Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31349 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47315 * 85.65771 * 3 2 1 5 5 H 1.48502 * 109.47219 * 205.65728 * 3 2 1 6 6 H 1.48505 * 109.47046 * 325.65708 * 3 2 1 7 7 C 1.39071 * 120.00006 * 180.27362 * 2 1 3 8 8 H 1.08004 * 119.99832 * 34.51996 * 7 2 1 9 9 N 1.36818 * 120.00468 * 214.52054 * 7 2 1 10 10 C 1.46504 * 119.99712 * 34.74867 * 9 7 2 11 11 C 1.53005 * 109.46833 * 84.44278 * 10 9 7 12 12 C 1.50699 * 109.46935 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99956 * 0.02562 * 12 11 10 14 14 O 1.34232 * 120.00142 * 180.02562 * 12 11 10 15 15 C 1.34776 * 120.00286 * 214.75228 * 9 7 2 16 16 O 1.21662 * 119.99629 * 180.02562 * 15 9 7 17 17 C 1.46950 * 119.99969 * 359.97438 * 15 9 7 18 18 C 1.33127 * 119.99908 * 180.02562 * 17 15 9 19 19 C 1.50699 * 119.99792 * 180.02562 * 18 17 15 20 20 H 1.08991 * 110.33031 * 247.24809 * 19 18 17 21 21 C 1.54477 * 110.37179 * 124.99851 * 19 18 17 22 22 C 1.54505 * 104.06662 * 217.19136 * 21 19 18 23 23 C 1.54480 * 104.06037 * 359.97438 * 22 21 19 24 24 O 1.44423 * 104.80413 * 23.98172 * 23 22 21 25 25 H 0.97000 * 120.00223 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47212 * 204.44354 * 10 9 7 27 27 H 1.08995 * 109.47101 * 324.44617 * 10 9 7 28 28 H 1.08994 * 109.47283 * 300.00032 * 11 10 9 29 29 H 1.09003 * 109.46800 * 60.00583 * 11 10 9 30 30 H 0.96696 * 116.99919 * 180.02562 * 14 12 11 31 31 H 1.07997 * 119.99698 * 0.02562 * 17 15 9 32 32 H 1.08001 * 119.99933 * 359.97438 * 18 17 15 33 33 H 1.09006 * 110.51555 * 335.83569 * 21 19 18 34 34 H 1.09000 * 110.51031 * 98.40514 * 21 19 18 35 35 H 1.09000 * 110.51683 * 118.64197 * 22 21 19 36 36 H 1.09002 * 110.51024 * 241.35563 * 22 21 19 37 37 H 1.08998 * 110.37428 * 142.81413 * 23 22 21 38 38 H 1.09002 * 110.37167 * 265.15381 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4032 2.0994 1.3960 5 1 3.5880 1.4153 -0.6062 6 1 1.4939 2.6244 -0.7899 7 6 2.0088 -1.2044 -0.0058 8 1 1.6114 -2.0548 -0.5399 9 7 3.1963 -1.3120 0.6652 10 6 3.3977 -0.5822 1.9194 11 6 2.8223 -1.3954 3.0807 12 6 3.0300 -0.6450 4.3710 13 8 3.5813 0.4301 4.3625 14 8 2.6026 -1.1710 5.5296 15 6 4.1809 -2.0893 0.1723 16 8 5.2366 -2.1853 0.7692 17 6 3.9787 -2.8217 -1.0855 18 6 4.9510 -3.5900 -1.5722 19 6 4.7438 -4.3406 -2.8624 20 1 4.7169 -5.4141 -2.6758 21 6 5.8636 -3.9977 -3.8698 22 6 5.1418 -3.9608 -5.2353 23 6 3.6713 -4.2864 -4.8915 24 8 3.5245 -3.9099 -3.5050 25 1 -0.4850 -0.8400 0.0004 26 1 4.4640 -0.4234 2.0802 27 1 2.8912 0.3813 1.8645 28 1 1.7560 -1.5541 2.9199 29 1 3.3289 -2.3590 3.1356 30 1 2.7580 -0.6525 6.3309 31 1 3.0413 -2.7368 -1.6151 32 1 5.8885 -3.6745 -1.0427 33 1 6.2983 -3.0246 -3.6411 34 1 6.6330 -4.7697 -3.8629 35 1 5.2195 -2.9694 -5.6818 36 1 5.5532 -4.7158 -5.9053 37 1 2.9969 -3.7015 -5.5170 38 1 3.4791 -5.3518 -5.0178 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = -151.770912 kcal Electronic energy + Delta-G solvation = -22410.295471 eV Core-core repulsion = 18832.495224 eV Total energy + Delta-G solvation = -3577.800247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97223 -39.40321 -38.64095 -35.94176 -35.16934 -33.01064 -32.26772 -32.01354 -30.79386 -28.25225 -25.02295 -24.56780 -23.18308 -21.42893 -20.85940 -19.93252 -18.76059 -17.87373 -17.09040 -16.70085 -16.25255 -16.23302 -15.75903 -15.30564 -15.15336 -14.56113 -14.27714 -13.72455 -13.69678 -13.17640 -12.90531 -12.70635 -12.56290 -12.23106 -11.88522 -11.77672 -11.49014 -11.27982 -11.22085 -11.08312 -10.98975 -10.63159 -10.34512 -10.26605 -10.08644 -9.78150 -9.71958 -9.07510 -8.68500 -8.65968 -7.98754 -6.94506 -4.08281 2.13167 2.54461 3.22961 3.31472 3.34746 3.51700 3.97322 4.17909 4.22750 4.46165 4.66858 4.79847 4.91158 4.92825 5.23427 5.27377 5.41235 5.56147 5.57902 5.68241 5.70917 5.78391 5.84373 5.95320 5.96099 6.11411 6.13357 6.29878 6.43143 6.61109 6.77069 6.79666 7.19243 7.25448 7.53908 7.84382 8.18246 8.29252 8.94066 9.23952 9.71286 10.39827 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018277 B = 0.004867 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.632384 B = 5751.698749 C = 6594.119588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.040 3.960 3 Si 1.025 2.975 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.444 4.444 8 H 0.095 0.905 9 N -0.440 5.440 10 C 0.114 3.886 11 C -0.120 4.120 12 C 0.485 3.515 13 O -0.519 6.519 14 O -0.521 6.521 15 C 0.488 3.512 16 O -0.608 6.608 17 C -0.129 4.129 18 C -0.139 4.139 19 C 0.108 3.892 20 H 0.076 0.924 21 C -0.146 4.146 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.362 6.362 25 H 0.280 0.720 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.403 0.597 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.550 -7.059 -3.471 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.173 4.173 3 Si 0.852 3.148 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.113 0.887 9 N -0.158 5.158 10 C -0.010 4.010 11 C -0.159 4.159 12 C 0.327 3.673 13 O -0.407 6.407 14 O -0.332 6.332 15 C 0.281 3.719 16 O -0.496 6.496 17 C -0.150 4.150 18 C -0.159 4.159 19 C 0.050 3.950 20 H 0.094 0.906 21 C -0.184 4.184 22 C -0.193 4.193 23 C -0.034 4.034 24 O -0.281 6.281 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.261 0.739 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.674 -5.267 -3.443 8.473 hybrid contribution 0.199 -1.393 0.340 1.448 sum 5.873 -6.661 -3.102 9.406 Atomic orbital electron populations 1.70821 1.07131 1.31581 1.37730 1.26269 0.95727 1.01707 0.93631 0.84325 0.76597 0.76098 0.77786 1.20162 1.19882 1.20674 1.20323 0.98206 1.00297 1.38144 0.88695 1.43589 1.13500 1.41360 1.17346 1.21389 1.01534 0.94877 0.83182 1.21712 1.05872 1.00435 0.87863 1.23713 0.73749 0.84339 0.85474 1.90695 1.40149 1.22461 1.87374 1.84582 1.76616 1.53899 1.18105 1.18666 0.83024 0.84083 0.86142 1.90623 1.27022 1.69238 1.62751 1.22804 1.00508 0.95856 0.95787 1.23261 0.99843 0.97949 0.94891 1.21863 0.84051 0.97400 0.91641 0.90616 1.22933 0.98252 1.03263 0.93918 1.22940 0.95973 1.02679 0.97668 1.23376 0.96325 0.99660 0.84018 1.89237 1.37571 1.81240 1.20012 0.90852 0.89869 0.90446 0.86795 0.87841 0.73901 0.84488 0.85251 0.90182 0.90543 0.90642 0.90811 0.89145 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.69 13.69 55.50 0.76 -21.93 16 2 C 0.04 1.04 5.10 -17.45 -0.09 0.96 16 3 Si 1.03 24.28 26.25 -169.99 -4.46 19.82 16 4 H -0.27 -6.37 6.55 56.52 0.37 -6.00 16 5 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.44 -11.34 8.68 -15.02 -0.13 -11.47 16 8 H 0.10 2.52 6.78 -52.48 -0.36 2.16 16 9 N -0.44 -10.75 2.20 -116.21 -0.26 -11.00 16 10 C 0.11 2.61 3.89 -4.04 -0.02 2.59 16 11 C -0.12 -2.33 6.10 -27.88 -0.17 -2.50 16 12 C 0.48 8.71 8.33 36.01 0.30 9.01 16 13 O -0.52 -10.69 16.74 -18.75 -0.31 -11.00 16 14 O -0.52 -7.31 13.42 -39.26 -0.53 -7.83 16 15 C 0.49 11.82 7.58 -12.73 -0.10 11.72 16 16 O -0.61 -15.56 15.72 5.22 0.08 -15.48 16 17 C -0.13 -2.76 8.64 -37.83 -0.33 -3.09 16 18 C -0.14 -2.49 9.00 -36.09 -0.32 -2.81 16 19 C 0.11 1.57 3.83 -27.11 -0.10 1.47 16 20 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 21 C -0.15 -1.71 6.62 -25.17 -0.17 -1.88 16 22 C -0.15 -1.58 7.09 -25.16 -0.18 -1.76 16 23 C 0.04 0.51 7.63 37.93 0.29 0.80 16 24 O -0.36 -5.90 9.88 -35.23 -0.35 -6.24 16 25 H 0.28 7.38 8.73 -40.82 -0.36 7.02 16 26 H 0.08 1.94 7.22 -51.93 -0.37 1.57 16 27 H 0.08 1.84 3.66 -51.93 -0.19 1.65 16 28 H 0.11 2.22 8.14 -51.93 -0.42 1.80 16 29 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 30 H 0.40 3.66 9.10 45.56 0.41 4.07 16 31 H 0.14 3.06 5.40 -52.49 -0.28 2.78 16 32 H 0.13 2.30 7.49 -52.49 -0.39 1.90 16 33 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -31.51 322.53 -5.37 -36.88 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.16 Total: 8.91 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.01 Total: 3.02 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.50 Total: -32.93 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.11 Total: -40.56 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.46 Total: 19.82 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.51 -5.37 -36.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.888 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds