Wall clock time and date at job start Tue Mar 31 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86802 * 119.99556 * 2 1 4 4 H 1.48496 * 109.47276 * 269.99936 * 3 2 1 5 5 H 1.48496 * 109.47511 * 30.00389 * 3 2 1 6 6 H 1.48505 * 109.46763 * 150.00381 * 3 2 1 7 7 C 1.39068 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99696 * 159.25777 * 7 2 1 9 9 N 1.36814 * 119.99936 * 339.25729 * 7 2 1 10 10 C 1.46498 * 120.00343 * 324.85332 * 9 7 2 11 11 C 1.53005 * 109.47073 * 264.89558 * 10 9 7 12 12 C 1.50692 * 109.46989 * 179.97438 * 11 10 9 13 13 O 1.20831 * 120.00282 * 0.02562 * 12 11 10 14 14 O 1.34232 * 120.00294 * 180.02562 * 12 11 10 15 15 C 1.34784 * 120.00014 * 144.85588 * 9 7 2 16 16 O 1.21655 * 119.99994 * 179.72604 * 15 9 7 17 17 C 1.46958 * 119.99633 * 359.97438 * 15 9 7 18 18 C 1.33118 * 119.99370 * 180.02562 * 17 15 9 19 19 C 1.50706 * 119.99770 * 180.02562 * 18 17 15 20 20 H 1.09007 * 110.45670 * 2.60560 * 19 18 17 21 21 C 1.54509 * 110.51024 * 240.00527 * 19 18 17 22 22 C 1.54482 * 104.06059 * 241.35103 * 21 19 18 23 23 O 1.44427 * 104.80075 * 23.97719 * 22 21 19 24 24 C 1.44422 * 105.28005 * 319.48691 * 23 22 21 25 25 H 0.97007 * 120.00558 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46890 * 24.89259 * 10 9 7 27 27 H 1.08996 * 109.47314 * 144.89657 * 10 9 7 28 28 H 1.08996 * 109.47012 * 300.00152 * 11 10 9 29 29 H 1.09005 * 109.46743 * 59.99764 * 11 10 9 30 30 H 0.96698 * 117.00244 * 179.97438 * 14 12 11 31 31 H 1.07997 * 119.99967 * 0.02562 * 17 15 9 32 32 H 1.07997 * 120.00663 * 0.02562 * 18 17 15 33 33 H 1.08995 * 110.51305 * 359.97438 * 21 19 18 34 34 H 1.09004 * 110.50926 * 122.71012 * 21 19 18 35 35 H 1.08995 * 110.37393 * 142.80783 * 22 21 19 36 36 H 1.09004 * 110.37237 * 265.15219 * 22 21 19 37 37 H 1.08995 * 110.37338 * 281.68257 * 24 23 22 38 38 H 1.08994 * 110.37484 * 159.34248 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0465 -1.4000 5 1 1.4449 2.6527 0.7001 6 1 3.5450 1.4402 0.7000 7 6 2.0088 -1.2044 -0.0005 8 1 3.0363 -1.2344 -0.3318 9 7 1.3913 -2.3510 0.4186 10 6 0.4154 -2.3005 1.5100 11 6 1.1115 -2.6290 2.8323 12 6 0.1078 -2.5765 3.9550 13 8 -1.0462 -2.3047 3.7216 14 8 0.4955 -2.8317 5.2145 15 6 1.6808 -3.5271 -0.1726 16 8 1.1354 -4.5475 0.2034 17 6 2.6594 -3.5777 -1.2678 18 6 2.9450 -4.7393 -1.8520 19 6 3.9490 -4.7913 -2.9747 20 1 4.3765 -3.8039 -3.1496 21 6 3.2917 -5.3326 -4.2640 22 6 4.0835 -6.6219 -4.5761 23 8 4.6298 -7.0361 -3.3049 24 6 5.0600 -5.8175 -2.6603 25 1 -0.4851 0.8401 0.0004 26 1 -0.0165 -1.3013 1.5653 27 1 -0.3748 -3.0281 1.3249 28 1 1.5435 -3.6282 2.7770 29 1 1.9017 -1.9014 3.0174 30 1 -0.1840 -2.7855 5.9010 31 1 3.1469 -2.6725 -1.5986 32 1 2.4572 -5.6444 -1.5215 33 1 2.2408 -5.5630 -4.0893 34 1 3.3965 -4.6139 -5.0769 35 1 3.4182 -7.3895 -4.9713 36 1 4.8857 -6.4127 -5.2837 37 1 6.0119 -5.4849 -3.0741 38 1 5.1448 -5.9670 -1.5840 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:05 Heat of formation + Delta-G solvation = -178.674534 kcal Electronic energy + Delta-G solvation = -22155.665111 eV Core-core repulsion = 18576.698235 eV Total energy + Delta-G solvation = -3578.966875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37103 -40.59969 -40.13369 -37.30099 -36.88102 -35.25712 -33.84597 -32.63729 -31.52112 -29.67813 -27.12963 -26.23769 -24.09404 -23.08841 -21.98704 -21.14383 -20.58541 -19.25522 -18.68295 -18.00370 -17.57498 -17.08603 -17.00698 -16.86833 -16.29600 -16.04889 -15.89931 -15.50473 -14.84173 -14.56703 -14.30908 -14.08620 -13.82719 -13.56240 -13.19803 -12.94196 -12.84812 -12.73158 -12.58736 -12.46593 -12.24224 -12.20028 -12.09814 -11.91483 -11.69132 -11.60650 -11.08989 -10.86138 -10.46981 -10.09501 -9.56243 -8.32686 -6.07717 0.59873 1.15805 1.46744 1.51762 1.63043 1.99771 2.31159 2.54234 3.02350 3.10089 3.13754 3.74421 3.83018 3.97131 4.01960 4.09800 4.26891 4.31638 4.34723 4.45287 4.57860 4.71091 4.73344 4.82189 4.83942 4.89012 4.95273 5.08054 5.17912 5.32314 5.45241 5.55780 5.60337 5.71509 5.90700 5.92407 6.37741 6.97752 7.08745 7.53125 7.96354 8.69742 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014326 B = 0.004727 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.017307 B = 5922.316915 C = 7322.387366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.000 4.000 3 Si 0.986 3.014 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.357 4.357 8 H 0.112 0.888 9 N -0.437 5.437 10 C 0.129 3.871 11 C -0.117 4.117 12 C 0.496 3.504 13 O -0.550 6.550 14 O -0.506 6.506 15 C 0.476 3.524 16 O -0.643 6.643 17 C -0.180 4.180 18 C -0.080 4.080 19 C -0.092 4.092 20 H 0.110 0.890 21 C -0.147 4.147 22 C 0.043 3.957 23 O -0.403 6.403 24 C 0.054 3.946 25 H 0.273 0.727 26 H 0.099 0.901 27 H 0.030 0.970 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.427 0.573 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.293 -3.415 -2.916 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.204 4.204 3 Si 0.809 3.191 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.484 4.484 8 H 0.129 0.871 9 N -0.153 5.153 10 C 0.005 3.995 11 C -0.155 4.155 12 C 0.339 3.661 13 O -0.440 6.440 14 O -0.319 6.319 15 C 0.269 3.731 16 O -0.534 6.534 17 C -0.201 4.201 18 C -0.101 4.101 19 C -0.111 4.111 20 H 0.128 0.872 21 C -0.185 4.185 22 C -0.033 4.033 23 O -0.323 6.323 24 C -0.022 4.022 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.049 0.951 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.289 0.711 31 H 0.157 0.843 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.854 -3.885 -2.979 11.003 hybrid contribution -0.970 1.022 0.599 1.531 sum 8.884 -2.863 -2.380 9.633 Atomic orbital electron populations 1.70028 1.08210 1.28998 1.45618 1.26358 0.95620 1.03364 0.95028 0.85051 0.78670 0.76548 0.78874 1.19430 1.21283 1.17591 1.19868 0.97326 0.84778 1.46401 0.87081 1.43542 1.37068 1.06697 1.27974 1.20993 0.90650 1.03384 0.84523 1.21606 0.97865 1.05508 0.90556 1.23330 0.87974 0.70988 0.83797 1.90705 1.22195 1.46203 1.84929 1.84501 1.47447 1.82336 1.17663 1.19348 0.85668 0.83602 0.84513 1.90590 1.58336 1.35719 1.68755 1.22697 0.99829 0.99666 0.97868 1.23475 0.95461 0.96629 0.94540 1.21774 0.94567 1.01883 0.92845 0.87167 1.23038 1.00287 0.98336 0.96820 1.23611 0.97331 0.96215 0.86166 1.89099 1.80976 1.29851 1.32352 1.23551 0.96452 0.83284 0.98961 0.91754 0.88287 0.95149 0.88202 0.86201 0.71105 0.84280 0.88475 0.91852 0.87909 0.88446 0.89890 0.89077 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.60 11.32 21.68 0.25 -47.35 16 2 C 0.00 -0.01 4.95 84.96 0.42 0.41 16 3 Si 0.99 37.35 29.60 68.60 2.03 39.38 16 4 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.29 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 7 C -0.36 -17.19 8.53 84.12 0.72 -16.47 16 8 H 0.11 4.86 6.66 -2.91 -0.02 4.84 16 9 N -0.44 -22.05 2.54 -639.80 -1.63 -23.68 16 10 C 0.13 6.47 4.18 86.38 0.36 6.83 16 11 C -0.12 -4.69 6.10 29.85 0.18 -4.51 16 12 C 0.50 18.33 8.33 71.23 0.59 18.92 16 13 O -0.55 -24.18 16.74 21.95 0.37 -23.82 16 14 O -0.51 -13.61 13.42 -51.44 -0.69 -14.30 16 15 C 0.48 23.72 7.55 86.53 0.65 24.37 16 16 O -0.64 -35.53 15.89 -4.21 -0.07 -35.59 16 17 C -0.18 -7.19 8.90 23.41 0.21 -6.98 16 18 C -0.08 -2.75 8.10 24.54 0.20 -2.55 16 19 C -0.09 -2.23 3.45 -10.52 -0.04 -2.26 16 20 H 0.11 2.28 7.87 -2.38 -0.02 2.26 16 21 C -0.15 -3.10 6.73 31.61 0.21 -2.88 16 22 C 0.04 0.82 7.63 72.49 0.55 1.37 16 23 O -0.40 -10.38 11.65 -148.98 -1.74 -12.11 16 24 C 0.05 1.20 7.17 72.49 0.52 1.72 16 25 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 26 H 0.10 5.37 5.33 -2.39 -0.01 5.36 16 27 H 0.03 1.68 7.54 -2.39 -0.02 1.66 16 28 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 29 H 0.12 4.40 8.14 -2.38 -0.02 4.38 16 30 H 0.43 7.07 9.10 -74.06 -0.67 6.40 16 31 H 0.14 5.07 6.32 -2.91 -0.02 5.05 16 32 H 0.10 3.81 7.49 -2.91 -0.02 3.79 16 33 H 0.06 1.56 7.73 -2.39 -0.02 1.54 16 34 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 2.05 7.86 -2.39 -0.02 2.03 16 Total: -1.00 -70.53 327.15 3.52 -67.01 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.41 Total: 32.51 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 4.58 Total: 17.96 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.38 Total: -71.03 kcal Atomic # 8 Polarization: -83.70 SS G_CDS: -2.13 Total: -85.82 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -70.53 3.52 -67.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.664 kcal (2) G-P(sol) polarization free energy of solvation -70.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds