Wall clock time and date at job start Tue Mar 31 2020 05:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86802 * 119.99556 * 2 1 4 4 H 1.48496 * 109.47276 * 269.99936 * 3 2 1 5 5 H 1.48496 * 109.47511 * 30.00389 * 3 2 1 6 6 H 1.48505 * 109.46763 * 150.00381 * 3 2 1 7 7 C 1.39068 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99696 * 159.25777 * 7 2 1 9 9 N 1.36814 * 119.99936 * 339.25729 * 7 2 1 10 10 C 1.46498 * 120.00343 * 324.85332 * 9 7 2 11 11 C 1.53005 * 109.47073 * 264.89558 * 10 9 7 12 12 C 1.50692 * 109.46989 * 179.97438 * 11 10 9 13 13 O 1.20831 * 120.00282 * 0.02562 * 12 11 10 14 14 O 1.34232 * 120.00294 * 180.02562 * 12 11 10 15 15 C 1.34784 * 120.00014 * 144.85588 * 9 7 2 16 16 O 1.21655 * 119.99994 * 179.72604 * 15 9 7 17 17 C 1.46958 * 119.99633 * 359.97438 * 15 9 7 18 18 C 1.33118 * 119.99370 * 180.02562 * 17 15 9 19 19 C 1.50706 * 119.99770 * 180.02562 * 18 17 15 20 20 H 1.09007 * 110.45670 * 2.60560 * 19 18 17 21 21 C 1.54509 * 110.51024 * 240.00527 * 19 18 17 22 22 C 1.54482 * 104.06059 * 241.35103 * 21 19 18 23 23 O 1.44427 * 104.80075 * 23.97719 * 22 21 19 24 24 C 1.44422 * 105.28005 * 319.48691 * 23 22 21 25 25 H 0.97007 * 120.00558 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46890 * 24.89259 * 10 9 7 27 27 H 1.08996 * 109.47314 * 144.89657 * 10 9 7 28 28 H 1.08996 * 109.47012 * 300.00152 * 11 10 9 29 29 H 1.09005 * 109.46743 * 59.99764 * 11 10 9 30 30 H 0.96698 * 117.00244 * 179.97438 * 14 12 11 31 31 H 1.07997 * 119.99967 * 0.02562 * 17 15 9 32 32 H 1.07997 * 120.00663 * 0.02562 * 18 17 15 33 33 H 1.08995 * 110.51305 * 359.97438 * 21 19 18 34 34 H 1.09004 * 110.50926 * 122.71012 * 21 19 18 35 35 H 1.08995 * 110.37393 * 142.80783 * 22 21 19 36 36 H 1.09004 * 110.37237 * 265.15219 * 22 21 19 37 37 H 1.08995 * 110.37338 * 281.68257 * 24 23 22 38 38 H 1.08994 * 110.37484 * 159.34248 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0465 -1.4000 5 1 1.4449 2.6527 0.7001 6 1 3.5450 1.4402 0.7000 7 6 2.0088 -1.2044 -0.0005 8 1 3.0363 -1.2344 -0.3318 9 7 1.3913 -2.3510 0.4186 10 6 0.4154 -2.3005 1.5100 11 6 1.1115 -2.6290 2.8323 12 6 0.1078 -2.5765 3.9550 13 8 -1.0462 -2.3047 3.7216 14 8 0.4955 -2.8317 5.2145 15 6 1.6808 -3.5271 -0.1726 16 8 1.1354 -4.5475 0.2034 17 6 2.6594 -3.5777 -1.2678 18 6 2.9450 -4.7393 -1.8520 19 6 3.9490 -4.7913 -2.9747 20 1 4.3765 -3.8039 -3.1496 21 6 3.2917 -5.3326 -4.2640 22 6 4.0835 -6.6219 -4.5761 23 8 4.6298 -7.0361 -3.3049 24 6 5.0600 -5.8175 -2.6603 25 1 -0.4851 0.8401 0.0004 26 1 -0.0165 -1.3013 1.5653 27 1 -0.3748 -3.0281 1.3249 28 1 1.5435 -3.6282 2.7770 29 1 1.9017 -1.9014 3.0174 30 1 -0.1840 -2.7855 5.9010 31 1 3.1469 -2.6725 -1.5986 32 1 2.4572 -5.6444 -1.5215 33 1 2.2408 -5.5630 -4.0893 34 1 3.3965 -4.6139 -5.0769 35 1 3.4182 -7.3895 -4.9713 36 1 4.8857 -6.4127 -5.2837 37 1 6.0119 -5.4849 -3.0741 38 1 5.1448 -5.9670 -1.5840 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:06 Heat of formation + Delta-G solvation = -157.146844 kcal Electronic energy + Delta-G solvation = -22154.731600 eV Core-core repulsion = 18576.698235 eV Total energy + Delta-G solvation = -3578.033365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83666 -39.40820 -38.52028 -35.82681 -35.11139 -33.89553 -32.01903 -31.02178 -30.23646 -28.58902 -25.29208 -24.57710 -22.93659 -21.89012 -20.57121 -19.60962 -18.94732 -17.76811 -17.09810 -16.39346 -16.03762 -15.89826 -15.74736 -15.46067 -14.99404 -14.54735 -14.31974 -13.70580 -13.50339 -13.01561 -12.81217 -12.64534 -12.52413 -11.90478 -11.73931 -11.55484 -11.38245 -11.26621 -11.16788 -11.13201 -11.07951 -10.77723 -10.52399 -10.41847 -10.15588 -10.06268 -9.87836 -9.24622 -8.64044 -8.58714 -7.67105 -6.48293 -4.16351 2.16416 2.66701 3.05471 3.15160 3.17811 3.43426 3.99940 4.00759 4.32137 4.61813 4.75681 4.90727 4.98568 5.05507 5.19334 5.28065 5.55209 5.60123 5.67353 5.74887 5.75555 5.80357 5.94046 6.04135 6.05887 6.14633 6.32763 6.39711 6.79803 6.81241 6.84966 7.08261 7.20465 7.24975 7.40122 7.77122 8.24201 8.30943 8.95775 9.39556 9.82776 10.52706 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014326 B = 0.004727 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.017307 B = 5922.316915 C = 7322.387366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.043 3.957 3 Si 0.914 3.086 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.427 5.427 10 C 0.125 3.875 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.524 6.524 15 C 0.490 3.510 16 O -0.607 6.607 17 C -0.151 4.151 18 C -0.117 4.117 19 C -0.091 4.091 20 H 0.089 0.911 21 C -0.148 4.148 22 C 0.044 3.956 23 O -0.376 6.376 24 C 0.053 3.947 25 H 0.273 0.727 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.401 0.599 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 -4.023 -2.185 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.740 3.260 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.474 4.474 8 H 0.112 0.888 9 N -0.143 5.143 10 C 0.001 3.999 11 C -0.164 4.164 12 C 0.326 3.674 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.281 3.719 16 O -0.495 6.495 17 C -0.172 4.172 18 C -0.138 4.138 19 C -0.110 4.110 20 H 0.107 0.893 21 C -0.186 4.186 22 C -0.033 4.033 23 O -0.295 6.295 24 C -0.024 4.024 25 H 0.084 0.916 26 H 0.136 0.864 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.259 0.741 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.218 -4.485 -2.275 8.797 hybrid contribution -0.126 1.350 0.367 1.405 sum 7.093 -3.134 -1.909 7.986 Atomic orbital electron populations 1.69891 1.06336 1.28228 1.44028 1.25440 0.95097 1.00080 0.95813 0.86151 0.79777 0.81394 0.78723 1.20097 1.20597 1.19149 1.19431 0.96649 0.84893 1.46451 0.88786 1.43316 1.37192 1.06173 1.27612 1.21220 0.90772 1.05688 0.82246 1.21856 0.97667 1.05117 0.91782 1.23767 0.89146 0.71721 0.82807 1.90706 1.20945 1.44371 1.84128 1.84590 1.46779 1.83479 1.18764 1.18599 0.85200 0.84183 0.83878 1.90633 1.56712 1.34683 1.67446 1.22870 0.98701 0.98114 0.97493 1.23265 0.96766 0.98666 0.95065 1.21659 0.95216 1.00120 0.93970 0.89251 1.23017 1.01359 0.97191 0.97019 1.23425 0.96502 0.96546 0.86784 1.89121 1.80582 1.28882 1.30928 1.23485 0.95751 0.84082 0.99083 0.91644 0.86374 0.91715 0.88296 0.87818 0.74130 0.85745 0.86102 0.90044 0.90377 0.89272 0.92534 0.92178 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.11 11.32 55.50 0.63 -21.48 16 2 C 0.04 1.05 4.95 -17.45 -0.09 0.96 16 3 Si 0.91 18.53 29.60 -169.99 -5.03 13.50 16 4 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.35 -8.36 8.53 -15.02 -0.13 -8.48 16 8 H 0.09 2.12 6.66 -52.49 -0.35 1.77 16 9 N -0.43 -10.47 2.54 -116.21 -0.30 -10.77 16 10 C 0.12 3.00 4.18 -4.04 -0.02 2.98 16 11 C -0.13 -2.49 6.10 -27.88 -0.17 -2.66 16 12 C 0.48 8.97 8.33 36.00 0.30 9.27 16 13 O -0.51 -11.08 16.74 -18.75 -0.31 -11.39 16 14 O -0.52 -7.56 13.42 -39.26 -0.53 -8.09 16 15 C 0.49 11.84 7.55 -12.73 -0.10 11.74 16 16 O -0.61 -16.01 15.89 5.23 0.08 -15.92 16 17 C -0.15 -3.01 8.90 -37.83 -0.34 -3.35 16 18 C -0.12 -2.02 8.10 -36.09 -0.29 -2.32 16 19 C -0.09 -1.21 3.45 -90.20 -0.31 -1.52 16 20 H 0.09 1.09 7.87 -51.92 -0.41 0.68 16 21 C -0.15 -1.74 6.73 -25.16 -0.17 -1.91 16 22 C 0.04 0.48 7.63 37.94 0.29 0.77 16 23 O -0.38 -5.23 11.65 -35.23 -0.41 -5.64 16 24 C 0.05 0.65 7.17 37.93 0.27 0.93 16 25 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.12 3.06 5.33 -51.93 -0.28 2.78 16 27 H 0.06 1.68 7.54 -51.93 -0.39 1.29 16 28 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 29 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 30 H 0.40 3.82 9.10 45.56 0.41 4.23 16 31 H 0.12 2.34 6.32 -52.49 -0.33 2.01 16 32 H 0.12 2.31 7.49 -52.49 -0.39 1.92 16 33 H 0.08 1.05 7.73 -51.93 -0.40 0.65 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.20 7.86 -51.93 -0.41 0.79 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -31.32 327.15 -5.90 -37.22 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.22 Total: 11.24 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.75 Total: 6.41 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.33 Total: -32.25 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.17 Total: -41.05 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.32 -5.90 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.927 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds