Wall clock time and date at job start Tue Mar 31 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86805 * 119.99520 * 2 1 4 4 H 1.48499 * 109.46717 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47132 * 299.99917 * 3 2 1 6 6 H 1.48497 * 109.46968 * 60.00000 * 3 2 1 7 7 C 1.38812 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00118 * 195.84615 * 7 2 1 9 9 N 1.36938 * 119.99943 * 15.84443 * 7 2 1 10 10 C 1.46502 * 119.99914 * 42.42397 * 9 7 2 11 11 C 1.50701 * 109.46723 * 89.99974 * 10 9 7 12 12 C 1.36609 * 120.18549 * 90.00162 * 11 10 9 13 13 O 1.35877 * 119.57046 * 359.97438 * 12 11 10 14 14 C 1.39810 * 120.86213 * 179.97438 * 12 11 10 15 15 C 1.36021 * 120.93600 * 0.02562 * 14 12 11 16 16 C 1.40553 * 119.72794 * 0.28338 * 15 14 12 17 17 C 1.40536 * 121.22141 * 180.28104 * 16 15 14 18 18 C 1.36093 * 119.67079 * 179.72997 * 17 16 15 19 19 C 1.39379 * 120.99977 * 359.67879 * 18 17 16 20 20 C 1.36083 * 120.98839 * 0.02618 * 19 18 17 21 21 C 1.40416 * 120.19339 * 269.97671 * 11 10 9 22 22 C 1.46500 * 120.00261 * 222.42564 * 9 7 2 23 23 C 1.53005 * 117.49460 * 13.85216 * 22 9 7 24 24 C 1.53001 * 59.99986 * 252.51032 * 23 22 9 25 25 H 0.96996 * 120.00244 * 354.88780 * 1 2 3 26 26 H 1.08993 * 109.47185 * 330.00151 * 10 9 7 27 27 H 1.09002 * 109.47022 * 209.99625 * 10 9 7 28 28 H 0.96700 * 114.00159 * 269.97746 * 13 12 11 29 29 H 1.07999 * 119.53720 * 180.02562 * 14 12 11 30 30 H 1.07996 * 120.13693 * 180.02562 * 15 14 12 31 31 H 1.07995 * 120.16169 * 359.41447 * 17 16 15 32 32 H 1.07999 * 119.49968 * 179.70344 * 18 17 16 33 33 H 1.08007 * 119.50650 * 180.02562 * 19 18 17 34 34 H 1.07996 * 120.17767 * 179.97438 * 20 19 18 35 35 H 1.08996 * 115.55083 * 159.55769 * 22 9 7 36 36 H 1.08999 * 117.50054 * 0.02562 * 23 22 9 37 37 H 1.08997 * 117.49713 * 145.01683 * 23 22 9 38 38 H 1.08993 * 117.49848 * 252.50903 * 24 23 22 39 39 H 1.09002 * 117.51310 * 107.47828 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0596 -1.2200 0.2548 9 7 1.3648 -2.3654 -0.3248 10 6 0.4261 -2.3932 -1.4493 11 6 1.1666 -2.7475 -2.7131 12 6 1.2981 -4.0543 -3.0888 13 8 0.7574 -5.0320 -2.3154 14 6 1.9818 -4.3989 -4.2586 15 6 2.5343 -3.4430 -5.0530 16 6 2.4238 -2.0887 -4.6936 17 6 2.9776 -1.0751 -5.4941 18 6 2.8473 0.2266 -5.1188 19 6 2.1658 0.5728 -3.9533 20 6 1.6112 -0.3807 -3.1564 21 6 1.7250 -1.7363 -3.5115 22 6 1.6127 -3.5821 0.4526 23 6 2.3354 -3.4292 1.7925 24 6 3.0638 -4.0452 0.5963 25 1 -0.4850 0.8366 0.0748 26 1 -0.0355 -1.4123 -1.5616 27 1 -0.3461 -3.1387 -1.2596 28 1 1.3550 -5.3708 -1.6348 29 1 2.0725 -5.4389 -4.5355 30 1 3.0592 -3.7237 -5.9541 31 1 3.5084 -1.3281 -6.3999 32 1 3.2781 1.0030 -5.7336 33 1 2.0764 1.6135 -3.6786 34 1 1.0864 -0.0977 -2.2560 35 1 0.8437 -4.3512 0.3801 36 1 2.6260 -2.4233 2.0957 37 1 2.0418 -4.0977 2.6018 38 1 3.2495 -5.1189 0.6187 39 1 3.8340 -3.4448 0.1121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050898579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:15 Heat of formation + Delta-G solvation = 50.334006 kcal Electronic energy + Delta-G solvation = -22828.776719 eV Core-core repulsion = 19702.882413 eV Total energy + Delta-G solvation = -3125.894306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.06388 -37.66689 -36.91460 -34.67051 -34.07895 -32.10166 -30.54345 -29.25672 -28.32549 -25.62198 -23.73576 -22.68967 -22.26897 -21.43215 -20.38170 -19.73198 -18.13892 -16.78432 -16.51340 -16.03786 -15.44017 -15.26025 -14.56442 -14.16671 -14.00728 -13.69049 -13.43959 -13.12543 -12.76522 -12.74217 -12.54551 -11.96899 -11.78380 -11.25494 -11.06739 -10.92871 -10.77114 -10.64896 -10.53131 -10.42434 -10.36866 -10.06915 -9.70455 -9.63296 -9.46181 -9.06658 -8.57878 -7.95994 -7.17742 -6.56003 -5.99146 -3.59496 1.10642 1.51543 2.62520 3.21136 3.31625 3.35449 3.43248 4.27789 4.57803 4.85022 4.88898 5.08772 5.20057 5.25705 5.35990 5.42107 5.54436 5.73813 5.82735 5.88021 5.92407 5.99264 6.07512 6.16430 6.36599 6.39104 6.41432 6.55964 6.58004 6.73942 6.77051 6.84994 6.93066 6.97624 7.05824 7.12436 7.27214 7.35390 7.52062 7.60292 7.68165 8.20718 8.38742 8.99379 9.57600 10.18913 10.99928 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.010318 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.863331 B = 2713.117390 C = 4337.018251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.286 1.286 7 C -0.250 4.250 8 H 0.060 0.940 9 N -0.538 5.538 10 C 0.176 3.824 11 C -0.073 4.073 12 C 0.081 3.919 13 O -0.497 6.497 14 C -0.129 4.129 15 C -0.123 4.123 16 C -0.056 4.056 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.149 4.149 20 C -0.074 4.074 21 C -0.028 4.028 22 C 0.127 3.873 23 C -0.192 4.192 24 C -0.232 4.232 25 H 0.261 0.739 26 H 0.105 0.895 27 H 0.049 0.951 28 H 0.380 0.620 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.158 0.842 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 -4.585 -6.884 9.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.180 4.180 3 Si 0.712 3.288 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.212 1.212 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.253 5.253 10 C 0.051 3.949 11 C -0.077 4.077 12 C 0.036 3.964 13 O -0.307 6.307 14 C -0.148 4.148 15 C -0.142 4.142 16 C -0.056 4.056 17 C -0.147 4.147 18 C -0.130 4.130 19 C -0.167 4.167 20 C -0.092 4.092 21 C -0.029 4.029 22 C 0.018 3.982 23 C -0.231 4.231 24 C -0.273 4.273 25 H 0.071 0.929 26 H 0.123 0.877 27 H 0.068 0.932 28 H 0.235 0.765 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.175 0.825 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.990 -4.304 -7.266 8.959 hybrid contribution 1.192 0.769 0.372 1.467 sum 4.183 -3.535 -6.894 8.805 Atomic orbital electron populations 1.69894 1.05335 1.26438 1.50792 1.25314 0.95166 0.98584 0.98940 0.86532 0.80333 0.84038 0.77903 1.19644 1.20489 1.21244 1.18974 0.92411 0.83944 1.42632 0.92239 1.43285 1.49667 1.04954 1.27403 1.20005 0.90218 1.03195 0.81463 1.21406 0.97747 0.91668 0.96868 1.17873 0.98743 0.87398 0.92373 1.84751 1.42822 1.53998 1.49101 1.21005 0.98453 0.99438 0.95881 1.20637 1.01850 0.91704 0.99960 1.18118 0.98779 0.93567 0.95112 1.20783 1.01742 0.92649 0.99533 1.20743 0.99227 0.96095 0.96930 1.20812 1.00640 0.99525 0.95709 1.21850 0.96615 0.91500 0.99188 1.17885 0.97588 0.93819 0.93612 1.21206 0.91209 0.91487 0.94330 1.23045 1.06509 1.01905 0.91638 1.23406 1.00268 0.98539 1.05045 0.92888 0.87704 0.93233 0.76506 0.86477 0.86282 0.86534 0.86949 0.86904 0.82464 0.89009 0.88281 0.90727 0.90887 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.25 11.26 55.49 0.62 -22.63 16 2 C 0.02 0.52 3.10 -17.43 -0.05 0.47 16 3 Si 0.88 20.27 29.12 -169.99 -4.95 15.32 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.29 7.36 -15.06 -0.11 -6.40 16 8 H 0.06 1.57 7.42 -52.49 -0.39 1.18 16 9 N -0.54 -12.47 2.73 -167.02 -0.46 -12.92 16 10 C 0.18 4.01 4.79 -5.19 -0.02 3.98 16 11 C -0.07 -1.53 5.48 -104.39 -0.57 -2.11 16 12 C 0.08 1.52 6.62 -39.58 -0.26 1.26 16 13 O -0.50 -8.56 12.44 -19.35 -0.24 -8.80 16 14 C -0.13 -2.13 9.88 -39.79 -0.39 -2.52 16 15 C -0.12 -1.98 9.76 -39.51 -0.39 -2.36 16 16 C -0.06 -1.02 5.74 -106.81 -0.61 -1.63 16 17 C -0.13 -2.08 9.77 -39.49 -0.39 -2.46 16 18 C -0.11 -1.82 9.95 -39.93 -0.40 -2.21 16 19 C -0.15 -2.80 9.95 -39.93 -0.40 -3.20 16 20 C -0.07 -1.58 8.87 -39.47 -0.35 -1.93 16 21 C -0.03 -0.59 5.74 -106.84 -0.61 -1.21 16 22 C 0.13 2.55 6.06 -67.93 -0.41 2.14 16 23 C -0.19 -3.69 9.84 -26.73 -0.26 -3.95 16 24 C -0.23 -4.21 10.11 -26.73 -0.27 -4.48 16 25 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 26 H 0.11 2.63 4.18 -51.93 -0.22 2.42 16 27 H 0.05 1.11 7.38 -51.93 -0.38 0.73 16 28 H 0.38 5.46 8.25 45.56 0.38 5.83 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.11 2.00 8.06 -52.48 -0.42 1.57 16 34 H 0.16 3.70 3.08 -52.49 -0.16 3.54 16 35 H 0.09 1.70 7.86 -51.93 -0.41 1.29 16 36 H 0.10 2.12 7.04 -51.93 -0.37 1.76 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.69 7.99 -51.93 -0.42 1.27 16 LS Contribution 317.99 15.07 4.79 4.79 Total: -1.00 -27.12 317.99 -9.79 -36.92 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -4.06 Total: 13.93 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -5.50 Total: -26.61 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.17 Total: -35.55 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.24 Total: -8.80 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.95 Total: 15.32 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.12 -9.79 -36.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.250 kcal (2) G-P(sol) polarization free energy of solvation -27.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds