Wall clock time and date at job start Tue Mar 31 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00113 * 2 1 4 4 H 1.48507 * 109.46982 * 240.00161 * 3 2 1 5 5 H 1.48500 * 109.47304 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47231 * 120.00493 * 3 2 1 7 7 C 1.38954 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00358 * 203.83495 * 7 2 1 9 9 N 1.37103 * 119.99798 * 23.83221 * 7 2 1 10 10 C 1.46500 * 120.00167 * 228.97099 * 9 7 2 11 11 C 1.53006 * 109.46662 * 267.95318 * 10 9 7 12 12 C 1.50702 * 109.46813 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00213 * 359.97438 * 12 11 10 14 14 O 1.34231 * 119.99679 * 180.02562 * 12 11 10 15 15 C 1.34781 * 119.99950 * 48.96763 * 9 7 2 16 16 O 1.21287 * 119.99724 * 4.43241 * 15 9 7 17 17 C 1.50692 * 119.99952 * 184.42812 * 15 9 7 18 18 C 1.53007 * 109.33794 * 78.54548 * 17 15 9 19 19 C 1.53234 * 109.37904 * 183.47413 * 18 17 15 20 20 C 1.51268 * 108.69680 * 305.65920 * 19 18 17 21 21 O 1.20756 * 120.85016 * 231.23458 * 20 19 18 22 22 C 1.51262 * 118.29895 * 51.25365 * 20 19 18 23 23 C 1.52957 * 109.41338 * 199.05502 * 17 15 9 24 24 H 0.96999 * 119.99451 * 4.88007 * 1 2 3 25 25 H 1.08994 * 109.46967 * 27.94978 * 10 9 7 26 26 H 1.08992 * 109.47220 * 147.95541 * 10 9 7 27 27 H 1.09001 * 109.47132 * 299.99941 * 11 10 9 28 28 H 1.09004 * 109.46883 * 59.99760 * 11 10 9 29 29 H 0.96704 * 116.99808 * 179.97438 * 14 12 11 30 30 H 1.09000 * 109.41512 * 318.91450 * 17 15 9 31 31 H 1.08996 * 109.34065 * 63.59924 * 18 17 15 32 32 H 1.09003 * 109.65583 * 303.54063 * 18 17 15 33 33 H 1.09005 * 109.62415 * 185.84931 * 19 18 17 34 34 H 1.08997 * 109.62830 * 65.47443 * 19 18 17 35 35 H 1.08994 * 109.63058 * 68.36342 * 22 20 19 36 36 H 1.09004 * 109.62695 * 188.74590 * 22 20 19 37 37 H 1.08992 * 109.48427 * 56.38885 * 23 17 15 38 38 H 1.09008 * 109.49477 * 296.35096 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0198 -1.2435 0.3774 9 7 1.4110 -2.3399 -0.4808 10 6 1.4472 -3.5751 0.3060 11 6 2.6659 -4.4048 -0.1031 12 6 2.7035 -5.6752 0.7067 13 8 1.8440 -5.8943 1.5272 14 8 3.6924 -6.5629 0.5172 15 6 0.7900 -2.3207 -1.6768 16 8 0.8287 -1.3222 -2.3643 17 6 0.0476 -3.5398 -2.1600 18 6 -1.3115 -3.6154 -1.4611 19 6 -2.0309 -4.9000 -1.8860 20 6 -2.0994 -4.9404 -3.3966 21 8 -3.1473 -5.1362 -3.9639 22 6 -0.8217 -4.7298 -4.1783 23 6 -0.1477 -3.4492 -3.6743 24 1 -0.4849 0.8370 -0.0715 25 1 1.5143 -3.3290 1.3657 26 1 0.5389 -4.1491 0.1231 27 1 2.5988 -4.6508 -1.1628 28 1 3.5743 -3.8307 0.0798 29 1 3.6743 -7.3627 1.0604 30 1 0.6246 -4.4334 -1.9219 31 1 -1.9121 -2.7514 -1.7453 32 1 -1.1684 -3.6193 -0.3805 33 1 -3.0398 -4.9081 -1.4734 34 1 -1.4792 -5.7663 -1.5212 35 1 -0.1550 -5.5785 -4.0259 36 1 -1.0532 -4.6320 -5.2389 37 1 0.8214 -3.3333 -4.1595 38 1 -0.7769 -2.5906 -3.9093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:11 Heat of formation + Delta-G solvation = -175.130131 kcal Electronic energy + Delta-G solvation = -23347.410007 eV Core-core repulsion = 19768.596828 eV Total energy + Delta-G solvation = -3578.813179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.22056 -39.83179 -38.54302 -36.12466 -35.66923 -34.64714 -32.35127 -31.07477 -30.14677 -28.91277 -25.21031 -24.08664 -22.95770 -21.96837 -20.72584 -19.44518 -18.67010 -17.99676 -16.92046 -16.52148 -15.97955 -15.65159 -15.25824 -15.21762 -14.92460 -14.56021 -14.24976 -13.86838 -13.31554 -13.18408 -13.02705 -12.79030 -12.54317 -12.15297 -12.01304 -11.55273 -11.46601 -11.44693 -11.17757 -10.96969 -10.94514 -10.78528 -10.63816 -10.47796 -10.41402 -10.31387 -10.21704 -9.20977 -8.71128 -8.22962 -7.31792 -6.24402 -4.01420 2.06713 2.34125 3.14137 3.28124 3.36511 3.42130 3.96830 4.23757 4.30909 4.73030 4.92039 4.99643 5.12064 5.20143 5.25622 5.34025 5.37479 5.41705 5.53192 5.62008 5.69388 5.77059 5.83068 5.92012 6.04221 6.18486 6.20807 6.32445 6.35044 6.50665 6.59781 6.61913 6.70587 7.55759 7.59521 7.99057 8.18861 8.95864 9.02928 9.51139 10.11904 10.83589 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011046 B = 0.007728 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.239672 B = 3622.175665 C = 5489.207580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.082 3.918 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.355 4.355 8 H 0.077 0.923 9 N -0.451 5.451 10 C 0.114 3.886 11 C -0.132 4.132 12 C 0.482 3.518 13 O -0.517 6.517 14 O -0.522 6.522 15 C 0.496 3.504 16 O -0.543 6.543 17 C -0.111 4.111 18 C -0.100 4.100 19 C -0.169 4.169 20 C 0.365 3.635 21 O -0.469 6.469 22 C -0.169 4.169 23 C -0.091 4.091 24 H 0.266 0.734 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.404 0.596 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 -12.076 -1.544 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.129 4.129 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.481 4.481 8 H 0.095 0.905 9 N -0.173 5.173 10 C -0.011 4.011 11 C -0.171 4.171 12 C 0.324 3.676 13 O -0.405 6.405 14 O -0.334 6.334 15 C 0.283 3.717 16 O -0.421 6.421 17 C -0.133 4.133 18 C -0.137 4.137 19 C -0.206 4.206 20 C 0.242 3.758 21 O -0.343 6.343 22 C -0.207 4.207 23 C -0.129 4.129 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.262 0.738 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.129 -11.208 -2.136 11.606 hybrid contribution 0.473 0.179 0.526 0.729 sum 2.602 -11.029 -1.610 11.445 Atomic orbital electron populations 1.69909 1.06665 1.28271 1.42315 1.25238 0.94644 0.99684 0.93290 0.86387 0.79657 0.82099 0.78569 1.19807 1.21275 1.20279 1.18843 0.97153 0.85861 1.46266 0.90549 1.43205 1.51784 1.07946 1.14349 1.21410 0.94162 0.87645 0.97914 1.22034 1.04687 0.90352 1.00067 1.23781 0.77639 0.84825 0.81352 1.90712 1.38436 1.76865 1.34442 1.84591 1.50870 1.33509 1.64421 1.19893 0.82058 0.88175 0.81569 1.90519 1.61593 1.34529 1.55504 1.21401 0.97026 0.99062 0.95846 1.21448 0.94695 0.96077 1.01520 1.22350 1.03418 1.00688 0.94183 1.24984 0.89398 0.69123 0.92320 1.90372 1.33500 1.36358 1.74104 1.22359 0.96790 1.00669 1.00889 1.21286 1.01593 0.95768 0.94260 0.92366 0.90118 0.91460 0.88124 0.87186 0.73804 0.90302 0.90700 0.89713 0.89422 0.88551 0.88646 0.89517 0.90449 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.55 12.74 55.50 0.71 -22.85 16 2 C 0.08 2.21 4.26 -17.46 -0.07 2.13 16 3 Si 0.91 21.24 29.62 -169.99 -5.03 16.20 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.36 -9.12 8.99 -14.93 -0.13 -9.26 16 8 H 0.08 1.89 7.94 -52.49 -0.42 1.47 16 9 N -0.45 -10.18 2.45 -114.82 -0.28 -10.46 16 10 C 0.11 2.05 4.23 -4.04 -0.02 2.03 16 11 C -0.13 -1.89 5.99 -27.88 -0.17 -2.06 16 12 C 0.48 6.40 8.33 36.01 0.30 6.70 16 13 O -0.52 -8.27 16.74 -18.75 -0.31 -8.59 16 14 O -0.52 -5.38 13.42 -39.26 -0.53 -5.90 16 15 C 0.50 11.18 6.12 -10.99 -0.07 11.11 16 16 O -0.54 -14.65 14.75 5.55 0.08 -14.56 16 17 C -0.11 -1.87 1.58 -91.79 -0.14 -2.01 16 18 C -0.10 -1.61 4.90 -26.61 -0.13 -1.74 16 19 C -0.17 -2.21 6.16 -27.48 -0.17 -2.38 16 20 C 0.37 5.23 6.73 -28.48 -0.19 5.04 16 21 O -0.47 -8.12 17.89 6.00 0.11 -8.02 16 22 C -0.17 -2.10 6.17 -27.48 -0.17 -2.27 16 23 C -0.09 -1.40 4.61 -26.63 -0.12 -1.52 16 24 H 0.27 7.27 8.32 -40.82 -0.34 6.93 16 25 H 0.08 1.57 7.98 -51.93 -0.41 1.15 16 26 H 0.07 1.13 4.89 -51.93 -0.25 0.88 16 27 H 0.10 1.29 7.26 -51.93 -0.38 0.91 16 28 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 29 H 0.40 2.36 9.10 45.56 0.41 2.78 16 30 H 0.08 1.11 6.13 -51.93 -0.32 0.79 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.44 6.56 -51.93 -0.34 1.10 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.34 8.02 -51.92 -0.42 0.92 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -33.86 320.18 -5.74 -39.60 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.22 Total: 3.97 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.09 Total: 5.79 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.43 Total: -33.31 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.65 Total: -37.07 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.86 -5.74 -39.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.533 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds