Wall clock time and date at job start Tue Mar 31 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86804 * 119.99772 * 2 1 4 4 H 1.48501 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47157 * 299.99587 * 3 2 1 6 6 H 1.48493 * 109.46981 * 60.00086 * 3 2 1 7 7 C 1.39079 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99870 * 154.72641 * 7 2 1 9 9 N 1.36815 * 119.99902 * 334.73001 * 7 2 1 10 10 C 1.46504 * 119.99910 * 326.85691 * 9 7 2 11 11 C 1.52996 * 109.47273 * 268.55077 * 10 9 7 12 12 C 1.50700 * 109.46951 * 180.02562 * 11 10 9 13 13 O 1.20825 * 119.99796 * 359.97438 * 12 11 10 14 14 O 1.34225 * 119.99841 * 179.97438 * 12 11 10 15 15 C 1.34772 * 120.00079 * 146.86690 * 9 7 2 16 16 O 1.21661 * 120.00310 * 180.02562 * 15 9 7 17 17 C 1.46958 * 120.00051 * 359.97438 * 15 9 7 18 18 C 1.33118 * 119.99997 * 185.21116 * 17 15 9 19 19 C 1.50704 * 120.00091 * 15.41124 * 18 17 15 20 20 H 1.08997 * 109.86945 * 9.88958 * 19 18 17 21 21 C 1.54099 * 109.87831 * 130.89591 * 19 18 17 22 22 C 1.54808 * 104.18872 * 121.45445 * 21 19 18 23 23 C 1.54996 * 102.09094 * 20.87732 * 22 21 19 24 24 O 1.43744 * 109.87754 * 248.72462 * 19 18 17 25 25 H 0.96990 * 120.00329 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46614 * 28.55048 * 10 9 7 27 27 H 1.08998 * 109.46900 * 148.54519 * 10 9 7 28 28 H 1.09010 * 109.46927 * 299.99862 * 11 10 9 29 29 H 1.08998 * 109.47614 * 59.99878 * 11 10 9 30 30 H 0.96700 * 117.00129 * 179.97438 * 14 12 11 31 31 H 1.08001 * 119.99517 * 4.94166 * 17 15 9 32 32 H 1.07997 * 120.00092 * 195.40725 * 18 17 15 33 33 H 1.08999 * 110.48243 * 240.13043 * 21 19 18 34 34 H 1.09003 * 110.48659 * 2.64060 * 21 19 18 35 35 H 1.09004 * 110.90637 * 139.07506 * 22 21 19 36 36 H 1.09003 * 110.90369 * 262.67856 * 22 21 19 37 37 H 1.09005 * 110.61457 * 81.48052 * 23 22 21 38 38 H 1.08999 * 110.61618 * 204.31556 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.7074 1.3465 -0.0006 5 1 1.8887 2.3965 -1.2125 6 1 1.8886 2.3964 1.2125 7 6 2.0089 -1.2044 0.0005 8 1 3.0114 -1.2493 -0.3988 9 7 1.4230 -2.3324 0.5068 10 6 0.4898 -2.2313 1.6316 11 6 1.2567 -2.3871 2.9463 12 6 0.2966 -2.2837 4.1032 13 8 -0.8802 -2.1034 3.8973 14 8 0.7489 -2.3920 5.3624 15 6 1.7046 -3.5365 -0.0290 16 8 1.1833 -4.5395 0.4209 17 6 2.6405 -3.6379 -1.1575 18 6 2.8395 -4.8114 -1.7537 19 6 1.8769 -5.9474 -1.5216 20 1 0.9972 -5.5849 -0.9899 21 6 1.4571 -6.5624 -2.8708 22 6 1.8811 -8.0471 -2.7593 23 6 1.9823 -8.2416 -1.2250 24 8 2.5189 -6.9843 -0.7607 25 1 -0.4850 0.8399 -0.0004 26 1 -0.0007 -1.2580 1.6103 27 1 -0.2604 -3.0180 1.5531 28 1 1.7473 -3.3604 2.9675 29 1 2.0070 -1.6003 3.0248 30 1 0.0954 -2.3186 6.0714 31 1 3.1634 -2.7595 -1.5059 32 1 3.6908 -4.9492 -2.4038 33 1 0.3786 -6.4829 -3.0071 34 1 1.9816 -6.0743 -3.6922 35 1 1.1208 -8.7018 -3.1852 36 1 2.8469 -8.2127 -3.2370 37 1 0.9967 -8.4205 -0.7950 38 1 2.6587 -9.0622 -0.9859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:25 Heat of formation + Delta-G solvation = -140.348820 kcal Electronic energy + Delta-G solvation = -22666.204301 eV Core-core repulsion = 19088.899353 eV Total energy + Delta-G solvation = -3577.304948 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84398 -39.27345 -38.31835 -35.83216 -35.15973 -32.85948 -31.96155 -31.62009 -30.67498 -27.99271 -25.30040 -24.49458 -22.49904 -21.45424 -20.77669 -19.95935 -18.95976 -17.74703 -16.72904 -16.52960 -16.02512 -15.74854 -15.51415 -15.19540 -14.76019 -14.52525 -13.92285 -13.58034 -13.33668 -13.05965 -12.68431 -12.58820 -12.41737 -12.16509 -11.76050 -11.43865 -11.36860 -11.17068 -11.11465 -11.00274 -10.95744 -10.50988 -10.44291 -10.35483 -10.14446 -10.01702 -9.42408 -9.25026 -8.73439 -8.04665 -7.64668 -6.49847 -4.12703 2.09112 2.67271 3.05963 3.17189 3.20382 3.43839 4.00868 4.24618 4.51213 4.77777 4.86669 4.94808 5.01967 5.22977 5.45279 5.60050 5.63310 5.77205 5.82373 5.90787 5.92450 5.94497 6.06410 6.13116 6.22904 6.28884 6.34538 6.72030 6.77639 6.84476 6.98364 7.24248 7.29349 7.41489 7.43937 7.77282 8.24230 8.31409 8.96538 9.39321 9.83109 10.50480 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.005550 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.073989 B = 5043.512978 C = 6546.263758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.045 3.955 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.424 5.424 10 C 0.122 3.878 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.515 6.515 14 O -0.524 6.524 15 C 0.485 3.515 16 O -0.590 6.590 17 C -0.142 4.142 18 C -0.121 4.121 19 C 0.084 3.916 20 H 0.125 0.875 21 C -0.152 4.152 22 C -0.154 4.154 23 C 0.045 3.955 24 O -0.363 6.363 25 H 0.272 0.728 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.401 0.599 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -6.662 -0.519 7.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.163 4.163 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.478 4.478 8 H 0.115 0.885 9 N -0.140 5.140 10 C -0.002 4.002 11 C -0.163 4.163 12 C 0.326 3.674 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.277 3.723 16 O -0.478 6.478 17 C -0.163 4.163 18 C -0.142 4.142 19 C 0.027 3.973 20 H 0.142 0.858 21 C -0.190 4.190 22 C -0.192 4.192 23 C -0.032 4.032 24 O -0.282 6.282 25 H 0.083 0.917 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.259 0.741 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.471 -6.898 -0.502 7.738 hybrid contribution -0.090 1.050 0.182 1.069 sum 3.381 -5.849 -0.320 6.763 Atomic orbital electron populations 1.69947 1.06441 1.28205 1.43313 1.25381 0.94949 1.00075 0.95871 0.86150 0.80292 0.81798 0.78170 1.18922 1.20594 1.20376 1.19492 0.99232 0.86034 1.43042 0.88549 1.43388 1.39151 1.05371 1.26103 1.21232 0.91307 1.05956 0.81741 1.21840 0.98289 1.05218 0.90991 1.23775 0.88915 0.71388 0.83345 1.90700 1.19077 1.44973 1.85491 1.84592 1.46324 1.85229 1.17426 1.18603 0.84855 0.83861 0.84945 1.90529 1.56687 1.35789 1.64826 1.22951 0.99558 0.97888 0.95927 1.23340 0.97495 0.93866 0.99467 1.22659 0.97465 0.86837 0.90299 0.85775 1.23071 1.01746 0.95144 0.99051 1.23117 1.01776 0.96780 0.97535 1.23439 0.98910 0.88340 0.92553 1.88943 1.64403 1.13996 1.60843 0.91706 0.86524 0.91436 0.88260 0.87750 0.74142 0.85163 0.86910 0.90950 0.90884 0.90869 0.91006 0.92642 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.80 11.42 55.50 0.63 -21.17 16 2 C 0.05 1.09 4.88 -17.45 -0.09 1.00 16 3 Si 0.91 18.55 29.62 -169.99 -5.04 13.51 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.35 -8.45 8.61 -15.02 -0.13 -8.58 16 8 H 0.10 2.19 6.54 -52.49 -0.34 1.85 16 9 N -0.42 -10.31 2.54 -116.20 -0.30 -10.60 16 10 C 0.12 2.89 4.27 -4.04 -0.02 2.87 16 11 C -0.12 -2.47 6.13 -27.88 -0.17 -2.64 16 12 C 0.48 8.97 8.33 36.01 0.30 9.27 16 13 O -0.51 -11.04 16.74 -18.75 -0.31 -11.36 16 14 O -0.52 -7.61 13.42 -39.24 -0.53 -8.13 16 15 C 0.49 11.59 7.40 -12.73 -0.09 11.49 16 16 O -0.59 -15.01 12.84 5.22 0.07 -14.95 16 17 C -0.14 -2.90 9.27 -37.83 -0.35 -3.26 16 18 C -0.12 -2.20 8.99 -36.09 -0.32 -2.53 16 19 C 0.08 1.55 2.92 -27.31 -0.08 1.47 16 20 H 0.13 2.74 4.94 -52.37 -0.26 2.48 16 21 C -0.15 -2.19 6.63 -25.20 -0.17 -2.36 16 22 C -0.15 -1.88 7.15 -24.72 -0.18 -2.05 16 23 C 0.04 0.63 7.72 38.21 0.29 0.93 16 24 O -0.36 -6.89 11.17 -35.23 -0.39 -7.29 16 25 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 26 H 0.12 3.00 5.32 -51.93 -0.28 2.72 16 27 H 0.07 1.71 7.42 -51.93 -0.39 1.32 16 28 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 29 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 30 H 0.40 3.85 9.10 45.56 0.41 4.27 16 31 H 0.13 2.47 6.40 -52.49 -0.34 2.14 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -30.69 322.16 -6.11 -36.80 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -4.10 Total: 12.69 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.00 Total: 5.63 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.34 Total: -31.77 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.17 Total: -41.72 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.04 Total: 13.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.69 -6.11 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.545 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds