Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48494 * 109.46916 * 269.99793 * 3 2 1 5 5 H 1.48504 * 109.46985 * 30.00201 * 3 2 1 6 6 H 1.48503 * 109.46487 * 149.99782 * 3 2 1 7 7 C 1.37881 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99450 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46496 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.46823 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99876 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99937 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99857 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.46938 * 179.97438 * 14 12 11 16 16 C 1.39370 * 119.51084 * 270.29018 * 15 14 12 17 17 C 1.36098 * 120.99091 * 180.28202 * 16 15 14 18 18 C 1.40536 * 119.65063 * 359.71066 * 17 16 15 19 19 C 1.40540 * 121.28217 * 180.02562 * 18 17 16 20 20 C 1.36091 * 119.65665 * 180.02562 * 19 18 17 21 21 C 1.39376 * 120.98533 * 359.95297 * 20 19 18 22 22 C 1.36089 * 120.99181 * 0.02562 * 21 20 19 23 23 C 1.40540 * 119.65387 * 0.02562 * 22 21 20 24 24 C 1.36095 * 119.49925 * 90.00320 * 15 14 12 25 25 H 0.96997 * 120.00189 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47323 * 60.00167 * 9 7 2 27 27 H 1.08996 * 109.46868 * 299.99547 * 9 7 2 28 28 H 1.08999 * 109.47240 * 60.00065 * 10 9 7 29 29 H 1.08996 * 109.47151 * 299.99323 * 10 9 7 30 30 H 0.97004 * 119.99928 * 0.02562 * 11 10 9 31 31 H 1.09006 * 109.46710 * 59.99937 * 14 12 11 32 32 H 1.09000 * 109.47190 * 300.00446 * 14 12 11 33 33 H 1.07998 * 119.50525 * 359.97438 * 16 15 14 34 34 H 1.07997 * 120.17524 * 179.73800 * 17 16 15 35 35 H 1.08002 * 120.17303 * 0.02639 * 19 18 17 36 36 H 1.07998 * 119.50902 * 179.97438 * 20 19 18 37 37 H 1.08007 * 119.50474 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.17251 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.17715 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5128 -4.9308 0.0024 12 6 2.1867 -6.0980 0.0031 13 8 3.3995 -6.0979 0.0027 14 6 1.4332 -7.4031 0.0043 15 6 2.4125 -8.5485 0.0042 16 6 2.8625 -9.0669 -1.2088 17 6 3.7424 -10.1046 -1.2441 18 6 4.2109 -10.6601 -0.0412 19 6 5.1201 -11.7317 -0.0376 20 6 5.5519 -12.2446 1.1468 21 6 5.1064 -11.7223 2.3598 22 6 4.2266 -10.6848 2.3951 23 6 3.7575 -10.1295 1.1923 24 6 2.8489 -9.0573 1.1886 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8713 -3.6039 0.8923 29 1 2.8726 -3.6047 -0.8877 30 1 0.5428 -4.9308 0.0016 31 1 0.8062 -7.4615 -0.8855 32 1 0.8068 -7.4602 0.8945 33 1 2.5037 -8.6421 -2.1346 34 1 4.0791 -10.4988 -2.1914 35 1 5.4745 -12.1461 -0.9699 36 1 6.2503 -13.0684 1.1467 37 1 5.4650 -12.1475 3.2857 38 1 3.8905 -10.2901 3.3426 39 1 2.4948 -8.6427 2.1209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = -13.965863 kcal Electronic energy + Delta-G solvation = -20247.677016 eV Core-core repulsion = 17118.994459 eV Total energy + Delta-G solvation = -3128.682557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55345 -39.18301 -36.76062 -34.82134 -33.07717 -32.84123 -31.82222 -29.87240 -29.46372 -27.40180 -24.66446 -23.43224 -22.39767 -22.02629 -20.96218 -20.04034 -17.45569 -17.05123 -16.81148 -16.35967 -16.11601 -15.14438 -15.00268 -14.74832 -14.47513 -14.23645 -13.73537 -13.68685 -13.41457 -13.11350 -13.08245 -12.73249 -12.30421 -12.04064 -11.72045 -11.29699 -11.21460 -11.08444 -11.03532 -10.91364 -10.64713 -10.33398 -10.05603 -9.80401 -9.47862 -9.21093 -8.58580 -8.54626 -8.35744 -7.95351 -6.10549 -4.13343 0.45617 0.91790 1.98335 2.85577 3.01383 3.28755 3.34834 3.39052 3.73641 4.09608 4.41449 4.45454 4.59102 4.72489 4.79214 4.93426 5.08316 5.12836 5.20554 5.26507 5.27561 5.34778 5.45145 5.49128 5.66917 5.86764 5.95986 6.13061 6.14936 6.32822 6.34351 6.34636 6.47609 6.54939 6.73330 6.74139 6.91861 6.92627 7.50623 7.60499 7.87784 8.01673 8.26943 8.66651 8.92753 9.51563 11.01030 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.037310 B = 0.002542 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.287936 B =11011.104570 C =11185.681268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.724 5.724 12 C 0.505 3.495 13 O -0.542 6.542 14 C -0.108 4.108 15 C -0.053 4.053 16 C -0.096 4.096 17 C -0.110 4.110 18 C -0.053 4.053 19 C -0.106 4.106 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.049 4.049 24 C -0.094 4.094 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.398 0.602 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 -24.646 1.127 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.374 5.374 12 C 0.290 3.710 13 O -0.420 6.420 14 C -0.148 4.148 15 C -0.054 4.054 16 C -0.114 4.114 17 C -0.128 4.128 18 C -0.053 4.053 19 C -0.124 4.124 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.121 4.121 23 C -0.049 4.049 24 C -0.112 4.112 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.231 0.769 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.516 -24.493 1.132 24.932 hybrid contribution -0.064 1.067 -0.014 1.069 sum 4.452 -23.426 1.118 23.872 Atomic orbital electron populations 1.69955 1.06080 1.26881 1.50413 1.25001 0.94903 0.99420 0.94984 0.86511 0.79849 0.82986 0.78215 1.20543 1.21148 1.19727 1.21059 0.93251 0.90418 1.51314 0.92274 1.19322 0.94196 0.91140 0.97818 1.21709 0.96032 0.81565 1.00725 1.46345 1.10502 1.06526 1.74046 1.20416 0.88315 0.85218 0.77041 1.90706 1.13916 1.87692 1.49663 1.20780 0.97652 0.91099 1.05282 1.19041 0.97513 0.95465 0.93363 1.20725 0.97228 0.95928 0.97473 1.20943 0.97842 0.97056 0.96961 1.18092 0.97630 0.96524 0.93026 1.21014 0.97088 0.95916 0.98416 1.20812 1.00343 1.00298 0.92534 1.20815 0.98103 0.97151 0.97983 1.21045 0.97544 0.96420 0.97114 1.18050 0.97531 0.96301 0.92974 1.20848 0.96864 0.95552 0.97925 0.92841 0.95949 0.95946 0.92651 0.92645 0.76892 0.87981 0.88009 0.85968 0.85600 0.85762 0.86218 0.86164 0.85640 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.60 5.61 -4.04 -0.02 2.57 16 11 N -0.72 -12.32 5.56 -60.29 -0.33 -12.66 16 12 C 0.51 8.35 7.82 -10.98 -0.09 8.26 16 13 O -0.54 -11.29 16.03 5.56 0.09 -11.20 16 14 C -0.11 -1.25 5.80 -29.03 -0.17 -1.42 16 15 C -0.05 -0.68 4.34 -104.97 -0.46 -1.14 16 16 C -0.10 -1.16 9.59 -39.93 -0.38 -1.54 16 17 C -0.11 -1.25 9.77 -39.48 -0.39 -1.64 16 18 C -0.05 -0.64 5.74 -106.84 -0.61 -1.25 16 19 C -0.11 -1.06 9.77 -39.49 -0.39 -1.45 16 20 C -0.12 -1.11 9.95 -39.93 -0.40 -1.51 16 21 C -0.12 -1.14 9.95 -39.93 -0.40 -1.54 16 22 C -0.10 -1.10 9.77 -39.49 -0.39 -1.48 16 23 C -0.05 -0.61 5.74 -106.83 -0.61 -1.22 16 24 C -0.09 -1.19 9.37 -39.48 -0.37 -1.56 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.40 5.70 8.47 -40.82 -0.35 5.36 16 31 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.10 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -33.36 338.25 -10.03 -43.38 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.38 Total: 2.34 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -5.22 Total: -18.01 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.40 Total: -38.00 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.36 -10.03 -43.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.416 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds