Wall clock time and date at job start Tue Mar 31 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86791 * 120.00144 * 2 1 4 4 H 1.48504 * 109.47109 * 273.35379 * 3 2 1 5 5 H 1.48500 * 109.47292 * 33.35400 * 3 2 1 6 6 H 1.48497 * 109.47329 * 153.35320 * 3 2 1 7 7 C 1.37876 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00190 * 2.22126 * 7 2 1 9 9 C 1.50694 * 120.00178 * 182.22491 * 7 2 1 10 10 C 1.52996 * 115.55289 * 91.53962 * 9 7 2 11 11 N 1.46507 * 109.46864 * 65.33255 * 10 9 7 12 12 C 1.34777 * 120.00138 * 185.30776 * 11 10 9 13 13 O 1.21289 * 119.99571 * 354.72003 * 12 11 10 14 14 C 1.50694 * 120.00131 * 174.99005 * 12 11 10 15 15 C 1.50700 * 110.27588 * 274.62553 * 14 12 11 16 16 O 1.20829 * 119.99601 * 264.29670 * 15 14 12 17 17 O 1.34218 * 120.00349 * 84.29733 * 15 14 12 18 18 C 1.54951 * 110.30863 * 152.53355 * 14 12 11 19 19 C 1.55566 * 100.82353 * 277.47535 * 18 14 12 20 20 C 1.54374 * 102.27788 * 325.88527 * 19 18 14 21 21 O 1.43242 * 107.59188 * 21.35597 * 20 19 18 22 22 C 1.53000 * 117.50030 * 237.21584 * 9 7 2 23 23 C 1.52999 * 117.49697 * 305.87515 * 9 7 2 24 24 H 0.96997 * 119.99558 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47554 * 305.33523 * 10 9 7 26 26 H 1.09007 * 109.47579 * 185.32727 * 10 9 7 27 27 H 0.97001 * 119.99660 * 5.30905 * 11 10 9 28 28 H 0.96707 * 117.00620 * 180.02562 * 17 15 14 29 29 H 1.08998 * 111.12645 * 35.44756 * 18 14 12 30 30 H 1.08998 * 111.12103 * 159.61258 * 18 14 12 31 31 H 1.08996 * 110.83796 * 207.68123 * 19 18 14 32 32 H 1.09004 * 111.00933 * 84.16391 * 19 18 14 33 33 H 1.09001 * 109.83360 * 261.84021 * 20 19 18 34 34 H 1.09003 * 109.83681 * 140.86544 * 20 19 18 35 35 H 1.08995 * 117.49970 * 214.99912 * 22 9 7 36 36 H 1.09001 * 117.49837 * 0.02562 * 22 9 7 37 37 H 1.08998 * 117.50060 * 359.97171 * 23 9 7 38 38 H 1.08999 * 117.50329 * 144.97375 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4258 2.0873 -1.3977 5 1 1.4840 2.6311 0.7698 6 1 3.5804 1.4207 0.6279 7 6 2.0045 -1.1941 0.0005 8 1 1.4651 -2.1290 -0.0353 9 6 3.5106 -1.1946 0.0512 10 6 4.1238 -1.2581 1.4515 11 7 3.7928 -2.5435 2.0716 12 6 4.1375 -2.7824 3.3525 13 8 4.8045 -1.9733 3.9620 14 6 3.6992 -4.0575 4.0255 15 6 2.3149 -3.8962 4.5990 16 8 2.1735 -3.5969 5.7610 17 8 1.2391 -4.0850 3.8189 18 6 4.7011 -4.4488 5.1408 19 6 5.8009 -5.1665 4.3069 20 6 4.9770 -5.8439 3.1909 21 8 3.7282 -5.1492 3.0924 22 6 4.2553 -1.9080 -1.0791 23 6 4.2534 -0.3789 -1.0088 24 1 -0.4849 0.8401 -0.0004 25 1 3.7240 -0.4474 2.0604 26 1 5.2068 -1.1580 1.3788 27 1 3.3256 -3.2227 1.5603 28 1 0.3720 -3.9699 4.2313 29 1 5.0982 -3.5649 5.6400 30 1 4.2440 -5.1307 5.8579 31 1 6.3217 -5.9099 4.9103 32 1 6.5048 -4.4476 3.8875 33 1 4.7997 -6.8890 3.4446 34 1 5.5125 -5.7777 2.2438 35 1 5.1819 -2.4226 -0.8251 36 1 3.6558 -2.3765 -1.8596 37 1 3.6527 0.1578 -1.7432 38 1 5.1787 0.1128 -0.7086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:49 Heat of formation + Delta-G solvation = -139.619992 kcal Electronic energy + Delta-G solvation = -23520.889863 eV Core-core repulsion = 19943.616519 eV Total energy + Delta-G solvation = -3577.273343 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21651 -39.37728 -38.35086 -37.07085 -36.12586 -33.69550 -32.24424 -32.12888 -30.58563 -26.90349 -25.41672 -24.49863 -22.32756 -21.98858 -21.72460 -19.81608 -19.28766 -18.14751 -17.89431 -17.31038 -16.47283 -15.78111 -15.58088 -15.47038 -15.11555 -14.83888 -14.29793 -14.07956 -13.69530 -13.26034 -13.10326 -12.76541 -12.54730 -12.21357 -12.03667 -11.99261 -11.80685 -11.48113 -11.33272 -11.19130 -10.96102 -10.75862 -10.53818 -10.46307 -10.23116 -9.66637 -9.32999 -9.21351 -8.68246 -8.57829 -8.45616 -6.16604 -4.21137 1.89759 2.52722 3.04793 3.25374 3.29419 3.37553 3.41785 3.55183 4.22630 4.38049 4.63394 4.69213 4.74914 4.94331 5.00537 5.12029 5.21618 5.41139 5.52245 5.57187 5.62616 5.80756 5.87902 5.97079 6.01453 6.13975 6.35555 6.38321 6.41874 6.50139 6.64587 6.89017 6.98247 7.04208 7.65158 7.85640 7.95380 8.40275 8.48154 8.85226 9.45958 10.94612 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.006009 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.926968 B = 4658.825503 C = 5180.476526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.079 3.921 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.257 1.257 7 C -0.490 4.490 8 H 0.081 0.919 9 C -0.016 4.016 10 C 0.155 3.845 11 N -0.677 5.677 12 C 0.504 3.496 13 O -0.536 6.536 14 C 0.103 3.897 15 C 0.503 3.497 16 O -0.499 6.499 17 O -0.487 6.487 18 C -0.120 4.120 19 C -0.156 4.156 20 C 0.044 3.956 21 O -0.346 6.346 22 C -0.179 4.179 23 C -0.192 4.192 24 H 0.265 0.735 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.414 0.586 28 H 0.414 0.586 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 -11.124 6.171 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.124 4.124 3 Si 0.708 3.292 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.181 1.181 7 C -0.527 4.527 8 H 0.099 0.901 9 C -0.017 4.017 10 C 0.031 3.969 11 N -0.326 5.326 12 C 0.285 3.715 13 O -0.414 6.414 14 C 0.058 3.942 15 C 0.343 3.657 16 O -0.387 6.387 17 O -0.298 6.298 18 C -0.158 4.158 19 C -0.193 4.193 20 C -0.032 4.032 21 O -0.265 6.265 22 C -0.216 4.216 23 C -0.230 4.230 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.250 0.750 28 H 0.273 0.727 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.712 -10.437 6.559 15.693 hybrid contribution -0.369 0.822 0.018 0.901 sum 9.343 -9.615 6.577 14.933 Atomic orbital electron populations 1.69890 1.06335 1.27190 1.49552 1.24995 0.94632 0.99088 0.93713 0.86858 0.80775 0.83394 0.78213 1.20557 1.22206 1.18105 1.20201 0.86041 0.94679 1.51800 0.90107 1.19619 0.95211 1.00848 0.86016 1.21237 0.97037 0.84011 0.94568 1.45807 1.56769 1.18704 1.11341 1.20024 0.81374 0.86896 0.83167 1.90702 1.38928 1.47089 1.64719 1.22352 0.91117 0.89149 0.91537 1.22411 0.86503 0.72859 0.83902 1.90747 1.86600 1.43561 1.17799 1.84626 1.17741 1.81482 1.45903 1.23147 0.93855 1.02884 0.95930 1.23233 0.98448 1.00558 0.97071 1.23342 0.84018 0.96399 0.99465 1.88605 1.37096 1.42284 1.58478 1.22900 1.01172 0.93818 1.03706 1.22934 1.01513 0.94095 1.04411 0.92505 0.91484 0.93494 0.74998 0.72651 0.86994 0.88850 0.88950 0.89681 0.90207 0.90241 0.90879 0.89237 0.89170 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.33 24.81 -169.99 -4.22 17.11 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -5.94 6.10 56.52 0.34 -5.59 16 7 C -0.49 -12.88 9.35 -34.44 -0.32 -13.20 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 9 C -0.02 -0.34 0.84 -155.67 -0.13 -0.47 16 10 C 0.15 3.23 5.31 -4.04 -0.02 3.21 16 11 N -0.68 -12.94 5.41 -60.29 -0.33 -13.27 16 12 C 0.50 9.32 6.50 -10.99 -0.07 9.25 16 13 O -0.54 -11.16 15.83 5.55 0.09 -11.07 16 14 C 0.10 1.59 1.06 -91.90 -0.10 1.49 16 15 C 0.50 8.24 7.19 36.01 0.26 8.50 16 16 O -0.50 -8.88 17.02 -18.75 -0.32 -9.20 16 17 O -0.49 -7.26 13.25 -43.81 -0.58 -7.84 16 18 C -0.12 -1.51 5.46 -24.34 -0.13 -1.64 16 19 C -0.16 -1.50 6.80 -24.65 -0.17 -1.67 16 20 C 0.04 0.44 7.79 37.88 0.29 0.74 16 21 O -0.35 -4.82 9.94 -46.61 -0.46 -5.28 16 22 C -0.18 -3.37 9.96 -26.69 -0.27 -3.63 16 23 C -0.19 -3.88 7.12 -26.69 -0.19 -4.07 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.07 1.55 7.84 -51.93 -0.41 1.15 16 26 H 0.05 0.91 8.09 -51.92 -0.42 0.49 16 27 H 0.41 7.72 7.92 -40.82 -0.32 7.40 16 28 H 0.41 4.25 9.10 45.56 0.41 4.66 16 29 H 0.11 1.54 7.19 -51.93 -0.37 1.16 16 30 H 0.09 1.04 7.94 -51.93 -0.41 0.62 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 37 H 0.09 1.92 6.55 -51.93 -0.34 1.58 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -32.59 321.37 -5.58 -38.17 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.43 Total: 11.53 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.94 Total: 0.58 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.45 Total: -38.84 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.28 Total: -33.40 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.22 Total: 17.11 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.59 -5.58 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.450 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds