9.66997 10.45333 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.006803 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.446498 B = 4115.086100 C = 4754.935386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.035 3.965 3 Si 0.924 3.076 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.334 4.334 8 H 0.107 0.893 9 N -0.427 5.427 10 C 0.151 3.849 11 C 0.500 3.500 12 O -0.518 6.518 13 O -0.531 6.531 14 C 0.478 3.522 15 O -0.600 6.600 16 C -0.118 4.118 17 H 0.107 0.893 18 C -0.135 4.135 19 C 0.051 3.949 20 O -0.376 6.376 21 C 0.122 3.878 22 H 0.087 0.913 23 C -0.153 4.153 24 C -0.178 4.178 25 C -0.168 4.168 26 H 0.274 0.726 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.391 0.609 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 -3.031 0.398 5.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.169 4.169 3 Si 0.751 3.249 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.461 4.461 8 H 0.125 0.875 9 N -0.145 5.145 10 C 0.025 3.975 11 C 0.342 3.658 12 O -0.404 6.404 13 O -0.342 6.342 14 C 0.268 3.732 15 O -0.486 6.486 16 C -0.139 4.139 17 H 0.125 0.875 18 C -0.173 4.173 19 C -0.026 4.026 20 O -0.296 6.296 21 C 0.065 3.935 22 H 0.105 0.895 23 C -0.171 4.171 24 C -0.215 4.215 25 C -0.205 4.205 26 H 0.084 0.916 27 H 0.148 0.852 28 H 0.101 0.899 29 H 0.247 0.753 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.091 -3.523 0.313 6.198 hybrid contribution -0.451 1.276 0.562 1.465 sum 4.640 -2.247 0.874 5.229 Atomic orbital electron populations 1.69875 1.06208 1.28226 1.46558 1.25229 0.95274 1.00080 0.96326 0.85905 0.79836 0.81158 0.78044 1.19069 1.20337 1.20767 1.19743 0.98073 0.84417 1.43819 0.87507 1.43418 1.17599 1.05622 1.47895 1.20568 0.80671 1.04637 0.91637 1.23774 0.82620 0.70592 0.88836 1.90563 1.84763 1.44623 1.20466 1.84524 1.17605 1.84408 1.47620 1.19829 0.86890 0.82764 0.83747 1.90530 1.67106 1.35859 1.55065 1.22387 0.94122 0.99227 0.98214 0.87486 1.22976 0.96577 0.97060 1.00732 1.23495 1.00202 0.92952 0.85947 1.88735 1.43111 1.64996 1.32712 1.22115 0.88317 0.91850 0.91255 0.89543 1.22568 1.02384 0.99873 0.92322 1.22892 1.02090 0.95549 1.00952 1.22840 0.92466 1.03250 1.01917 0.91559 0.85187 0.89924 0.75329 0.90004 0.90358 0.91923 0.89586 0.86744 0.88889 0.89271 0.89522 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.67 9.43 55.50 0.52 -21.15 16 2 C 0.04 0.85 4.91 -17.47 -0.09 0.76 16 3 Si 0.92 18.54 29.61 -169.99 -5.03 13.51 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.33 -8.02 8.97 -14.93 -0.13 -8.15 16 8 H 0.11 2.42 6.27 -52.49 -0.33 2.09 16 9 N -0.43 -10.39 2.22 -116.10 -0.26 -10.65 16 10 C 0.15 3.53 5.18 -5.19 -0.03 3.51 16 11 C 0.50 12.01 6.65 36.01 0.24 12.25 16 12 O -0.52 -14.07 16.96 -18.74 -0.32 -14.39 16 13 O -0.53 -10.53 13.42 -39.27 -0.53 -11.06 16 14 C 0.48 11.32 6.26 -10.99 -0.07 11.25 16 15 O -0.60 -15.41 15.40 5.54 0.09 -15.33 16 16 C -0.12 -2.35 2.18 -90.25 -0.20 -2.55 16 17 H 0.11 2.18 5.98 -51.93 -0.31 1.87 16 18 C -0.14 -2.24 6.70 -24.72 -0.17 -2.41 16 19 C 0.05 0.80 7.72 38.21 0.29 1.09 16 20 O -0.38 -6.66 9.58 -35.23 -0.34 -7.00 16 21 C 0.12 2.34 3.33 -26.15 -0.09 2.25 16 22 H 0.09 1.90 6.85 -51.93 -0.36 1.54 16 23 C -0.15 -2.62 5.56 -90.58 -0.50 -3.12 16 24 C -0.18 -2.63 10.22 -26.73 -0.27 -2.91 16 25 C -0.17 -2.43 9.88 -26.69 -0.26 -2.70 16 26 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 27 H 0.13 3.05 6.06 -51.93 -0.31 2.73 16 28 H 0.08 1.83 7.55 -51.93 -0.39 1.44 16 29 H 0.39 5.99 9.10 45.56 0.41 6.40 16 30 H 0.08 1.37 7.86 -51.93 -0.41 0.97 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.11 2.04 7.96 -51.93 -0.41 1.62 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 1.52 7.06 -51.93 -0.37 1.15 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -30.42 317.34 -6.50 -36.92 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -4.15 Total: 15.07 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -1.27 Total: 9.28 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.27 Total: -31.79 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.10 Total: -47.77 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.42 -6.50 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.994 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds