Wall clock time and date at job start Tue Mar 31 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00485 * 2 1 4 4 H 1.48502 * 109.47378 * 65.47885 * 3 2 1 5 5 H 1.48499 * 109.47478 * 185.48382 * 3 2 1 6 6 H 1.48503 * 109.46899 * 305.48472 * 3 2 1 7 7 C 1.38946 * 119.99601 * 179.71682 * 2 1 3 8 8 H 1.08002 * 119.99882 * 27.06018 * 7 2 1 9 9 N 1.37104 * 120.00223 * 207.05669 * 7 2 1 10 10 C 1.46496 * 119.99959 * 37.34114 * 9 7 2 11 11 C 1.52998 * 109.46779 * 90.00518 * 10 9 7 12 12 C 1.50703 * 109.47204 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99837 * 0.02562 * 12 11 10 14 14 O 1.34230 * 119.99867 * 179.97438 * 12 11 10 15 15 C 1.34785 * 119.99952 * 217.34578 * 9 7 2 16 16 O 1.21287 * 119.99622 * 174.93185 * 15 9 7 17 17 C 1.50696 * 119.99685 * 354.93197 * 15 9 7 18 18 H 1.09001 * 115.56985 * 32.14475 * 17 15 9 19 19 C 1.53176 * 117.51926 * 246.28060 * 17 15 9 20 20 C 1.52140 * 117.51568 * 177.91103 * 17 15 9 21 21 C 1.54036 * 121.46892 * 356.55877 * 20 17 15 22 22 C 1.55180 * 101.83116 * 195.73573 * 21 20 17 23 23 O 1.44464 * 103.63395 * 36.32114 * 22 21 20 24 24 C 1.43984 * 107.04451 * 320.42944 * 23 22 21 25 25 H 0.96990 * 120.00602 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47007 * 210.00144 * 10 9 7 27 27 H 1.08998 * 109.47319 * 330.00632 * 10 9 7 28 28 H 1.09004 * 109.47046 * 299.99602 * 11 10 9 29 29 H 1.09003 * 109.47555 * 59.99984 * 11 10 9 30 30 H 0.96702 * 116.99202 * 180.02562 * 14 12 11 31 31 H 1.08995 * 117.52454 * 0.02562 * 19 17 15 32 32 H 1.09003 * 117.51822 * 145.15734 * 19 17 15 33 33 H 1.08999 * 110.95178 * 313.87021 * 21 20 17 34 34 H 1.09000 * 110.95595 * 77.60320 * 21 20 17 35 35 H 1.09000 * 110.59247 * 277.78607 * 22 21 20 36 36 H 1.09000 * 110.72125 * 154.92136 * 22 21 20 37 37 H 1.09001 * 109.97448 * 266.94272 * 24 23 22 38 38 H 1.09012 * 110.00364 * 145.69106 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 1.9926 2.3370 1.2738 5 1 3.7027 1.3495 -0.1338 6 1 1.7919 2.4527 -1.1401 7 6 2.0088 -1.2033 0.0059 8 1 1.5573 -2.0895 -0.4152 9 7 3.2673 -1.2658 0.5463 10 6 3.5888 -0.4886 1.7458 11 6 3.2904 -1.3258 2.9911 12 6 3.6216 -0.5266 4.2250 13 8 4.0518 0.5975 4.1193 14 8 3.4379 -1.0633 5.4416 15 6 4.2087 -2.0422 -0.0260 16 8 5.3457 -2.0273 0.3960 17 6 3.8485 -2.9287 -1.1902 18 1 3.0676 -2.5472 -1.8481 19 6 3.9151 -4.4436 -0.9734 20 6 4.9651 -3.7447 -1.8242 21 6 6.4252 -3.6133 -1.3514 22 6 7.1990 -4.2822 -2.5184 23 8 6.4493 -3.8941 -3.6907 24 6 5.0543 -3.9581 -3.3399 25 1 -0.4850 -0.8399 0.0004 26 1 4.6453 -0.2206 1.7327 27 1 2.9841 0.4181 1.7641 28 1 2.2338 -1.5938 3.0042 29 1 3.8950 -2.2326 2.9728 30 1 3.6642 -0.5120 6.2032 31 1 4.2190 -4.7986 0.0113 32 1 3.1775 -5.0590 -1.4886 33 1 6.7079 -2.5659 -1.2459 34 1 6.5830 -4.1541 -0.4183 35 1 7.2003 -5.3664 -2.4058 36 1 8.2192 -3.9023 -2.5726 37 1 4.6487 -4.9351 -3.6029 38 1 4.5028 -3.1743 -3.8593 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185327.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:45 Heat of formation + Delta-G solvation = -140.912876 kcal Electronic energy + Delta-G solvation = -23033.457537 eV Core-core repulsion = 19456.128130 eV Total energy + Delta-G solvation = -3577.329407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16689 -39.87554 -38.42206 -36.11936 -35.67786 -34.79050 -32.38205 -30.91587 -29.93401 -27.30526 -25.22872 -24.61408 -22.73252 -22.27665 -20.83957 -19.59438 -18.89360 -17.97116 -17.23952 -16.56043 -16.28965 -15.86549 -15.70176 -15.47069 -14.99244 -14.56562 -14.44354 -13.70508 -13.53966 -13.11104 -12.94643 -12.80683 -12.48656 -12.33159 -12.13149 -11.84440 -11.64767 -11.35138 -11.19001 -11.14854 -10.66175 -10.42544 -10.35326 -10.06314 -9.95889 -9.79059 -9.57226 -9.37454 -9.22160 -8.62454 -8.02371 -6.93784 -4.21692 2.46226 3.12340 3.19917 3.29220 3.44374 3.47662 4.06476 4.13393 4.18156 4.25420 4.73424 4.95509 5.03865 5.20182 5.25348 5.33427 5.38721 5.45537 5.66423 5.73427 5.79603 5.82300 5.89210 5.95407 5.99413 6.04232 6.11966 6.26194 6.33799 6.47740 6.52257 6.63331 6.68967 7.01302 7.47873 7.78332 8.10321 8.23111 8.88596 9.13251 9.61311 10.42078 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.005975 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.435504 B = 4685.193574 C = 5675.520174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.034 3.966 3 Si 1.034 2.966 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.284 1.284 7 C -0.436 4.436 8 H 0.092 0.908 9 N -0.453 5.453 10 C 0.126 3.874 11 C -0.123 4.123 12 C 0.484 3.516 13 O -0.518 6.518 14 O -0.521 6.521 15 C 0.505 3.495 16 O -0.592 6.592 17 C -0.132 4.132 18 H 0.128 0.872 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.099 4.099 22 C 0.043 3.957 23 O -0.381 6.381 24 C 0.087 3.913 25 H 0.278 0.722 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.404 0.596 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 -7.173 1.772 9.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.177 4.177 3 Si 0.861 3.139 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.109 0.891 9 N -0.173 5.173 10 C 0.002 3.998 11 C -0.162 4.162 12 C 0.327 3.673 13 O -0.406 6.406 14 O -0.332 6.332 15 C 0.295 3.705 16 O -0.478 6.478 17 C -0.153 4.153 18 H 0.145 0.855 19 C -0.178 4.178 20 C -0.147 4.147 21 C -0.136 4.136 22 C -0.034 4.034 23 O -0.300 6.300 24 C 0.010 3.990 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.262 0.738 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.486 -5.387 1.399 8.547 hybrid contribution -0.220 -1.326 0.787 1.558 sum 6.266 -6.713 2.186 9.440 Atomic orbital electron populations 1.70819 1.06756 1.31240 1.40093 1.26290 0.95985 1.01841 0.93597 0.84111 0.76404 0.75652 0.77720 1.20499 1.19876 1.21060 1.20365 0.91624 0.98286 1.45937 0.89080 1.43609 1.11223 1.41029 1.21403 1.21241 1.01726 0.93442 0.83369 1.21771 1.05513 0.99987 0.88882 1.23685 0.73276 0.85749 0.84622 1.90703 1.42233 1.20335 1.87306 1.84577 1.80739 1.50909 1.16992 1.19507 0.84101 0.83344 0.83573 1.90526 1.20224 1.70710 1.66310 1.22029 1.00597 0.92602 1.00055 0.85458 1.22853 1.00405 0.93648 1.00873 1.22123 0.92973 1.05243 0.94410 1.22491 0.90893 1.03065 0.97176 1.23676 0.96229 0.98414 0.85045 1.88874 1.16934 1.89529 1.34696 1.22495 0.83393 1.01039 0.92095 0.91101 0.89985 0.91133 0.86919 0.87829 0.73805 0.88600 0.88374 0.88802 0.90417 0.92741 0.89384 0.92207 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.87 13.69 55.50 0.76 -22.11 16 2 C 0.03 0.87 5.22 -17.47 -0.09 0.78 16 3 Si 1.03 24.11 25.53 -169.99 -4.34 19.77 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.27 -6.38 6.79 56.52 0.38 -5.99 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.44 -10.57 8.65 -14.93 -0.13 -10.70 16 8 H 0.09 2.26 7.21 -52.49 -0.38 1.88 16 9 N -0.45 -10.35 2.16 -114.81 -0.25 -10.60 16 10 C 0.13 2.74 3.41 -4.04 -0.01 2.72 16 11 C -0.12 -2.23 6.13 -27.88 -0.17 -2.40 16 12 C 0.48 8.24 8.33 36.01 0.30 8.54 16 13 O -0.52 -10.25 16.74 -18.75 -0.31 -10.56 16 14 O -0.52 -6.87 13.42 -39.26 -0.53 -7.40 16 15 C 0.50 11.07 7.40 -10.98 -0.08 10.99 16 16 O -0.59 -13.63 13.37 5.55 0.07 -13.56 16 17 C -0.13 -2.46 5.04 -92.12 -0.46 -2.93 16 18 H 0.13 2.43 7.16 -51.93 -0.37 2.06 16 19 C -0.14 -2.15 10.00 -27.08 -0.27 -2.42 16 20 C -0.15 -2.36 2.44 -154.67 -0.38 -2.74 16 21 C -0.10 -1.59 5.14 -25.04 -0.13 -1.72 16 22 C 0.04 0.58 7.73 38.31 0.30 0.88 16 23 O -0.38 -6.02 11.53 -35.23 -0.41 -6.43 16 24 C 0.09 1.26 7.50 37.33 0.28 1.54 16 25 H 0.28 7.21 8.73 -40.82 -0.36 6.86 16 26 H 0.08 1.84 7.32 -51.93 -0.38 1.46 16 27 H 0.07 1.62 3.86 -51.93 -0.20 1.42 16 28 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 29 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 30 H 0.40 3.37 9.10 45.56 0.41 3.79 16 31 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.75 6.95 -51.93 -0.36 1.39 16 34 H 0.08 1.23 8.12 -51.93 -0.42 0.80 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -29.81 318.03 -5.31 -35.12 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.25 Total: 8.40 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.85 Total: 2.56 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.51 Total: -32.70 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.17 Total: -37.94 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.34 Total: 19.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.81 -5.31 -35.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185327.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.793 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds