Wall clock time and date at job start Tue Mar 31 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48507 * 109.47340 * 273.30056 * 3 2 1 5 5 H 1.48502 * 109.47038 * 33.29717 * 3 2 1 6 6 H 1.48494 * 109.47457 * 153.29797 * 3 2 1 7 7 C 1.39074 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00061 * 339.22124 * 7 2 1 9 9 N 1.36818 * 119.99619 * 159.22507 * 7 2 1 10 10 C 1.46506 * 120.00003 * 322.51674 * 9 7 2 11 11 C 1.53005 * 109.46760 * 265.56521 * 10 9 7 12 12 C 1.50702 * 109.46660 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00164 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99909 * 179.97438 * 12 11 10 15 15 C 1.34777 * 120.00270 * 142.51754 * 9 7 2 16 16 O 1.21655 * 120.00249 * 179.97438 * 15 9 7 17 17 C 1.46951 * 119.99594 * 359.97438 * 15 9 7 18 18 C 1.33127 * 120.00193 * 186.53513 * 17 15 9 19 19 C 1.50696 * 119.99497 * 7.99823 * 18 17 15 20 20 H 1.09000 * 110.33504 * 21.78077 * 19 18 17 21 21 C 1.54487 * 110.37263 * 259.53594 * 19 18 17 22 22 C 1.54509 * 104.06059 * 217.19303 * 21 19 18 23 23 C 1.54475 * 104.06463 * 359.97438 * 22 21 19 24 24 O 1.44425 * 110.37330 * 144.03841 * 19 18 17 25 25 H 0.97003 * 119.99881 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47075 * 25.56360 * 10 9 7 27 27 H 1.09000 * 109.46994 * 145.56864 * 10 9 7 28 28 H 1.09000 * 109.46883 * 299.99581 * 11 10 9 29 29 H 1.08995 * 109.47503 * 59.99809 * 11 10 9 30 30 H 0.96696 * 117.00375 * 179.97438 * 14 12 11 31 31 H 1.08005 * 120.00302 * 6.53720 * 17 15 9 32 32 H 1.07994 * 120.00410 * 188.27830 * 18 17 15 33 33 H 1.09002 * 110.51017 * 335.83219 * 21 19 18 34 34 H 1.08997 * 110.51244 * 98.41352 * 21 19 18 35 35 H 1.09001 * 110.51439 * 118.64412 * 22 21 19 36 36 H 1.09008 * 110.51151 * 241.35189 * 22 21 19 37 37 H 1.09008 * 110.37516 * 142.81084 * 23 22 21 38 38 H 1.09005 * 110.37832 * 265.14710 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4253 2.0867 -1.3978 5 1 1.4816 2.6315 0.7686 6 1 3.5782 1.4211 0.6291 7 6 2.0089 -1.2044 -0.0005 8 1 1.5215 -2.1094 0.3309 9 7 3.3103 -1.2428 -0.4208 10 6 3.7416 -0.4093 -1.5459 11 6 3.6693 -1.2225 -2.8400 12 6 4.1135 -0.3653 -3.9972 13 8 4.4526 0.7785 -3.8065 14 8 4.1325 -0.8727 -5.2397 15 6 4.1957 -2.0472 0.2001 16 8 5.3528 -2.0816 -0.1740 17 6 3.7632 -2.8827 1.3289 18 6 4.6604 -3.5777 2.0249 19 6 6.1321 -3.3711 1.7749 20 1 6.3050 -2.3995 1.3121 21 6 6.6892 -4.5000 0.8795 22 6 8.1024 -4.7650 1.4452 23 6 8.2321 -3.7645 2.6150 24 8 6.8718 -3.4781 3.0107 25 1 -0.4850 0.8401 0.0004 26 1 3.0884 0.4595 -1.6258 27 1 4.7672 -0.0790 -1.3812 28 1 4.3226 -2.0913 -2.7601 29 1 2.6438 -1.5529 -3.0047 30 1 4.4246 -0.2848 -5.9497 31 1 2.7174 -2.9331 1.5940 32 1 4.3336 -4.2927 2.7653 33 1 6.0708 -5.3938 0.9627 34 1 6.7464 -4.1714 -0.1582 35 1 8.1826 -5.7897 1.8079 36 1 8.8605 -4.5666 0.6875 37 1 8.7808 -4.2161 3.4416 38 1 8.7289 -2.8532 2.2817 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:29 Heat of formation + Delta-G solvation = -137.543733 kcal Electronic energy + Delta-G solvation = -22827.914032 eV Core-core repulsion = 19250.730722 eV Total energy + Delta-G solvation = -3577.183310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08351 -39.46273 -38.55397 -36.04527 -35.39005 -33.04503 -32.27521 -31.68835 -30.94486 -28.06215 -25.18626 -25.02665 -22.73859 -21.51386 -20.90364 -20.29997 -18.83171 -17.94175 -16.87794 -16.74072 -16.36595 -15.97656 -15.65746 -15.24508 -15.11762 -14.68626 -14.16085 -13.54967 -13.44363 -13.20046 -12.89969 -12.66110 -12.52783 -12.41570 -12.01707 -11.85768 -11.45083 -11.35325 -11.24597 -11.16705 -11.02890 -10.74497 -10.37689 -10.34976 -10.20673 -9.95625 -9.64329 -9.27650 -8.78061 -8.46317 -7.91301 -6.61263 -4.21740 1.99698 2.46745 3.06531 3.20422 3.23304 3.28071 3.98682 4.04201 4.33001 4.45316 4.82680 4.88084 5.01112 5.19001 5.30533 5.45787 5.47944 5.64024 5.66979 5.75529 5.84373 5.88942 5.98707 6.00475 6.10224 6.19727 6.26217 6.32692 6.43284 6.56021 6.68954 6.86087 7.03649 7.18255 7.30783 7.92118 8.07952 8.12034 8.79990 9.17782 9.50009 10.48016 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.005897 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.894481 B = 4747.415702 C = 5956.672531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.071 3.929 3 Si 0.869 3.131 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.353 4.353 8 H 0.111 0.889 9 N -0.450 5.450 10 C 0.111 3.889 11 C -0.122 4.122 12 C 0.484 3.516 13 O -0.520 6.520 14 O -0.520 6.520 15 C 0.500 3.500 16 O -0.591 6.591 17 C -0.154 4.154 18 C -0.106 4.106 19 C 0.085 3.915 20 H 0.123 0.877 21 C -0.133 4.133 22 C -0.155 4.155 23 C 0.048 3.952 24 O -0.384 6.384 25 H 0.278 0.722 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.404 0.596 31 H 0.139 0.861 32 H 0.119 0.881 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.993 -6.010 -2.408 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.138 4.138 3 Si 0.696 3.304 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.128 0.872 9 N -0.168 5.168 10 C -0.013 4.013 11 C -0.161 4.161 12 C 0.327 3.673 13 O -0.408 6.408 14 O -0.331 6.331 15 C 0.293 3.707 16 O -0.479 6.479 17 C -0.175 4.175 18 C -0.126 4.126 19 C 0.029 3.971 20 H 0.140 0.860 21 C -0.171 4.171 22 C -0.192 4.192 23 C -0.030 4.030 24 O -0.303 6.303 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.261 0.739 31 H 0.156 0.844 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.185 -5.811 -2.016 11.055 hybrid contribution 0.283 1.243 -0.671 1.441 sum 9.469 -4.568 -2.687 10.851 Atomic orbital electron populations 1.69711 1.06294 1.28560 1.43996 1.25365 0.95116 0.98603 0.94727 0.87066 0.81187 0.83397 0.78743 1.19384 1.21186 1.18327 1.19096 0.85072 0.96737 1.47035 0.87192 1.43612 1.09702 1.38059 1.25405 1.21483 1.01572 0.93546 0.84680 1.21746 1.04958 0.99442 0.89946 1.23712 0.73360 0.86761 0.83484 1.90702 1.45052 1.19834 1.85196 1.84578 1.80802 1.49330 1.18435 1.18595 0.84364 0.83535 0.84189 1.90500 1.18048 1.71560 1.67830 1.22832 1.00999 0.96816 0.96816 1.23243 0.93357 0.97309 0.98725 1.22835 0.89284 1.01706 0.83244 0.86016 1.22762 0.94695 0.98541 1.01100 1.22935 0.98064 0.99920 0.98315 1.23300 0.85377 0.97415 0.96861 1.89100 1.19235 1.92568 1.29436 0.91185 0.90230 0.90288 0.87355 0.86764 0.73851 0.84371 0.86269 0.91657 0.89696 0.91295 0.90956 0.89852 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.51 13.95 55.50 0.77 -21.74 16 2 C 0.07 1.80 5.31 -17.45 -0.09 1.71 16 3 Si 0.87 20.40 25.01 -169.99 -4.25 16.15 16 4 H -0.27 -6.25 6.60 56.52 0.37 -5.88 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.35 -8.62 8.96 -15.02 -0.13 -8.76 16 8 H 0.11 2.76 6.84 -52.49 -0.36 2.40 16 9 N -0.45 -10.20 2.19 -116.21 -0.25 -10.45 16 10 C 0.11 2.39 3.28 -4.04 -0.01 2.37 16 11 C -0.12 -2.20 6.11 -27.88 -0.17 -2.37 16 12 C 0.48 8.22 8.33 36.01 0.30 8.52 16 13 O -0.52 -10.34 16.74 -18.75 -0.31 -10.66 16 14 O -0.52 -6.82 13.42 -39.25 -0.53 -7.35 16 15 C 0.50 10.87 7.41 -12.73 -0.09 10.77 16 16 O -0.59 -13.06 12.03 5.23 0.06 -13.00 16 17 C -0.15 -2.97 9.29 -37.83 -0.35 -3.32 16 18 C -0.11 -1.84 9.18 -36.09 -0.33 -2.17 16 19 C 0.09 1.50 2.69 -27.10 -0.07 1.42 16 20 H 0.12 2.48 5.24 -52.01 -0.27 2.21 16 21 C -0.13 -2.00 6.41 -25.16 -0.16 -2.16 16 22 C -0.15 -1.90 7.09 -25.17 -0.18 -2.08 16 23 C 0.05 0.63 7.63 37.93 0.29 0.92 16 24 O -0.38 -6.57 11.34 -35.23 -0.40 -6.97 16 25 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.08 1.83 3.26 -51.93 -0.17 1.66 16 27 H 0.08 1.75 7.52 -51.93 -0.39 1.36 16 28 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 29 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 30 H 0.40 3.36 9.10 45.56 0.41 3.77 16 31 H 0.14 2.60 6.48 -52.48 -0.34 2.26 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.06 0.92 7.86 -51.93 -0.41 0.51 16 34 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -29.56 316.24 -5.19 -34.75 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.04 Total: 9.64 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.01 Total: 4.86 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.52 Total: -32.19 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -1.18 Total: -37.98 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.25 Total: 16.15 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.56 -5.19 -34.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.791 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds