Wall clock time and date at job start Tue Mar 31 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48498 * 109.47325 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47089 * 300.00194 * 3 2 1 6 6 H 1.48501 * 109.47254 * 59.99809 * 3 2 1 7 7 C 1.39074 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00142 * 159.26699 * 7 2 1 9 9 N 1.36822 * 119.99792 * 339.26560 * 7 2 1 10 10 C 1.46497 * 119.99906 * 324.84714 * 9 7 2 11 11 C 1.52999 * 109.47230 * 264.87096 * 10 9 7 12 12 C 1.50702 * 109.47126 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99668 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00089 * 180.02562 * 12 11 10 15 15 C 1.34774 * 119.99699 * 144.85354 * 9 7 2 16 16 O 1.21659 * 119.99536 * 180.02562 * 15 9 7 17 17 C 1.46951 * 120.00447 * 359.97438 * 15 9 7 18 18 C 1.33123 * 119.99939 * 180.27959 * 17 15 9 19 19 C 1.50703 * 119.99583 * 179.73056 * 18 17 15 20 20 H 1.08994 * 110.46122 * 357.38633 * 19 18 17 21 21 C 1.54510 * 110.51283 * 120.00197 * 19 18 17 22 22 C 1.54473 * 104.06423 * 118.64104 * 21 19 18 23 23 O 1.44417 * 104.80630 * 23.97772 * 22 21 19 24 24 C 1.44423 * 105.27440 * 319.48765 * 23 22 21 25 25 H 0.97000 * 119.99667 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47301 * 24.87212 * 10 9 7 27 27 H 1.09003 * 109.47031 * 144.86847 * 10 9 7 28 28 H 1.09005 * 109.46905 * 299.99847 * 11 10 9 29 29 H 1.08994 * 109.47435 * 59.99804 * 11 10 9 30 30 H 0.96702 * 116.99926 * 180.02562 * 14 12 11 31 31 H 1.07995 * 119.99737 * 0.02562 * 17 15 9 32 32 H 1.07998 * 120.00366 * 359.72292 * 18 17 15 33 33 H 1.09003 * 110.50719 * 237.28916 * 21 19 18 34 34 H 1.09000 * 110.51118 * 359.97438 * 21 19 18 35 35 H 1.09005 * 110.37260 * 142.81209 * 22 21 19 36 36 H 1.09002 * 110.37372 * 265.14221 * 22 21 19 37 37 H 1.09004 * 110.37640 * 281.67772 * 24 23 22 38 38 H 1.09009 * 110.37488 * 159.34155 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7075 1.3463 -0.0006 5 1 1.8888 2.3964 -1.2125 6 1 1.8888 2.3965 1.2125 7 6 2.0088 -1.2044 -0.0005 8 1 3.0364 -1.2345 -0.3317 9 7 1.3912 -2.3511 0.4185 10 6 0.4152 -2.3006 1.5098 11 6 1.1111 -2.6299 2.8320 12 6 0.1070 -2.5785 3.9546 13 8 -1.0467 -2.3060 3.7211 14 8 0.4946 -2.8345 5.2140 15 6 1.6807 -3.5271 -0.1728 16 8 1.1312 -4.5467 0.1995 17 6 2.6594 -3.5777 -1.2679 18 6 2.9412 -4.7385 -1.8555 19 6 3.9404 -4.7894 -2.9826 20 1 4.2998 -3.7878 -3.2186 21 6 5.1213 -5.7165 -2.6178 22 6 5.0700 -6.8288 -3.6885 23 8 4.3846 -6.2302 -4.8099 24 6 3.3153 -5.4514 -4.2306 25 1 -0.4850 0.8401 0.0004 26 1 -0.0163 -1.3012 1.5654 27 1 -0.3753 -3.0279 1.3243 28 1 1.5426 -3.6293 2.7764 29 1 1.9016 -1.9027 3.0175 30 1 -0.1853 -2.7898 5.9002 31 1 3.1469 -2.6726 -1.5986 32 1 2.4540 -5.6437 -1.5246 33 1 6.0649 -5.1738 -2.6757 34 1 4.9828 -6.1377 -1.6221 35 1 6.0787 -7.1264 -3.9751 36 1 4.5113 -7.6878 -3.3168 37 1 2.4873 -6.0990 -3.9421 38 1 2.9758 -4.6907 -4.9337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:10 Heat of formation + Delta-G solvation = -158.067534 kcal Electronic energy + Delta-G solvation = -22115.840940 eV Core-core repulsion = 18537.767651 eV Total energy + Delta-G solvation = -3578.073289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.85741 -39.40098 -38.55412 -35.84978 -35.14941 -33.99590 -32.04064 -31.02919 -30.20987 -28.59029 -25.31121 -24.55232 -22.89865 -22.02197 -20.58293 -19.63562 -18.98534 -17.78950 -17.12065 -16.39186 -16.18665 -15.92279 -15.64012 -15.30435 -15.10702 -14.54546 -14.37765 -13.72537 -13.48245 -13.10004 -12.79746 -12.64864 -12.56246 -11.97939 -11.69454 -11.54783 -11.49891 -11.30500 -11.20773 -11.17850 -11.10258 -10.75840 -10.51674 -10.41620 -10.17706 -10.08069 -9.80790 -9.27500 -8.69991 -8.62187 -7.69857 -6.50157 -4.18444 2.11573 2.64673 3.04802 3.14892 3.17887 3.41237 3.97948 4.00106 4.28590 4.63198 4.74635 4.87719 4.95015 5.05139 5.22397 5.31370 5.54072 5.58785 5.68535 5.71663 5.77203 5.83462 5.90395 5.98993 6.01499 6.16175 6.30027 6.35781 6.77530 6.78245 6.82608 7.03735 7.15578 7.23329 7.38218 7.74657 8.22198 8.28889 8.93678 9.36507 9.79616 10.50806 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.004625 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.288189 B = 6052.741845 C = 7417.338294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.043 3.957 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.426 5.426 10 C 0.124 3.876 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.524 6.524 15 C 0.489 3.511 16 O -0.608 6.608 17 C -0.146 4.146 18 C -0.123 4.123 19 C -0.090 4.090 20 H 0.089 0.911 21 C -0.147 4.147 22 C 0.044 3.956 23 O -0.380 6.380 24 C 0.052 3.948 25 H 0.273 0.727 26 H 0.119 0.881 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.401 0.599 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.783 -5.202 0.090 9.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.475 4.475 8 H 0.113 0.887 9 N -0.142 5.142 10 C 0.000 4.000 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.280 3.720 16 O -0.496 6.496 17 C -0.167 4.167 18 C -0.143 4.143 19 C -0.109 4.109 20 H 0.107 0.893 21 C -0.185 4.185 22 C -0.033 4.033 23 O -0.299 6.299 24 C -0.025 4.025 25 H 0.083 0.917 26 H 0.137 0.863 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.259 0.741 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.358 -5.468 -0.319 9.173 hybrid contribution -0.150 1.112 0.786 1.370 sum 7.208 -4.356 0.467 8.435 Atomic orbital electron populations 1.69897 1.06341 1.28168 1.43987 1.25448 0.95111 1.00117 0.95745 0.86075 0.80049 0.81641 0.78196 1.18988 1.20526 1.20360 1.19500 0.96704 0.84855 1.46421 0.88677 1.43330 1.37073 1.06189 1.27565 1.21227 0.90769 1.05739 0.82232 1.21852 0.97666 1.05090 0.91793 1.23761 0.89146 0.71740 0.82807 1.90707 1.20962 1.44336 1.84114 1.84589 1.46763 1.83482 1.18783 1.18587 0.85282 0.84214 0.83882 1.90629 1.56647 1.34764 1.67578 1.22893 0.98294 0.98213 0.97278 1.23250 0.96913 0.98681 0.95494 1.21643 0.94472 1.00605 0.94152 0.89303 1.22990 0.98576 0.96865 1.00067 1.23426 0.97556 0.95646 0.86628 1.89090 1.45602 1.65870 1.29370 1.23506 0.90230 0.94487 0.94237 0.91660 0.86342 0.91677 0.88329 0.87809 0.74111 0.85649 0.86207 0.90568 0.90003 0.89355 0.92294 0.91736 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.98 11.32 55.50 0.63 -21.35 16 2 C 0.04 1.05 4.95 -17.45 -0.09 0.96 16 3 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.35 -8.32 8.53 -15.01 -0.13 -8.45 16 8 H 0.10 2.14 6.66 -52.48 -0.35 1.79 16 9 N -0.43 -10.33 2.54 -116.21 -0.30 -10.63 16 10 C 0.12 2.96 4.18 -4.04 -0.02 2.94 16 11 C -0.13 -2.45 6.10 -27.88 -0.17 -2.62 16 12 C 0.48 8.86 8.33 36.01 0.30 9.16 16 13 O -0.51 -10.97 16.74 -18.75 -0.31 -11.28 16 14 O -0.52 -7.45 13.42 -39.25 -0.53 -7.98 16 15 C 0.49 11.62 7.55 -12.73 -0.10 11.52 16 16 O -0.61 -15.70 15.88 5.23 0.08 -15.62 16 17 C -0.15 -2.87 8.90 -37.83 -0.34 -3.21 16 18 C -0.12 -2.04 8.09 -36.09 -0.29 -2.34 16 19 C -0.09 -1.20 3.45 -90.20 -0.31 -1.51 16 20 H 0.09 1.16 7.87 -51.93 -0.41 0.75 16 21 C -0.15 -1.67 6.73 -25.17 -0.17 -1.84 16 22 C 0.04 0.48 7.63 37.93 0.29 0.77 16 23 O -0.38 -5.14 11.65 -35.23 -0.41 -5.56 16 24 C 0.05 0.67 7.17 37.94 0.27 0.95 16 25 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 26 H 0.12 3.05 5.33 -51.93 -0.28 2.77 16 27 H 0.06 1.67 7.54 -51.93 -0.39 1.28 16 28 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 29 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 30 H 0.40 3.74 9.10 45.56 0.41 4.16 16 31 H 0.13 2.35 6.31 -52.49 -0.33 2.02 16 32 H 0.12 2.12 7.49 -52.49 -0.39 1.72 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.92 7.73 -51.93 -0.40 0.52 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.83 7.86 -51.93 -0.41 0.42 16 38 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -30.80 327.15 -5.90 -36.70 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -4.22 Total: 10.96 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -0.75 Total: 6.33 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.33 Total: -31.98 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.17 Total: -40.43 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.80 -5.90 -36.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.369 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds