Wall clock time and date at job start Tue Mar 31 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46759 * 210.95740 * 3 2 1 5 5 C 1.36937 * 119.99931 * 264.56365 * 4 3 2 6 6 H 1.08002 * 119.99757 * 142.31781 * 5 4 3 7 7 C 1.38807 * 119.99991 * 322.30829 * 5 4 3 8 8 N 1.31619 * 120.00037 * 167.50513 * 7 5 4 9 9 Si 1.86809 * 120.00250 * 347.50708 * 7 5 4 10 10 H 1.48501 * 109.46653 * 92.30062 * 9 7 5 11 11 H 1.48496 * 109.47311 * 212.30571 * 9 7 5 12 12 H 1.48500 * 109.46643 * 332.30569 * 9 7 5 13 13 C 1.46505 * 119.99898 * 84.56051 * 4 3 2 14 14 C 1.50701 * 109.46772 * 84.57782 * 13 4 3 15 15 C 1.38048 * 120.05478 * 265.13172 * 14 13 4 16 16 C 1.38295 * 120.11248 * 180.02562 * 15 14 13 17 17 C 1.38340 * 120.24069 * 359.97438 * 16 15 14 18 18 C 1.38007 * 120.11409 * 359.97438 * 17 16 15 19 19 C 1.39272 * 120.05911 * 85.13833 * 14 13 4 20 20 C 1.48469 * 120.11976 * 359.94862 * 19 14 13 21 21 N 1.34049 * 126.66911 * 7.18927 * 20 19 14 22 22 N 1.28985 * 107.26380 * 179.83440 * 21 20 19 23 23 N 1.28736 * 108.94532 * 0.43198 * 22 21 20 24 24 H 0.96995 * 125.34400 * 179.74567 * 23 22 21 25 25 N 1.28873 * 109.31655 * 359.72355 * 23 22 21 26 26 H 4.40644 * 5.51543 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47167 * 90.96213 * 3 2 1 28 28 H 1.08992 * 109.47230 * 330.95846 * 3 2 1 29 29 H 0.97007 * 119.99972 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47136 * 324.57615 * 13 4 3 31 31 H 1.08994 * 109.46845 * 204.57559 * 13 4 3 32 32 H 1.07992 * 119.94711 * 0.04852 * 15 14 13 33 33 H 1.08000 * 119.88231 * 180.27793 * 16 15 14 34 34 H 1.07999 * 119.94024 * 180.02562 * 17 16 15 35 35 H 1.07998 * 120.06123 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1854 0.7105 5 6 3.4673 2.3143 0.0109 6 1 3.2426 3.2886 0.4191 7 6 4.0945 2.2063 -1.2227 8 7 4.1947 3.2604 -2.0045 9 14 4.7964 0.5650 -1.7733 10 1 3.7751 -0.1706 -2.5614 11 1 5.9979 0.7975 -2.6144 12 1 5.1739 -0.2366 -0.5816 13 6 3.2645 1.1623 2.1695 14 6 4.5924 0.5570 2.5453 15 6 4.6795 -0.7880 2.8436 16 6 5.8975 -1.3447 3.1891 17 6 7.0344 -0.5580 3.2373 18 6 6.9586 0.7875 2.9399 19 6 5.7339 1.3536 2.5924 20 6 5.6464 2.8006 2.2715 21 7 4.5276 3.5058 2.0527 22 7 4.8827 4.7221 1.8115 23 7 6.1667 4.8003 1.8619 24 1 6.6860 5.6060 1.7134 25 7 6.6539 3.6403 2.1410 26 1 -1.0503 -0.0002 -0.0003 27 1 3.0094 0.0181 -1.0275 28 1 3.0098 -0.8976 0.4988 29 1 4.6333 3.1850 -2.8665 30 1 2.4590 0.5653 2.5971 31 1 3.2068 2.1800 2.5555 32 1 3.7952 -1.4068 2.8068 33 1 5.9622 -2.3983 3.4174 34 1 7.9831 -0.9978 3.5073 35 1 7.8468 1.4007 2.9773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609021054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:51 Heat of formation + Delta-G solvation = 256.103647 kcal Electronic energy + Delta-G solvation = -22370.684919 eV Core-core repulsion = 19182.465862 eV Total energy + Delta-G solvation = -3188.219057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.58394 -39.01501 -36.23242 -33.70576 -32.85012 -32.28628 -32.01189 -30.37991 -29.94412 -26.85190 -25.70606 -24.16152 -23.56774 -21.98338 -21.14265 -20.22094 -18.41843 -18.08279 -16.61302 -16.34568 -16.22489 -15.45625 -15.02230 -14.70573 -14.34799 -13.62208 -13.44401 -13.16674 -12.81177 -12.78411 -12.50718 -12.35824 -11.77283 -11.43914 -11.08239 -10.93431 -10.80401 -10.65603 -10.61959 -10.24214 -10.20167 -9.84705 -9.78083 -9.23501 -9.13896 -8.63239 -8.42279 -8.05816 -6.95120 -5.93811 -3.39994 1.27737 1.76542 2.03127 2.96810 3.13655 3.25046 3.40918 3.44993 3.56452 3.66013 4.23049 4.44005 4.49838 4.95328 5.14645 5.23789 5.33413 5.34272 5.37516 5.50814 5.68995 5.91863 5.98490 6.16654 6.22044 6.26290 6.29497 6.39443 6.42127 6.71001 6.72435 6.80843 6.98731 7.12672 7.15323 7.32791 8.05309 8.41118 8.48872 8.99995 9.02133 9.70566 10.06058 11.19295 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.009834 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.062453 B = 2846.583547 C = 3727.737595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.161 4.161 3 C 0.223 3.777 4 N -0.583 5.583 5 C -0.242 4.242 6 H 0.110 0.890 7 C 0.027 3.973 8 N -0.904 5.904 9 Si 0.869 3.131 10 H -0.285 1.285 11 H -0.304 1.304 12 H -0.263 1.263 13 C 0.165 3.835 14 C -0.048 4.048 15 C -0.125 4.125 16 C -0.108 4.108 17 C -0.140 4.140 18 C -0.087 4.087 19 C 0.002 3.998 20 C 0.223 3.777 21 N -0.211 5.211 22 N -0.057 5.057 23 N -0.243 5.243 24 H 0.466 0.534 25 N -0.314 5.314 26 H 0.206 0.794 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.260 0.740 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -4.559 10.637 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.163 4.163 3 C 0.098 3.902 4 N -0.302 5.302 5 C -0.372 4.372 6 H 0.127 0.873 7 C -0.173 4.173 8 N -0.546 5.546 9 Si 0.701 3.299 10 H -0.213 1.213 11 H -0.232 1.232 12 H -0.187 1.187 13 C 0.039 3.961 14 C -0.054 4.054 15 C -0.143 4.143 16 C -0.127 4.127 17 C -0.158 4.158 18 C -0.108 4.108 19 C -0.002 4.002 20 C -0.057 4.057 21 N -0.083 5.083 22 N -0.052 5.052 23 N -0.085 5.085 24 H 0.318 0.682 25 N -0.165 5.165 26 H 0.223 0.777 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.978 -3.840 10.340 11.725 hybrid contribution 0.957 -0.913 -0.964 1.637 sum 4.935 -4.753 9.376 11.612 Atomic orbital electron populations 1.24664 0.95643 1.03501 1.03535 1.24892 0.95793 0.97697 0.97956 1.18503 0.82678 0.91099 0.97930 1.44113 1.72519 1.12158 1.01369 1.19337 1.31190 0.86449 1.00183 0.87317 1.25517 0.97902 0.96071 0.97780 1.69765 1.45605 1.28949 1.10283 0.87058 0.78192 0.85899 0.78719 1.21319 1.23249 1.18728 1.20455 0.89227 1.01549 0.84873 1.21112 0.97917 0.93396 0.92925 1.20973 0.97800 0.94402 1.01168 1.21172 0.92904 0.99356 0.99297 1.20884 0.98368 0.93574 1.02990 1.21092 0.96447 0.95237 0.98004 1.17141 0.94176 0.86088 1.02803 1.23361 0.84963 0.95929 1.01399 1.76251 1.23589 0.95465 1.13008 1.78911 0.94971 1.15776 1.15510 1.47440 1.05562 1.09607 1.45901 0.68234 1.74668 1.27151 0.92745 1.21958 0.77740 0.90708 0.91768 0.92949 0.93347 0.87903 0.86014 0.86414 0.86202 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.78 19.25 29.55 0.57 -4.21 16 2 C -0.16 -3.43 13.67 -37.12 -0.51 -3.94 16 3 C 0.22 4.98 4.59 -6.83 -0.03 4.95 16 4 N -0.58 -13.74 2.09 -177.95 -0.37 -14.12 16 5 C -0.24 -6.59 7.99 -15.06 -0.12 -6.71 16 6 H 0.11 3.22 6.25 -52.49 -0.33 2.89 16 7 C 0.03 0.77 5.43 -17.43 -0.09 0.67 16 8 N -0.90 -27.57 13.97 55.49 0.78 -26.80 16 9 Si 0.87 22.52 24.59 -169.99 -4.18 18.34 16 10 H -0.28 -7.20 6.71 56.52 0.38 -6.82 16 11 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 12 H -0.26 -6.58 6.92 56.52 0.39 -6.19 16 13 C 0.16 3.33 5.34 -5.19 -0.03 3.30 16 14 C -0.05 -0.90 5.48 -104.31 -0.57 -1.47 16 15 C -0.12 -1.97 9.59 -39.63 -0.38 -2.35 16 16 C -0.11 -1.50 10.04 -39.52 -0.40 -1.90 16 17 C -0.14 -1.95 10.03 -39.63 -0.40 -2.35 16 18 C -0.09 -1.42 9.70 -39.26 -0.38 -1.80 16 19 C 0.00 0.04 5.88 -104.89 -0.62 -0.58 16 20 C 0.22 4.53 7.44 -156.30 -1.16 3.37 16 21 N -0.21 -4.56 5.66 32.16 0.18 -4.38 16 22 N -0.06 -1.14 13.39 60.35 0.81 -0.33 16 23 N -0.24 -4.02 7.90 60.35 0.48 -3.55 16 24 H 0.47 5.31 8.96 -340.37 -3.05 2.26 16 25 N -0.31 -5.78 12.11 32.17 0.39 -5.39 16 26 H 0.21 2.94 7.80 -54.08 -0.42 2.52 16 27 H 0.08 1.84 2.74 -51.93 -0.14 1.70 16 28 H 0.06 1.27 8.03 -51.93 -0.42 0.86 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.05 0.88 8.02 -51.93 -0.42 0.46 16 31 H 0.10 2.17 5.29 -51.93 -0.27 1.90 16 32 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.13 1.85 7.90 -52.49 -0.41 1.44 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -33.66 302.35 -7.39 -41.04 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.90 Total: 3.64 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -4.12 Total: -13.01 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 2.26 Total: -54.56 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.18 Total: 18.34 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.66 -7.39 -41.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609021054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 297.146 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 263.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 256.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds