Wall clock time and date at job start Tue Mar 31 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 119.99639 * 2 1 4 4 H 1.48491 * 109.47066 * 270.00215 * 3 2 1 5 5 H 1.48497 * 109.46971 * 30.00733 * 3 2 1 6 6 H 1.48496 * 109.46588 * 150.00202 * 3 2 1 7 7 C 1.38948 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99710 * 202.29840 * 7 2 1 9 9 N 1.37098 * 120.00312 * 22.30479 * 7 2 1 10 10 C 1.46494 * 120.00095 * 36.04858 * 9 7 2 11 11 C 1.52995 * 109.47299 * 90.00585 * 10 9 7 12 12 C 1.50701 * 109.47170 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00091 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99905 * 179.97438 * 12 11 10 15 15 C 1.34777 * 119.99565 * 216.04998 * 9 7 2 16 16 O 1.21293 * 119.99826 * 184.99935 * 15 9 7 17 17 C 1.50699 * 120.00352 * 4.99717 * 15 9 7 18 18 H 1.08998 * 115.56032 * 13.05365 * 17 15 9 19 19 C 1.53184 * 117.51953 * 158.82258 * 17 15 9 20 20 C 1.52107 * 117.52290 * 227.18945 * 17 15 9 21 21 C 1.53710 * 121.73748 * 3.67946 * 20 17 15 22 22 C 1.54697 * 103.69321 * 143.46429 * 21 20 17 23 23 O 1.44496 * 104.87245 * 23.84562 * 22 21 20 24 24 C 1.44646 * 105.46111 * 320.02285 * 23 22 21 25 25 H 0.96993 * 120.00488 * 354.92266 * 1 2 3 26 26 H 1.09002 * 109.47677 * 329.99822 * 10 9 7 27 27 H 1.09003 * 109.47153 * 210.00055 * 10 9 7 28 28 H 1.08995 * 109.47876 * 59.99469 * 11 10 9 29 29 H 1.09004 * 109.46927 * 299.99120 * 11 10 9 30 30 H 0.96709 * 116.99975 * 179.97438 * 14 12 11 31 31 H 1.08998 * 117.52026 * 214.84420 * 19 17 15 32 32 H 1.08993 * 117.52519 * 359.95835 * 19 17 15 33 33 H 1.08998 * 110.57979 * 262.01945 * 21 20 17 34 34 H 1.08999 * 110.57862 * 24.76402 * 21 20 17 35 35 H 1.09005 * 110.35860 * 142.69333 * 22 21 20 36 36 H 1.09002 * 110.35955 * 264.99490 * 22 21 20 37 37 H 1.08996 * 110.41679 * 280.87657 * 24 23 22 38 38 H 1.08998 * 110.41537 * 158.41541 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0283 -1.2384 0.3543 9 7 1.4004 -2.3461 -0.4517 10 6 0.4655 -2.2825 -1.5778 11 6 1.2310 -2.4791 -2.8878 12 6 0.2692 -2.4143 -4.0462 13 8 -0.9078 -2.2303 -3.8446 14 8 0.7202 -2.5610 -5.3019 15 6 1.6622 -3.5279 0.1410 16 8 1.1956 -4.5509 -0.3138 17 6 2.5348 -3.5783 1.3686 18 1 2.7330 -2.6179 1.8445 19 6 2.4088 -4.8056 2.2766 20 6 3.6404 -4.6223 1.4027 21 6 3.9233 -5.5399 0.2025 22 6 5.4634 -5.6858 0.2080 23 8 5.8564 -5.4174 1.5724 24 6 5.0212 -4.3187 2.0052 25 1 -0.4850 0.8366 0.0743 26 1 -0.0268 -1.3100 -1.5870 27 1 -0.2832 -3.0677 -1.4732 28 1 1.7233 -3.4515 -2.8787 29 1 1.9797 -1.6938 -2.9925 30 1 0.0655 -2.5123 -6.0120 31 1 2.5252 -4.6524 3.3495 32 1 1.6945 -5.5758 1.9862 33 1 3.4460 -6.5100 0.3409 34 1 3.5835 -5.0756 -0.7233 35 1 5.7494 -6.6984 -0.0768 36 1 5.9156 -4.9591 -0.4669 37 1 5.4051 -3.3743 1.6195 38 1 4.9635 -4.2907 3.0933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:42 Heat of formation + Delta-G solvation = -143.939277 kcal Electronic energy + Delta-G solvation = -23070.957857 eV Core-core repulsion = 19493.497216 eV Total energy + Delta-G solvation = -3577.460642 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99711 -39.73895 -38.24356 -35.95953 -35.53804 -34.59798 -32.00719 -30.70047 -29.99589 -27.14949 -25.33784 -24.74842 -22.48221 -22.31589 -20.41870 -19.57360 -18.83115 -17.78220 -16.75979 -16.39765 -15.92895 -15.81497 -15.63541 -15.43735 -14.90605 -14.56269 -14.18159 -13.77343 -13.44734 -12.96241 -12.74594 -12.57005 -12.28648 -12.13432 -11.85738 -11.66194 -11.29364 -11.18984 -11.15217 -11.05500 -10.75227 -10.73512 -10.45684 -10.18033 -10.10819 -9.84822 -9.58107 -9.43895 -9.17337 -8.56238 -7.66390 -6.48912 -4.18314 2.63850 3.02012 3.14697 3.16266 3.32715 3.49450 3.99423 4.15971 4.42380 4.46041 4.83849 4.99684 5.16533 5.23252 5.33429 5.44910 5.58221 5.71592 5.76296 5.80590 5.88978 5.95290 6.02408 6.05915 6.15391 6.27471 6.29473 6.30898 6.51517 6.64933 6.78882 6.84066 6.95356 7.23216 7.39441 7.77207 8.23761 8.28281 8.95848 9.37854 9.80306 10.52708 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.006555 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.711142 B = 4270.812505 C = 5513.655577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.349 4.349 8 H 0.093 0.907 9 N -0.433 5.433 10 C 0.126 3.874 11 C -0.124 4.124 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.499 3.501 16 O -0.601 6.601 17 C -0.137 4.137 18 H 0.128 0.872 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.110 4.110 22 C 0.046 3.954 23 O -0.380 6.380 24 C 0.083 3.917 25 H 0.274 0.726 26 H 0.117 0.883 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.401 0.599 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.843 -3.739 -1.915 8.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.161 4.161 3 Si 0.740 3.260 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.477 4.477 8 H 0.111 0.889 9 N -0.150 5.150 10 C 0.002 3.998 11 C -0.162 4.162 12 C 0.325 3.675 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.289 3.711 16 O -0.487 6.487 17 C -0.158 4.158 18 H 0.145 0.855 19 C -0.175 4.175 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.031 4.031 23 O -0.299 6.299 24 C 0.006 3.994 25 H 0.084 0.916 26 H 0.134 0.866 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.259 0.741 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.561 -4.140 -1.707 7.943 hybrid contribution -0.283 1.235 -0.608 1.405 sum 6.278 -2.904 -2.314 7.294 Atomic orbital electron populations 1.69854 1.06336 1.28364 1.44082 1.25436 0.95082 1.00034 0.95590 0.86140 0.79729 0.81410 0.78698 1.20124 1.20842 1.19204 1.19414 0.97540 0.84865 1.45851 0.88919 1.43317 1.39674 1.06050 1.25930 1.21208 0.91140 1.05721 0.81775 1.21846 0.98298 1.05027 0.91075 1.23799 0.88969 0.71392 0.83350 1.90704 1.19093 1.44934 1.85452 1.84592 1.46303 1.85097 1.17636 1.19457 0.83455 0.83989 0.84227 1.90527 1.56837 1.34411 1.66928 1.22173 0.99258 0.95308 0.99017 0.85465 1.22877 0.98597 0.99896 0.96116 1.22041 0.91042 1.01719 0.99792 1.22270 0.94881 0.99698 0.97880 1.23465 0.94396 1.01066 0.84148 1.89096 1.60212 1.52548 1.28002 1.22806 0.87075 0.90002 0.99479 0.91596 0.86561 0.91693 0.88505 0.87771 0.74126 0.88626 0.87968 0.90583 0.89886 0.89462 0.92414 0.91608 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.82 11.41 55.50 0.63 -21.19 16 2 C 0.05 1.11 4.95 -17.47 -0.09 1.02 16 3 Si 0.91 18.49 29.61 -169.99 -5.03 13.45 16 4 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.35 -8.24 8.24 -14.93 -0.12 -8.37 16 8 H 0.09 2.08 7.09 -52.49 -0.37 1.71 16 9 N -0.43 -10.26 2.53 -114.82 -0.29 -10.55 16 10 C 0.13 2.93 4.26 -4.05 -0.02 2.92 16 11 C -0.12 -2.39 6.13 -27.88 -0.17 -2.56 16 12 C 0.48 8.79 8.33 36.01 0.30 9.09 16 13 O -0.51 -10.91 16.74 -18.75 -0.31 -11.22 16 14 O -0.52 -7.42 13.42 -39.25 -0.53 -7.95 16 15 C 0.50 11.43 6.65 -10.99 -0.07 11.36 16 16 O -0.60 -14.75 14.87 5.55 0.08 -14.67 16 17 C -0.14 -2.62 5.34 -92.13 -0.49 -3.12 16 18 H 0.13 2.44 6.73 -51.93 -0.35 2.09 16 19 C -0.14 -2.29 9.81 -27.09 -0.27 -2.56 16 20 C -0.14 -2.39 2.48 -154.69 -0.38 -2.77 16 21 C -0.11 -1.76 5.99 -25.47 -0.15 -1.92 16 22 C 0.05 0.63 7.65 38.05 0.29 0.92 16 23 O -0.38 -5.84 11.65 -35.23 -0.41 -6.25 16 24 C 0.08 1.20 7.44 37.51 0.28 1.48 16 25 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 26 H 0.12 2.97 5.40 -51.93 -0.28 2.69 16 27 H 0.06 1.63 7.45 -51.93 -0.39 1.24 16 28 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 29 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 30 H 0.40 3.73 9.10 45.56 0.41 4.15 16 31 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.10 1.82 7.84 -51.93 -0.41 1.42 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.15 8.12 -51.93 -0.42 0.73 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -29.78 322.88 -6.15 -35.93 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.26 Total: 12.08 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -0.89 Total: 5.50 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.34 Total: -31.74 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.17 Total: -40.09 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.78 -6.15 -35.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.013 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds