Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86810 * 120.00061 * 2 1 4 4 H 1.48494 * 109.46992 * 85.03668 * 3 2 1 5 5 H 1.48500 * 109.46863 * 205.03956 * 3 2 1 6 6 H 1.48502 * 109.46971 * 325.03678 * 3 2 1 7 7 C 1.38943 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00045 * 20.87822 * 7 2 1 9 9 N 1.37101 * 120.00273 * 200.87819 * 7 2 1 10 10 C 1.46498 * 119.99728 * 42.67572 * 9 7 2 11 11 C 1.53000 * 109.47532 * 89.99887 * 10 9 7 12 12 C 1.50698 * 109.47376 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99608 * 0.02562 * 12 11 10 14 14 O 1.34229 * 119.99881 * 179.97438 * 12 11 10 15 15 C 1.34774 * 119.99971 * 222.67429 * 9 7 2 16 16 O 1.21301 * 119.99872 * 176.81276 * 15 9 7 17 17 C 1.50698 * 120.00165 * 356.80771 * 15 9 7 18 18 H 1.09001 * 115.56596 * 12.10247 * 17 15 9 19 19 C 1.53185 * 117.52005 * 157.86643 * 17 15 9 20 20 C 1.52130 * 117.52362 * 226.32149 * 17 15 9 21 21 C 1.54029 * 121.47238 * 141.71616 * 20 17 15 22 22 C 1.55182 * 101.83217 * 195.70758 * 21 20 17 23 23 O 1.44457 * 103.63245 * 36.32890 * 22 21 20 24 24 C 1.43991 * 107.04554 * 320.43484 * 23 22 21 25 25 H 0.97009 * 119.99940 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46969 * 210.00451 * 10 9 7 27 27 H 1.09003 * 109.47241 * 329.99491 * 10 9 7 28 28 H 1.09001 * 109.46714 * 300.00232 * 11 10 9 29 29 H 1.09000 * 109.46740 * 59.99793 * 11 10 9 30 30 H 0.96703 * 116.99570 * 179.97438 * 14 12 11 31 31 H 1.08993 * 117.51952 * 214.84954 * 19 17 15 32 32 H 1.09001 * 117.51518 * 359.95688 * 19 17 15 33 33 H 1.09004 * 110.96170 * 313.84156 * 21 20 17 34 34 H 1.09006 * 110.96036 * 77.57589 * 21 20 17 35 35 H 1.08998 * 110.59344 * 277.79394 * 22 21 20 36 36 H 1.08998 * 110.72712 * 154.93039 * 22 21 20 37 37 H 1.09003 * 109.97192 * 266.93766 * 24 23 22 38 38 H 1.08998 * 109.96859 * 145.66897 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.3907 2.1070 1.3948 5 1 3.5942 1.4122 -0.5926 6 1 1.5020 2.6202 -0.8023 7 6 2.0088 -1.2033 0.0005 8 1 1.5220 -2.1081 -0.3324 9 7 3.3123 -1.2421 0.4237 10 6 3.7168 -0.4982 1.6192 11 6 3.5580 -1.3895 2.8526 12 6 3.9747 -0.6244 4.0823 13 8 4.3587 0.5168 3.9824 14 8 3.9182 -1.2105 5.2885 15 6 4.2215 -1.9647 -0.2601 16 8 5.3858 -1.9529 0.0801 17 6 3.7918 -2.7873 -1.4474 18 1 2.7850 -2.5910 -1.8161 19 6 4.8634 -3.1564 -2.4779 20 6 4.3067 -4.2161 -1.5361 21 6 3.4156 -5.3614 -2.0524 22 6 4.1987 -6.6135 -1.5758 23 8 4.7348 -6.2128 -0.2956 24 6 5.1579 -4.8426 -0.4253 25 1 -0.4850 0.8401 -0.0004 26 1 4.7589 -0.1939 1.5224 27 1 3.0886 0.3861 1.7267 28 1 2.5158 -1.6937 2.9492 29 1 4.1862 -2.2738 2.7451 30 1 4.1961 -0.6800 6.0478 31 1 4.5610 -3.2037 -3.5240 32 1 5.8787 -2.8035 -2.2971 33 1 2.4269 -5.3226 -1.5952 34 1 3.3419 -5.3383 -3.1397 35 1 5.0039 -6.8499 -2.2714 36 1 3.5298 -7.4664 -1.4613 37 1 6.2127 -4.8028 -0.6972 38 1 4.9947 -4.3122 0.5129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = -138.912122 kcal Electronic energy + Delta-G solvation = -23144.656648 eV Core-core repulsion = 19567.414000 eV Total energy + Delta-G solvation = -3577.242648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.16946 -39.86120 -38.43791 -36.09776 -35.66055 -34.78919 -32.34276 -30.92815 -30.07552 -27.13312 -25.33204 -25.07120 -22.58786 -22.50145 -20.71619 -19.63981 -18.78512 -17.92118 -16.90074 -16.59151 -16.28248 -15.97888 -15.62771 -15.56193 -14.92989 -14.62700 -14.17273 -13.98045 -13.41132 -13.12175 -12.86621 -12.71371 -12.59395 -12.40151 -12.11539 -11.97295 -11.56015 -11.31552 -11.28664 -11.12554 -10.85567 -10.73979 -10.33264 -10.27985 -10.01574 -9.89391 -9.73703 -9.37390 -9.22726 -8.72131 -7.91287 -6.58461 -4.25555 2.49298 3.01545 3.14403 3.21849 3.29679 3.37835 4.05006 4.08705 4.20038 4.34395 4.66495 4.84918 5.04808 5.11559 5.24065 5.32540 5.39110 5.49534 5.67166 5.71774 5.77895 5.87607 5.94624 5.98900 6.03369 6.09165 6.10592 6.19038 6.30220 6.35014 6.50181 6.59384 6.71864 7.04919 7.24089 7.94897 8.10907 8.14560 8.83387 9.19526 9.52162 10.50747 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014120 B = 0.006667 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.467293 B = 4199.002164 C = 5357.226656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.074 3.926 3 Si 0.865 3.135 4 H -0.269 1.269 5 H -0.259 1.259 6 H -0.285 1.285 7 C -0.353 4.353 8 H 0.106 0.894 9 N -0.459 5.459 10 C 0.115 3.885 11 C -0.123 4.123 12 C 0.485 3.515 13 O -0.520 6.520 14 O -0.519 6.519 15 C 0.513 3.487 16 O -0.592 6.592 17 C -0.139 4.139 18 H 0.135 0.865 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.119 4.119 22 C 0.050 3.950 23 O -0.382 6.382 24 C 0.090 3.910 25 H 0.277 0.723 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.403 0.597 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 -7.133 -0.351 8.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.134 4.134 3 Si 0.692 3.308 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.211 1.211 7 C -0.479 4.479 8 H 0.124 0.876 9 N -0.179 5.179 10 C -0.009 4.009 11 C -0.161 4.161 12 C 0.327 3.673 13 O -0.408 6.408 14 O -0.331 6.331 15 C 0.303 3.697 16 O -0.477 6.477 17 C -0.159 4.159 18 H 0.153 0.847 19 C -0.177 4.177 20 C -0.144 4.144 21 C -0.157 4.157 22 C -0.027 4.027 23 O -0.301 6.301 24 C 0.014 3.986 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.261 0.739 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.148 -7.052 -0.354 8.739 hybrid contribution 0.203 1.577 0.329 1.624 sum 5.351 -5.475 -0.024 7.656 Atomic orbital electron populations 1.69752 1.06281 1.28425 1.44351 1.25370 0.95032 0.98551 0.94489 0.87059 0.81325 0.83598 0.78854 1.19505 1.18312 1.21108 1.19007 0.85253 0.96460 1.47206 0.87646 1.43568 1.09200 1.44263 1.20874 1.21396 1.01655 0.94031 0.83805 1.21755 1.05265 1.00225 0.88884 1.23708 0.73381 0.85643 0.84547 1.90700 1.43852 1.19408 1.86877 1.84585 1.80727 1.49938 1.17843 1.19553 0.84511 0.82309 0.83300 1.90554 1.18251 1.68406 1.70508 1.22210 1.00976 0.94608 0.98153 0.84735 1.22957 0.99180 1.00503 0.95022 1.22077 1.01260 0.90342 1.00683 1.22621 0.99115 0.92759 1.01181 1.23503 0.96435 0.97083 0.85686 1.88903 1.81839 1.27643 1.31739 1.22481 0.96615 0.81013 0.98493 0.91306 0.90209 0.90496 0.86611 0.87690 0.73862 0.88321 0.87851 0.89732 0.90164 0.92463 0.89271 0.92002 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.61 13.96 55.50 0.77 -21.83 16 2 C 0.07 1.89 5.30 -17.47 -0.09 1.80 16 3 Si 0.87 20.36 25.22 -169.99 -4.29 16.08 16 4 H -0.27 -6.35 6.71 56.52 0.38 -5.97 16 5 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.35 -8.63 8.64 -14.93 -0.13 -8.76 16 8 H 0.11 2.68 7.18 -52.49 -0.38 2.30 16 9 N -0.46 -10.52 2.07 -114.81 -0.24 -10.76 16 10 C 0.11 2.51 3.53 -4.04 -0.01 2.50 16 11 C -0.12 -2.26 6.13 -27.88 -0.17 -2.44 16 12 C 0.48 8.42 8.33 36.00 0.30 8.72 16 13 O -0.52 -10.50 16.74 -18.75 -0.31 -10.82 16 14 O -0.52 -7.04 13.42 -39.25 -0.53 -7.57 16 15 C 0.51 11.26 6.67 -10.99 -0.07 11.19 16 16 O -0.59 -13.73 14.71 5.54 0.08 -13.65 16 17 C -0.14 -2.58 5.43 -92.12 -0.50 -3.08 16 18 H 0.13 2.57 6.56 -51.93 -0.34 2.23 16 19 C -0.14 -2.15 9.82 -26.99 -0.27 -2.42 16 20 C -0.14 -2.26 2.42 -154.60 -0.37 -2.64 16 21 C -0.12 -1.56 6.94 -25.04 -0.17 -1.73 16 22 C 0.05 0.62 7.73 38.31 0.30 0.91 16 23 O -0.38 -6.22 11.53 -35.23 -0.41 -6.62 16 24 C 0.09 1.52 6.71 37.33 0.25 1.77 16 25 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.08 1.80 7.34 -51.93 -0.38 1.42 16 27 H 0.08 1.79 3.80 -51.93 -0.20 1.59 16 28 H 0.12 2.11 8.14 -51.93 -0.42 1.68 16 29 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 30 H 0.40 3.51 9.10 45.56 0.41 3.92 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.10 1.68 7.85 -51.93 -0.41 1.27 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.71 6.81 -51.93 -0.35 1.36 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -30.26 318.29 -5.25 -35.51 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.18 Total: 9.06 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.95 Total: 5.81 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.54 Total: -32.59 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.17 Total: -38.66 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.29 Total: 16.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.26 -5.25 -35.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.403 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds