Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99659 * 2 1 4 4 H 1.48500 * 109.47512 * 270.00147 * 3 2 1 5 5 H 1.48503 * 109.47325 * 30.00389 * 3 2 1 6 6 H 1.48503 * 109.47166 * 150.00166 * 3 2 1 7 7 C 1.38944 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99818 * 197.02276 * 7 2 1 9 9 N 1.37091 * 120.00171 * 17.02247 * 7 2 1 10 10 C 1.46500 * 120.00153 * 11.18241 * 9 7 2 11 11 C 1.50700 * 109.47299 * 272.88590 * 10 9 7 12 12 O 1.20828 * 119.99968 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00257 * 179.97438 * 11 10 9 14 14 C 1.34780 * 119.99995 * 191.19160 * 9 7 2 15 15 O 1.21290 * 120.00204 * 5.67485 * 14 9 7 16 16 C 1.50701 * 120.00093 * 185.68100 * 14 9 7 17 17 H 1.09001 * 110.06943 * 318.83288 * 16 14 9 18 18 O 1.46010 * 110.57421 * 196.15487 * 16 14 9 19 19 C 1.43495 * 107.73780 * 273.85156 * 18 16 14 20 20 C 1.53931 * 106.51900 * 327.37080 * 19 18 16 21 21 H 1.08997 * 112.66241 * 257.24233 * 20 19 18 22 22 C 1.54161 * 109.89300 * 132.75861 * 20 19 18 23 23 C 1.54846 * 104.32332 * 223.77913 * 22 20 19 24 24 C 1.54842 * 102.73572 * 38.18860 * 23 22 20 25 25 C 1.53920 * 110.04600 * 80.28487 * 16 14 9 26 26 H 1.09005 * 111.90151 * 221.59867 * 25 16 14 27 27 H 0.96999 * 120.00023 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46826 * 32.88287 * 10 9 7 29 29 H 1.08995 * 109.47434 * 152.88479 * 10 9 7 30 30 H 0.96698 * 116.99969 * 179.97438 * 13 11 10 31 31 H 1.08996 * 110.05090 * 208.10891 * 19 18 16 32 32 H 1.09005 * 110.09317 * 86.65071 * 19 18 16 33 33 H 1.08996 * 110.46607 * 105.06714 * 22 20 19 34 34 H 1.08996 * 110.57255 * 342.54191 * 22 20 19 35 35 H 1.08998 * 110.75626 * 279.87755 * 23 22 20 36 36 H 1.09003 * 110.91589 * 156.57682 * 23 22 20 37 37 H 1.08999 * 110.45771 * 203.10450 * 24 23 22 38 38 H 1.08994 * 110.57261 * 80.58039 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0534 -1.2238 0.2733 9 7 1.3686 -2.3644 -0.3486 10 6 0.0345 -2.3128 -0.9518 11 6 -1.0080 -2.2874 0.1361 12 8 -0.6712 -2.3106 1.2963 13 8 -2.3108 -2.2391 -0.1836 14 6 1.9663 -3.5535 -0.1358 15 8 3.0238 -3.6034 0.4562 16 6 1.3209 -4.8211 -0.6334 17 1 0.2454 -4.7862 -0.4601 18 8 1.9120 -5.9873 0.0167 19 6 3.0746 -6.3645 -0.7351 20 6 2.7757 -6.0204 -2.2054 21 1 2.5179 -6.8981 -2.7980 22 6 3.9710 -5.2662 -2.8210 23 6 3.3231 -4.1100 -3.6216 24 6 2.1472 -3.6807 -2.7103 25 6 1.6078 -5.0051 -2.1344 26 1 0.7293 -5.3554 -2.6763 27 1 -0.4850 0.8400 0.0004 28 1 -0.0542 -1.4132 -1.5610 29 1 -0.1154 -3.1921 -1.5781 30 1 -2.9423 -2.2248 0.5485 31 1 3.2559 -7.4342 -0.6312 32 1 3.9426 -5.8032 -0.3891 33 1 4.5336 -5.9216 -3.4859 34 1 4.6190 -4.8716 -2.0385 35 1 2.9560 -4.4651 -4.5845 36 1 4.0267 -3.2885 -3.7572 37 1 1.3767 -3.1774 -3.2943 38 1 2.5008 -3.0326 -1.9086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = -145.614301 kcal Electronic energy + Delta-G solvation = -24601.015256 eV Core-core repulsion = 21023.481980 eV Total energy + Delta-G solvation = -3577.533276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.69740 -39.00415 -37.54453 -35.65146 -35.06696 -34.36126 -32.07041 -30.31607 -29.10993 -27.73317 -26.17818 -24.92496 -22.83727 -21.06244 -20.74099 -19.49649 -18.68882 -17.21826 -17.10418 -16.80483 -16.06808 -15.70030 -15.14278 -14.90142 -14.43379 -14.38106 -14.01194 -13.74632 -13.62230 -13.19471 -12.54697 -12.35292 -11.97896 -11.71922 -11.66279 -11.52077 -11.04010 -10.87770 -10.82400 -10.62208 -10.59974 -10.44440 -10.35960 -10.31125 -10.28409 -10.05133 -9.79868 -9.52485 -9.06268 -8.24323 -7.97554 -6.47990 -3.92887 3.09720 3.21297 3.26560 3.43326 3.64959 3.98288 4.19268 4.33289 4.52703 4.58319 4.85640 5.01826 5.10585 5.33718 5.42109 5.51362 5.53338 5.61036 5.69375 5.81287 5.87215 5.93286 5.98982 6.08929 6.13348 6.27516 6.30202 6.45711 6.50022 6.52128 6.63762 6.79377 7.17474 7.48599 7.60278 7.88559 8.31821 9.02823 9.11581 9.26597 9.75825 10.59736 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017860 B = 0.007802 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.367060 B = 3587.990643 C = 4274.457027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.295 4.295 8 H 0.109 0.891 9 N -0.434 5.434 10 C 0.149 3.851 11 C 0.494 3.506 12 O -0.508 6.508 13 O -0.536 6.536 14 C 0.456 3.544 15 O -0.562 6.562 16 C 0.068 3.932 17 H 0.102 0.898 18 O -0.357 6.357 19 C 0.056 3.944 20 C -0.119 4.119 21 H 0.086 0.914 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.111 4.111 26 H 0.091 0.909 27 H 0.272 0.728 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.390 0.610 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 -7.150 -9.313 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.422 4.422 8 H 0.126 0.874 9 N -0.156 5.156 10 C 0.022 3.978 11 C 0.334 3.666 12 O -0.393 6.393 13 O -0.347 6.347 14 C 0.245 3.755 15 O -0.445 6.445 16 C 0.007 3.993 17 H 0.119 0.881 18 O -0.274 6.274 19 C -0.021 4.021 20 C -0.137 4.137 21 H 0.104 0.896 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.184 4.184 25 C -0.130 4.130 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.091 0.909 30 H 0.247 0.753 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.099 -7.142 -8.789 11.325 hybrid contribution -0.387 1.078 0.478 1.241 sum -0.288 -6.064 -8.311 10.292 Atomic orbital electron populations 1.69507 1.06013 1.27745 1.49931 1.25189 0.95400 0.99967 0.96743 0.85762 0.79319 0.80398 0.78279 1.20272 1.21062 1.19412 1.19770 0.95941 0.82462 1.44053 0.87356 1.43666 1.12848 1.05349 1.53731 1.20798 0.81090 1.03704 0.92161 1.23608 0.81209 0.70632 0.91128 1.90611 1.81096 1.45748 1.21823 1.84504 1.18865 1.87285 1.44079 1.20106 0.88013 0.84168 0.83212 1.90538 1.24312 1.85826 1.43775 1.23217 0.98055 0.86670 0.91351 0.88067 1.89027 1.41773 1.44204 1.52437 1.23251 0.90073 0.99727 0.89086 1.22993 0.95392 0.98098 0.97245 0.89607 1.22451 0.96698 0.96856 0.99525 1.22447 0.97577 0.97769 0.97801 1.23100 0.97960 0.96381 1.00982 1.22947 0.98606 0.96690 0.94764 0.89066 0.91681 0.85236 0.90932 0.75339 0.90296 0.91239 0.91971 0.90746 0.92044 0.91487 0.91308 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.76 8.28 55.50 0.46 -22.30 16 2 C 0.03 0.72 5.08 -17.47 -0.09 0.63 16 3 Si 0.94 20.38 29.59 -169.99 -5.03 15.35 16 4 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.30 -7.90 9.28 -14.94 -0.14 -8.03 16 8 H 0.11 3.06 7.31 -52.49 -0.38 2.67 16 9 N -0.43 -10.58 1.02 -116.10 -0.12 -10.70 16 10 C 0.15 3.17 4.15 -5.19 -0.02 3.15 16 11 C 0.49 11.18 6.08 36.01 0.22 11.40 16 12 O -0.51 -13.71 16.69 -18.75 -0.31 -14.02 16 13 O -0.54 -9.84 13.42 -39.26 -0.53 -10.37 16 14 C 0.46 11.01 4.70 -10.98 -0.05 10.95 16 15 O -0.56 -15.55 15.35 -12.68 -0.19 -15.75 16 16 C 0.07 1.35 3.07 -27.40 -0.08 1.26 16 17 H 0.10 1.92 6.95 -51.93 -0.36 1.56 16 18 O -0.36 -7.27 11.03 -53.46 -0.59 -7.86 16 19 C 0.06 0.92 6.87 37.64 0.26 1.18 16 20 C -0.12 -1.67 3.92 -88.52 -0.35 -2.02 16 21 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 22 C -0.12 -1.59 6.38 -25.15 -0.16 -1.75 16 23 C -0.12 -1.60 6.90 -24.79 -0.17 -1.77 16 24 C -0.15 -2.36 4.56 -25.15 -0.11 -2.48 16 25 C -0.11 -1.72 3.33 -88.52 -0.30 -2.02 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.13 2.84 6.45 -51.93 -0.33 2.50 16 29 H 0.07 1.28 5.08 -51.93 -0.26 1.01 16 30 H 0.39 5.61 9.10 45.56 0.41 6.03 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.28 6.59 -51.93 -0.34 0.94 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.15 7.23 -51.93 -0.38 0.77 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 38 H 0.11 2.20 4.16 -51.93 -0.22 1.98 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -33.26 298.95 -6.75 -40.00 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.94 Total: 10.64 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -1.00 Total: 10.50 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.34 Total: -33.00 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -1.62 Total: -48.00 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.26 -6.75 -40.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.612 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds