Wall clock time and date at job start Tue Mar 31 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33629 * 125.80664 * 2 1 4 4 C 1.34216 * 110.92593 * 180.15800 * 3 2 1 5 5 C 1.50705 * 125.43036 * 179.87978 * 4 3 2 6 6 N 1.46900 * 109.46826 * 269.69277 * 5 4 3 7 7 C 1.46903 * 110.99972 * 66.04586 * 6 5 4 8 8 C 1.46896 * 110.99776 * 189.99689 * 6 5 4 9 9 C 1.53001 * 109.47230 * 170.00130 * 8 6 5 10 10 H 1.08998 * 109.47065 * 59.99662 * 9 8 6 11 11 O 1.42908 * 109.46829 * 300.00177 * 9 8 6 12 12 C 1.50697 * 109.46995 * 180.02562 * 9 8 6 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 9 8 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00035 * 179.72339 * 14 12 9 16 16 Si 1.86803 * 119.99853 * 359.72191 * 14 12 9 17 17 H 1.48500 * 109.46986 * 90.00256 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00273 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00102 * 16 14 12 20 20 C 1.34156 * 109.14413 * 359.60973 * 4 3 2 21 21 C 1.36498 * 125.81285 * 179.73652 * 2 1 3 22 22 C 1.47233 * 127.19648 * 359.97438 * 21 2 1 23 23 O 1.21537 * 120.00097 * 359.97438 * 22 21 2 24 24 O 1.34774 * 119.99850 * 180.02562 * 22 21 2 25 25 H 1.08995 * 109.47276 * 270.25934 * 1 2 3 26 26 H 1.08994 * 109.47609 * 30.26759 * 1 2 3 27 27 H 1.09010 * 109.46778 * 150.26283 * 1 2 3 28 28 H 1.08996 * 109.46896 * 149.69033 * 5 4 3 29 29 H 1.09006 * 109.46741 * 29.69082 * 5 4 3 30 30 H 1.08996 * 109.46926 * 183.95025 * 7 6 5 31 31 H 1.08998 * 109.47045 * 303.95299 * 7 6 5 32 32 H 1.09001 * 109.47220 * 63.95437 * 7 6 5 33 33 H 1.08998 * 109.47372 * 49.99981 * 8 6 5 34 34 H 1.09006 * 109.47513 * 290.00152 * 8 6 5 35 35 H 0.96704 * 113.99704 * 299.99964 * 11 9 8 36 36 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 37 37 H 1.08005 * 127.02819 * 180.24716 * 20 4 3 38 38 H 0.96692 * 116.99997 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5859 0.7391 -0.0035 5 6 4.7456 1.7015 -0.0071 6 7 5.1233 2.0079 -1.3932 7 6 4.0543 2.7460 -2.0792 8 6 6.3902 2.7497 -1.4419 9 6 6.8770 2.8332 -2.8900 10 1 6.1309 3.3483 -3.4950 11 8 7.0773 1.5141 -3.4020 12 6 8.1771 3.5937 -2.9399 13 1 8.6103 3.9828 -2.0304 14 6 8.8108 3.7972 -4.1474 15 7 9.9426 4.4656 -4.1916 16 14 8.0618 3.1236 -5.7205 17 1 7.1518 4.1385 -6.3097 18 1 9.1433 2.8074 -6.6878 19 1 7.2949 1.8893 -5.4147 20 6 3.6857 -0.5988 0.0028 21 6 2.3057 -1.1069 0.0051 22 6 1.8754 -2.5150 0.0121 23 8 0.6913 -2.7886 0.0143 24 8 2.7948 -3.5004 0.0171 25 1 -0.3633 0.0047 1.0276 26 1 -0.3634 0.8875 -0.5179 27 1 -0.3633 -0.8924 -0.5098 28 1 5.5932 1.2510 0.5094 29 1 4.4564 2.6207 0.5024 30 1 4.3301 2.8987 -3.1226 31 1 3.1276 2.1745 -2.0282 32 1 3.9122 3.7126 -1.5959 33 1 7.1364 2.2346 -0.8370 34 1 6.2375 3.7559 -1.0514 35 1 7.7301 0.9966 -2.9109 36 1 10.3886 4.6084 -5.0411 37 1 4.5939 -1.1833 0.0058 38 1 2.4642 -4.4091 0.0220 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608046233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:31 Heat of formation + Delta-G solvation = -117.807564 kcal Electronic energy + Delta-G solvation = -22184.454534 eV Core-core repulsion = 18608.127049 eV Total energy + Delta-G solvation = -3576.327486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.81164 -40.02704 -37.76245 -36.28056 -35.30306 -33.28225 -32.34546 -32.23835 -29.45818 -28.24306 -26.47837 -25.41341 -24.09586 -22.36271 -21.60284 -20.11429 -19.56914 -18.24115 -17.40695 -16.98778 -16.70240 -15.77346 -15.58551 -15.15058 -14.91077 -14.87214 -14.53662 -14.02969 -13.67341 -13.42727 -13.32101 -13.14075 -13.05180 -12.68496 -12.55843 -12.10153 -11.77963 -11.70678 -11.58016 -11.33728 -10.98678 -10.92514 -10.81950 -10.39647 -10.00000 -9.91437 -9.04125 -8.67674 -8.61452 -8.28662 -7.91032 -6.14519 -4.26158 0.95310 1.85181 2.45772 2.88671 2.96077 3.38981 3.49062 3.76960 4.19486 4.38749 4.53360 4.53589 4.97559 5.01776 5.15232 5.19324 5.20936 5.32566 5.43255 5.51569 5.58215 5.72197 5.80194 5.85119 5.91370 5.97555 6.18482 6.21883 6.27395 6.30088 6.53649 6.91479 7.16357 7.25832 7.43527 7.63704 7.72537 8.27446 8.81720 9.10513 9.50541 10.96013 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027538 B = 0.003575 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.550318 B = 7829.848146 C = 8129.965525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.091 3.909 3 O -0.168 6.168 4 C 0.004 3.996 5 C 0.131 3.869 6 N -0.530 5.530 7 C 0.024 3.976 8 C 0.040 3.960 9 C 0.202 3.798 10 H 0.053 0.947 11 O -0.570 6.570 12 C -0.567 4.567 13 H 0.071 0.929 14 C 0.084 3.916 15 N -0.893 5.893 16 Si 0.870 3.130 17 H -0.288 1.288 18 H -0.296 1.296 19 H -0.214 1.214 20 C -0.146 4.146 21 C -0.240 4.240 22 C 0.563 3.437 23 O -0.525 6.525 24 O -0.507 6.507 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.354 0.646 36 H 0.265 0.735 37 H 0.164 0.836 38 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.552 -10.778 10.405 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.037 3.963 3 O -0.064 6.064 4 C -0.044 4.044 5 C 0.003 3.997 6 N -0.254 5.254 7 C -0.124 4.124 8 C -0.087 4.087 9 C 0.144 3.856 10 H 0.071 0.929 11 O -0.375 6.375 12 C -0.605 4.605 13 H 0.090 0.910 14 C -0.120 4.120 15 N -0.530 5.530 16 Si 0.696 3.304 17 H -0.215 1.215 18 H -0.223 1.223 19 H -0.137 1.137 20 C -0.166 4.166 21 C -0.243 4.243 22 C 0.409 3.591 23 O -0.417 6.417 24 O -0.318 6.318 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.200 0.800 36 H 0.074 0.926 37 H 0.181 0.819 38 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -17.035 -10.316 9.627 22.120 hybrid contribution 0.064 -0.225 0.002 0.234 sum -16.971 -10.541 9.629 22.178 Atomic orbital electron populations 1.20655 0.83709 1.05310 1.04470 1.22747 0.93928 0.83114 0.96473 1.83762 1.17223 1.34491 1.70950 1.22269 0.81616 0.95034 1.05473 1.20631 0.91364 0.95489 0.92209 1.62088 1.04088 1.47293 1.11912 1.22416 0.94096 0.95498 1.00368 1.22910 0.88657 0.95250 1.01874 1.19714 0.95631 0.82079 0.88175 0.92927 1.86679 1.64378 1.27978 1.58448 1.21499 1.06558 1.36830 0.95596 0.91050 1.24979 0.94156 0.93083 0.99802 1.69956 1.16754 1.39616 1.26707 0.87046 0.79583 0.82322 0.81433 1.21505 1.22253 1.13664 1.22566 0.96260 0.93123 1.04660 1.20058 0.94439 0.90215 1.19581 1.19642 0.82815 0.85248 0.71389 1.90860 1.18316 1.84540 1.47956 1.84609 1.41894 1.19535 1.85754 0.89130 0.89904 0.87500 0.87528 0.93313 0.90463 0.92322 0.95820 0.90879 0.94559 0.79978 0.92559 0.81891 0.72922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.89 36.00 0.36 -0.38 16 2 C 0.09 1.08 7.38 -34.94 -0.26 0.82 16 3 O -0.17 -2.18 9.80 7.71 0.08 -2.10 16 4 C 0.00 0.06 5.85 -35.74 -0.21 -0.15 16 5 C 0.13 1.72 5.48 -4.97 -0.03 1.69 16 6 N -0.53 -8.62 4.62 -244.37 -1.13 -9.75 16 7 C 0.02 0.39 9.15 60.07 0.55 0.94 16 8 C 0.04 0.74 4.56 -3.83 -0.02 0.72 16 9 C 0.20 4.56 2.18 -27.88 -0.06 4.50 16 10 H 0.05 1.24 5.99 -51.93 -0.31 0.93 16 11 O -0.57 -12.79 9.99 -35.23 -0.35 -13.14 16 12 C -0.57 -15.34 9.34 -34.44 -0.32 -15.66 16 13 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 14 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 15 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 16 Si 0.87 21.68 26.99 -169.99 -4.59 17.09 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 19 H -0.21 -5.26 5.29 56.52 0.30 -4.96 16 20 C -0.15 -1.89 10.93 -37.45 -0.41 -2.30 16 21 C -0.24 -3.06 6.32 -103.30 -0.65 -3.71 16 22 C 0.56 6.74 8.33 34.39 0.29 7.02 16 23 O -0.53 -6.91 15.64 -19.29 -0.30 -7.21 16 24 O -0.51 -4.80 13.34 -40.69 -0.54 -5.34 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.11 0.99 6.49 -51.92 -0.34 0.65 16 28 H 0.11 1.23 7.93 -51.93 -0.41 0.82 16 29 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.08 1.33 6.47 -51.93 -0.34 1.00 16 31 H 0.06 0.87 6.61 -51.93 -0.34 0.53 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 34 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.35 7.09 9.04 45.56 0.41 7.50 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.16 1.93 8.06 -52.48 -0.42 1.50 16 38 H 0.41 1.83 9.11 45.56 0.42 2.24 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -33.56 323.31 -5.57 -39.13 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.51 Total: 6.87 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -0.86 Total: -4.21 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.36 Total: -35.96 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.12 Total: -27.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.59 Total: 17.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.56 -5.57 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608046233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.678 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds