Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86799 * 120.00153 * 2 1 4 4 H 1.48496 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46806 * 300.00206 * 3 2 1 6 6 H 1.48503 * 109.47080 * 59.99606 * 3 2 1 7 7 C 1.39074 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00235 * 166.88701 * 7 2 1 9 9 N 1.36822 * 120.00151 * 346.88238 * 7 2 1 10 10 C 1.46498 * 119.99791 * 323.16832 * 9 7 2 11 11 C 1.53006 * 109.47009 * 272.76026 * 10 9 7 12 12 C 1.50696 * 109.47148 * 180.02562 * 11 10 9 13 13 O 1.20824 * 120.00556 * 0.02562 * 12 11 10 14 14 O 1.34231 * 119.99750 * 180.02562 * 12 11 10 15 15 C 1.34779 * 120.00095 * 143.16020 * 9 7 2 16 16 O 1.21652 * 119.99912 * 180.02562 * 15 9 7 17 17 C 1.46951 * 119.99465 * 0.28126 * 15 9 7 18 18 C 1.33126 * 119.99612 * 185.61792 * 17 15 9 19 19 C 1.50706 * 120.00190 * 16.47550 * 18 17 15 20 20 H 1.09003 * 110.74862 * 13.03704 * 19 18 17 21 21 C 1.55303 * 110.84648 * 136.50504 * 19 18 17 22 22 C 1.55208 * 100.82566 * 152.18182 * 21 19 18 23 23 O 1.43650 * 105.25719 * 323.81977 * 22 21 19 24 24 C 1.43237 * 109.97499 * 24.28377 * 23 22 21 25 25 H 0.97004 * 119.99851 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47926 * 32.76161 * 10 9 7 27 27 H 1.09003 * 109.47455 * 152.76405 * 10 9 7 28 28 H 1.09002 * 109.46694 * 300.00258 * 11 10 9 29 29 H 1.09003 * 109.46703 * 59.99919 * 11 10 9 30 30 H 0.96708 * 117.00038 * 180.02562 * 14 12 11 31 31 H 1.07993 * 120.00512 * 5.61351 * 17 15 9 32 32 H 1.08002 * 119.99995 * 196.48216 * 18 17 15 33 33 H 1.09004 * 111.12591 * 270.24422 * 21 19 18 34 34 H 1.09000 * 111.12374 * 34.40984 * 21 19 18 35 35 H 1.08993 * 110.37096 * 204.80236 * 22 21 19 36 36 H 1.09002 * 110.12891 * 82.70845 * 22 21 19 37 37 H 1.09000 * 109.82752 * 238.77802 * 24 23 22 38 38 H 1.08997 * 109.90434 * 117.83979 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7075 1.3464 0.0006 5 1 1.8887 2.3964 -1.2125 6 1 1.8887 2.3965 1.2125 7 6 2.0089 -1.2044 -0.0005 8 1 3.0677 -1.2166 -0.2127 9 7 1.3516 -2.3740 0.2679 10 6 0.2812 -2.3998 1.2678 11 6 0.8828 -2.6481 2.6525 12 6 -0.2183 -2.6753 3.6810 13 8 -1.3664 -2.5133 3.3414 14 8 0.0765 -2.8795 4.9745 15 6 1.6887 -3.5023 -0.3878 16 8 1.1040 -4.5421 -0.1495 17 6 2.7665 -3.4775 -1.3864 18 6 3.0251 -4.5622 -2.1137 19 6 2.0113 -5.6744 -2.1947 20 1 1.0477 -5.3479 -1.8035 21 6 1.8701 -6.1883 -3.6534 22 6 1.4340 -7.6568 -3.4042 23 8 2.1557 -8.0720 -2.2337 24 6 2.5113 -6.9291 -1.4470 25 1 -0.4850 0.8401 0.0004 26 1 -0.2419 -1.4436 1.2650 27 1 -0.4207 -3.1986 1.0281 28 1 1.4059 -3.6044 2.6552 29 1 1.5847 -1.8493 2.8921 30 1 -0.6633 -2.8890 5.5973 31 1 3.3487 -2.5794 -1.5305 32 1 3.9614 -4.6452 -2.6455 33 1 1.1026 -5.6333 -4.1929 34 1 2.8244 -6.1470 -4.1786 35 1 1.7024 -8.2820 -4.2557 36 1 0.3601 -7.7036 -3.2230 37 1 3.5940 -6.8830 -1.3302 38 1 2.0360 -6.9900 -0.4680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -147.272273 kcal Electronic energy + Delta-G solvation = -22649.050938 eV Core-core repulsion = 19071.445767 eV Total energy + Delta-G solvation = -3577.605171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.83977 -39.33784 -38.41924 -35.85372 -35.28150 -33.56964 -31.95521 -31.04885 -30.17193 -28.36477 -25.36190 -24.46506 -22.42973 -21.76740 -20.72526 -19.90069 -18.97493 -17.74062 -16.74496 -16.53106 -16.14941 -15.83755 -15.52325 -15.32750 -14.63217 -14.43660 -14.05697 -13.73241 -13.33325 -12.87814 -12.77002 -12.64099 -12.55932 -12.21082 -11.86219 -11.36093 -11.31242 -11.25108 -11.14634 -11.10516 -10.98051 -10.64507 -10.43489 -10.31462 -10.13049 -10.02951 -9.32180 -9.24436 -8.63415 -8.29799 -7.65423 -6.42669 -4.23927 2.06434 2.67887 3.04267 3.13534 3.16399 3.44078 3.97364 4.16743 4.28271 4.76050 4.90229 4.97271 5.10680 5.34667 5.47515 5.60125 5.61434 5.71569 5.81623 5.89720 5.97668 6.04319 6.07087 6.08906 6.25639 6.35662 6.38849 6.75854 6.79397 6.86008 6.95790 7.17223 7.22680 7.34059 7.51502 7.79010 8.24411 8.31699 8.93738 9.35451 9.78108 10.52541 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.005567 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.928097 B = 5028.224688 C = 6584.482890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.341 4.341 8 H 0.095 0.905 9 N -0.426 5.426 10 C 0.110 3.890 11 C -0.121 4.121 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.491 3.509 16 O -0.597 6.597 17 C -0.157 4.157 18 C -0.111 4.111 19 C -0.103 4.103 20 H 0.130 0.870 21 C -0.152 4.152 22 C 0.053 3.947 23 O -0.393 6.393 24 C 0.068 3.932 25 H 0.272 0.728 26 H 0.133 0.867 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.401 0.599 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 -4.698 -0.431 6.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.469 4.469 8 H 0.112 0.888 9 N -0.142 5.142 10 C -0.014 4.014 11 C -0.160 4.160 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.337 6.337 15 C 0.283 3.717 16 O -0.485 6.485 17 C -0.177 4.177 18 C -0.132 4.132 19 C -0.121 4.121 20 H 0.148 0.852 21 C -0.190 4.190 22 C -0.023 4.023 23 O -0.313 6.313 24 C -0.008 4.008 25 H 0.083 0.917 26 H 0.150 0.850 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.258 0.742 31 H 0.147 0.853 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.941 -5.161 -0.612 6.523 hybrid contribution -0.009 1.339 0.386 1.393 sum 3.932 -3.823 -0.226 5.488 Atomic orbital electron populations 1.69667 1.06187 1.27863 1.45703 1.25487 0.95290 1.00033 0.95741 0.85977 0.79782 0.81483 0.78152 1.19076 1.20515 1.20439 1.19533 0.93584 0.83519 1.50297 0.88774 1.43344 1.31910 1.07413 1.31567 1.21515 0.90298 1.06702 0.82920 1.21814 0.95941 1.04786 0.93480 1.23791 0.90625 0.71333 0.81741 1.90700 1.23034 1.45363 1.81011 1.84594 1.44687 1.84746 1.19664 1.18621 0.85360 0.84423 0.83311 1.90532 1.57438 1.31745 1.68799 1.22915 0.99555 0.98169 0.97087 1.23188 0.97154 0.94430 0.98408 1.22280 1.02307 0.93991 0.93485 0.85229 1.23406 1.02063 0.95810 0.97712 1.23346 0.96237 0.94663 0.88080 1.88324 1.75446 1.31635 1.35913 1.23058 0.99071 0.83539 0.95103 0.91666 0.85007 0.91603 0.88794 0.87808 0.74167 0.85282 0.86946 0.90160 0.90957 0.90401 0.92435 0.92226 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.90 10.88 55.50 0.60 -21.29 16 2 C 0.04 0.97 5.18 -17.45 -0.09 0.88 16 3 Si 0.92 18.40 29.57 -169.99 -5.03 13.37 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.34 -8.04 8.56 -15.02 -0.13 -8.16 16 8 H 0.09 2.08 6.62 -52.49 -0.35 1.74 16 9 N -0.43 -10.10 2.53 -116.20 -0.29 -10.39 16 10 C 0.11 2.56 4.34 -4.04 -0.02 2.55 16 11 C -0.12 -2.36 6.13 -27.88 -0.17 -2.54 16 12 C 0.48 8.88 8.33 36.00 0.30 9.18 16 13 O -0.51 -10.99 16.74 -18.75 -0.31 -11.30 16 14 O -0.53 -7.54 13.42 -39.26 -0.53 -8.07 16 15 C 0.49 11.18 7.38 -12.73 -0.09 11.08 16 16 O -0.60 -14.29 12.55 5.23 0.07 -14.22 16 17 C -0.16 -3.00 9.27 -37.83 -0.35 -3.35 16 18 C -0.11 -1.83 8.75 -36.08 -0.32 -2.15 16 19 C -0.10 -1.74 2.33 -89.83 -0.21 -1.94 16 20 H 0.13 2.65 5.33 -51.93 -0.28 2.37 16 21 C -0.15 -2.09 6.63 -24.34 -0.16 -2.25 16 22 C 0.05 0.73 7.78 38.33 0.30 1.02 16 23 O -0.39 -6.54 11.36 -35.23 -0.40 -6.94 16 24 C 0.07 1.15 7.27 37.88 0.28 1.42 16 25 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 26 H 0.13 3.39 5.05 -51.93 -0.26 3.13 16 27 H 0.07 1.65 7.29 -51.93 -0.38 1.27 16 28 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 29 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 30 H 0.40 3.82 9.10 45.56 0.41 4.23 16 31 H 0.13 2.34 6.46 -52.49 -0.34 2.00 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.92 7.81 -51.93 -0.41 0.52 16 38 H 0.08 1.38 7.88 -51.93 -0.41 0.98 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -29.33 320.99 -5.81 -35.15 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -4.09 Total: 13.12 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.66 Total: 5.74 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.31 Total: -31.68 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.18 Total: -40.53 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.33 -5.81 -35.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.125 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds