Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31351 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48501 * 109.47135 * 275.69623 * 3 2 1 5 5 H 1.48499 * 109.46874 * 35.69110 * 3 2 1 6 6 H 1.48491 * 109.47337 * 155.69257 * 3 2 1 7 7 C 1.39072 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99930 * 338.11596 * 7 2 1 9 9 N 1.36822 * 120.00042 * 158.11431 * 7 2 1 10 10 C 1.46492 * 120.00083 * 321.86525 * 9 7 2 11 11 C 1.52994 * 109.47308 * 263.65020 * 10 9 7 12 12 C 1.50702 * 109.47659 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99341 * 0.02562 * 12 11 10 14 14 O 1.34225 * 120.00209 * 179.97438 * 12 11 10 15 15 C 1.34777 * 119.99582 * 141.86317 * 9 7 2 16 16 O 1.21663 * 119.99712 * 179.97438 * 15 9 7 17 17 C 1.46946 * 120.00348 * 0.02562 * 15 9 7 18 18 C 1.33126 * 120.00195 * 179.97438 * 17 15 9 19 19 C 1.50702 * 120.00141 * 179.97438 * 18 17 15 20 20 H 1.08998 * 110.27061 * 357.91773 * 19 18 17 21 21 C 1.54944 * 110.30533 * 120.00111 * 19 18 17 22 22 C 1.55309 * 100.98150 * 155.33981 * 21 19 18 23 23 C 1.54434 * 102.22550 * 325.92293 * 22 21 19 24 24 O 1.43235 * 107.60894 * 21.29146 * 23 22 21 25 25 H 0.96997 * 120.00122 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47588 * 23.64938 * 10 9 7 27 27 H 1.08999 * 109.47324 * 143.64967 * 10 9 7 28 28 H 1.09006 * 109.47415 * 300.00328 * 11 10 9 29 29 H 1.09008 * 109.47260 * 59.99813 * 11 10 9 30 30 H 0.96704 * 116.99557 * 180.02562 * 14 12 11 31 31 H 1.07999 * 120.00145 * 359.97438 * 17 15 9 32 32 H 1.08003 * 119.99840 * 359.97438 * 18 17 15 33 33 H 1.09003 * 111.12793 * 273.28101 * 21 19 18 34 34 H 1.08999 * 111.12714 * 37.39842 * 21 19 18 35 35 H 1.09002 * 110.84436 * 84.08220 * 22 21 19 36 36 H 1.09002 * 110.84941 * 207.69639 * 22 21 19 37 37 H 1.09001 * 109.79027 * 261.79155 * 23 22 21 38 38 H 1.08998 * 109.92752 * 140.87460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.3746 2.1159 -1.3932 5 1 1.5102 2.6149 0.8168 6 1 3.5999 1.4085 0.5763 7 6 2.0089 -1.2044 -0.0005 8 1 1.5273 -2.1061 0.3477 9 7 3.3032 -1.2468 -0.4422 10 6 3.7120 -0.4353 -1.5913 11 6 3.6665 -1.2885 -2.8603 12 6 4.0877 -0.4539 -4.0423 13 8 4.3934 0.7045 -3.8856 14 8 4.1243 -0.9977 -5.2690 15 6 4.2019 -2.0353 0.1799 16 8 5.3527 -2.0734 -0.2131 17 6 3.7917 -2.8498 1.3321 18 6 4.6794 -3.6289 1.9463 19 6 4.2588 -4.4638 3.1284 20 1 3.2108 -4.2812 3.3659 21 6 4.4895 -5.9674 2.8340 22 6 4.6326 -6.5321 4.2737 23 6 5.3299 -5.3695 5.0133 24 8 5.0878 -4.1725 4.2647 25 1 -0.4850 0.8400 0.0004 26 1 3.0336 0.4112 -1.6981 27 1 4.7270 -0.0699 -1.4353 28 1 4.3450 -2.1351 -2.7536 29 1 2.6515 -1.6540 -3.0164 30 1 4.4011 -0.4230 -5.9958 31 1 2.7701 -2.8163 1.6808 32 1 5.7009 -3.6628 1.5974 33 1 3.6307 -6.4042 2.3242 34 1 5.4033 -6.1196 2.2597 35 1 3.6545 -6.7373 4.7089 36 1 5.2562 -7.4262 4.2796 37 1 6.4018 -5.5589 5.0711 38 1 4.9179 -5.2675 6.0172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = -149.218851 kcal Electronic energy + Delta-G solvation = -22179.293919 eV Core-core repulsion = 18601.604337 eV Total energy + Delta-G solvation = -3577.689581 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03290 -39.41065 -38.79315 -35.99384 -35.24030 -33.28375 -32.32601 -32.00995 -30.91416 -28.39874 -25.15155 -25.02204 -22.83936 -21.65614 -20.99337 -20.03871 -18.87710 -17.93072 -17.31434 -16.58299 -16.35228 -16.14200 -15.84217 -15.51344 -14.91973 -14.69816 -14.18138 -13.85526 -13.42874 -13.28276 -13.05107 -12.84341 -12.63614 -12.24262 -11.99045 -11.76404 -11.68341 -11.36330 -11.32148 -11.22225 -11.15713 -10.88957 -10.72831 -10.32117 -10.19367 -9.96937 -9.52820 -9.35406 -8.84682 -8.74591 -7.95480 -6.60263 -4.19809 1.95468 2.49685 3.09540 3.22793 3.26138 3.32072 3.88555 4.07171 4.28627 4.34749 4.48011 4.78023 4.83459 4.91717 5.18023 5.22909 5.34433 5.49178 5.52121 5.60945 5.65794 5.72503 5.78140 5.84633 5.96254 6.03907 6.10578 6.19595 6.30796 6.49932 6.71698 6.93370 7.04222 7.13070 7.21996 7.93114 8.10308 8.14774 8.83229 9.21293 9.54470 10.48975 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.004575 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.493134 B = 6119.141010 C = 7121.601667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.072 3.928 3 Si 0.866 3.134 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.353 4.353 8 H 0.109 0.891 9 N -0.451 5.451 10 C 0.114 3.886 11 C -0.123 4.123 12 C 0.485 3.515 13 O -0.520 6.520 14 O -0.520 6.520 15 C 0.503 3.497 16 O -0.598 6.598 17 C -0.139 4.139 18 C -0.121 4.121 19 C 0.112 3.888 20 H 0.079 0.921 21 C -0.147 4.147 22 C -0.156 4.156 23 C 0.049 3.951 24 O -0.375 6.375 25 H 0.278 0.722 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.404 0.596 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.877 -9.506 1.367 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.137 4.137 3 Si 0.692 3.308 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.479 4.479 8 H 0.127 0.873 9 N -0.170 5.170 10 C -0.010 4.010 11 C -0.162 4.162 12 C 0.327 3.673 13 O -0.408 6.408 14 O -0.331 6.331 15 C 0.295 3.705 16 O -0.484 6.484 17 C -0.160 4.160 18 C -0.141 4.141 19 C 0.055 3.945 20 H 0.097 0.903 21 C -0.185 4.185 22 C -0.194 4.194 23 C -0.028 4.028 24 O -0.294 6.294 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.261 0.739 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.245 -9.123 1.591 10.643 hybrid contribution 0.194 1.140 -0.527 1.271 sum 5.438 -7.983 1.064 9.718 Atomic orbital electron populations 1.69721 1.06333 1.28572 1.43799 1.25368 0.95081 0.98618 0.94627 0.87073 0.81437 0.83458 0.78808 1.19401 1.21065 1.18225 1.19069 0.85776 0.96840 1.46240 0.87308 1.43590 1.09831 1.39550 1.24041 1.21424 1.01668 0.93464 0.84401 1.21755 1.05078 0.99738 0.89613 1.23700 0.73042 0.86742 0.83785 1.90704 1.45468 1.18921 1.85694 1.84579 1.81396 1.48626 1.18530 1.18510 0.84344 0.83695 0.83966 1.90654 1.19082 1.70284 1.68393 1.22843 1.00859 0.95545 0.96740 1.23299 1.00331 0.95969 0.94519 1.22002 0.94601 0.93127 0.84774 0.90313 1.23280 1.03582 0.94768 0.96866 1.23145 1.01660 0.98830 0.95745 1.23109 0.99888 0.84491 0.95270 1.88504 1.71070 1.30759 1.39089 0.91201 0.90162 0.90460 0.87307 0.86772 0.73854 0.84900 0.85874 0.89579 0.90019 0.90501 0.90132 0.91572 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.60 13.95 55.50 0.77 -21.83 16 2 C 0.07 1.85 5.27 -17.45 -0.09 1.76 16 3 Si 0.87 20.63 25.04 -169.99 -4.26 16.38 16 4 H -0.27 -6.35 6.70 56.52 0.38 -5.97 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.35 -8.77 8.87 -15.02 -0.13 -8.90 16 8 H 0.11 2.75 6.95 -52.49 -0.36 2.39 16 9 N -0.45 -10.63 2.17 -116.22 -0.25 -10.88 16 10 C 0.11 2.55 3.21 -4.05 -0.01 2.54 16 11 C -0.12 -2.29 6.08 -27.88 -0.17 -2.46 16 12 C 0.48 8.46 8.33 36.01 0.30 8.76 16 13 O -0.52 -10.58 16.74 -18.75 -0.31 -10.89 16 14 O -0.52 -7.00 13.42 -39.24 -0.53 -7.53 16 15 C 0.50 11.61 7.53 -12.73 -0.10 11.52 16 16 O -0.60 -14.78 15.91 5.22 0.08 -14.69 16 17 C -0.14 -2.76 8.90 -37.84 -0.34 -3.10 16 18 C -0.12 -2.11 8.78 -36.09 -0.32 -2.43 16 19 C 0.11 1.62 3.81 -26.86 -0.10 1.52 16 20 H 0.08 1.11 7.86 -51.93 -0.41 0.70 16 21 C -0.15 -1.64 6.56 -24.48 -0.16 -1.81 16 22 C -0.16 -1.43 7.02 -24.75 -0.17 -1.61 16 23 C 0.05 0.54 7.80 37.91 0.30 0.84 16 24 O -0.37 -5.77 11.02 -35.23 -0.39 -6.16 16 25 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.08 1.89 3.62 -51.93 -0.19 1.70 16 27 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 28 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 29 H 0.11 2.04 8.14 -51.92 -0.42 1.62 16 30 H 0.40 3.47 9.10 45.56 0.41 3.89 16 31 H 0.13 2.56 6.37 -52.49 -0.33 2.23 16 32 H 0.12 2.27 7.49 -52.48 -0.39 1.88 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -31.39 323.65 -5.20 -36.59 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.20 Total: 7.51 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.00 Total: 6.62 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.52 Total: -32.70 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.15 Total: -39.27 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.26 Total: 16.38 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.39 -5.20 -36.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.630 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds