Wall clock time and date at job start Tue Mar 31 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99919 * 2 1 4 4 C 1.53002 * 109.46957 * 184.59831 * 3 2 1 5 5 N 1.46895 * 109.46874 * 69.16031 * 4 3 2 6 6 C 1.46898 * 111.00171 * 291.87516 * 5 4 3 7 7 C 1.50698 * 109.47487 * 172.48604 * 6 5 4 8 8 H 1.08007 * 120.00043 * 4.60247 * 7 6 5 9 9 C 1.37872 * 120.00463 * 184.60232 * 7 6 5 10 10 N 1.31522 * 119.99978 * 354.74849 * 9 7 6 11 11 Si 1.86803 * 120.00363 * 174.74892 * 9 7 6 12 12 H 1.48499 * 109.46832 * 5.00084 * 11 9 7 13 13 H 1.48498 * 109.47099 * 125.00704 * 11 9 7 14 14 H 1.48502 * 109.46928 * 245.00075 * 11 9 7 15 15 C 1.46902 * 110.99850 * 167.92209 * 5 4 3 16 16 C 1.50705 * 109.47146 * 293.95084 * 15 5 4 17 17 C 1.40313 * 126.64828 * 260.27371 * 16 15 5 18 18 C 1.35166 * 107.12286 * 180.14411 * 17 16 15 19 19 O 1.33908 * 108.78444 * 359.62190 * 18 17 16 20 20 C 1.34936 * 109.38155 * 0.24280 * 19 18 17 21 21 C 1.46466 * 125.99966 * 179.97438 * 20 19 18 22 22 O 1.21628 * 120.00476 * 180.02562 * 21 20 19 23 23 O 1.34900 * 120.00272 * 0.02582 * 21 20 19 24 24 H 1.08997 * 109.47119 * 184.90395 * 1 2 3 25 25 H 1.09007 * 109.47261 * 304.89840 * 1 2 3 26 26 H 1.08999 * 109.47463 * 64.89887 * 1 2 3 27 27 H 1.09005 * 109.47102 * 64.60179 * 3 2 1 28 28 H 1.09001 * 109.46879 * 304.60011 * 3 2 1 29 29 H 1.08991 * 109.47412 * 309.15736 * 4 3 2 30 30 H 1.09001 * 109.47195 * 189.15534 * 4 3 2 31 31 H 1.09005 * 109.47166 * 292.48248 * 6 5 4 32 32 H 1.08997 * 109.47475 * 52.48316 * 6 5 4 33 33 H 0.96997 * 120.00488 * 180.02562 * 10 9 7 34 34 H 1.09007 * 109.46855 * 173.95399 * 15 5 4 35 35 H 1.08997 * 109.47518 * 53.95284 * 15 5 4 36 36 H 1.07997 * 126.43950 * 0.02562 * 17 16 15 37 37 H 1.08000 * 125.60885 * 179.88539 * 18 17 16 38 38 H 0.96693 * 117.00366 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5312 1.1865 -0.1156 5 7 3.8837 0.6997 -1.4560 6 6 3.4527 -0.6924 -1.6407 7 6 3.6622 -1.0968 -3.0772 8 1 4.1425 -0.4167 -3.7652 9 6 3.2408 -2.3350 -3.5134 10 7 2.7504 -3.2026 -2.6553 11 14 3.3664 -2.7803 -5.3232 12 1 4.0581 -1.6887 -6.0547 13 1 4.1373 -4.0410 -5.4704 14 1 2.0035 -2.9654 -5.8832 15 6 5.3242 0.8424 -1.7059 16 6 5.6841 2.3052 -1.7496 17 6 5.8748 3.0867 -2.8992 18 6 6.1859 4.3351 -2.4847 19 8 6.1865 4.3572 -1.1458 20 6 5.8828 3.1286 -0.6775 21 6 5.7839 2.7450 0.7325 22 8 5.5019 1.6007 1.0332 23 8 6.0056 3.6607 1.6979 24 1 -0.3633 -1.0239 0.0878 25 1 -0.3634 0.5880 0.8429 26 1 -0.3634 0.4359 -0.9306 27 1 1.7553 1.8167 0.9284 28 1 1.6248 1.8747 -0.8459 29 1 3.8989 0.4858 0.6338 30 1 3.9855 2.1639 0.0470 31 1 4.0380 -1.3432 -0.9911 32 1 2.3961 -0.7822 -1.3884 33 1 2.4542 -4.0739 -2.9620 34 1 5.5753 0.3778 -2.6594 35 1 5.8818 0.3548 -0.9062 36 1 5.7910 2.7530 -3.9229 37 1 6.3949 5.1773 -3.1275 38 1 5.9292 3.3604 2.6139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071226591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:30 Heat of formation + Delta-G solvation = -84.811181 kcal Electronic energy + Delta-G solvation = -23381.443733 eV Core-core repulsion = 19806.547078 eV Total energy + Delta-G solvation = -3574.896655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.68432 -40.02930 -37.83734 -36.52114 -35.63211 -33.22349 -32.31344 -30.28648 -29.43048 -27.08548 -25.95605 -24.81545 -23.63517 -22.25614 -21.52778 -20.20433 -19.67199 -18.31584 -17.29592 -16.87315 -16.22246 -15.98485 -15.67410 -15.37337 -15.13815 -14.74640 -14.34349 -13.71898 -13.57054 -13.53048 -13.23577 -12.86428 -12.46587 -12.13648 -11.95762 -11.68219 -11.39765 -11.19051 -10.99712 -10.78158 -10.59220 -10.43644 -10.33948 -10.18430 -9.83631 -9.50589 -9.19390 -8.74123 -8.54091 -8.22875 -7.05767 -5.87946 -3.87570 0.93730 2.39540 2.52667 2.97304 3.35014 3.36815 3.44013 3.47637 4.45669 4.52720 4.81087 4.90802 5.16673 5.28991 5.47362 5.61371 5.63204 5.78017 5.82421 5.88252 5.92252 5.96458 6.07889 6.18130 6.24556 6.36184 6.38496 6.48373 6.69715 6.77620 6.97369 7.58329 7.67978 7.81664 7.88027 7.92264 8.36041 8.44423 8.72383 9.20832 9.73578 11.22426 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.006262 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.295118 B = 4470.499465 C = 5653.120880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.365 6.365 3 C 0.063 3.937 4 C 0.057 3.943 5 N -0.525 5.525 6 C 0.180 3.820 7 C -0.507 4.507 8 H 0.059 0.941 9 C 0.056 3.944 10 N -0.893 5.893 11 Si 0.891 3.109 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.285 1.285 15 C 0.110 3.890 16 C -0.035 4.035 17 C -0.209 4.209 18 C -0.002 4.002 19 O -0.159 6.159 20 C -0.089 4.089 21 C 0.557 3.443 22 O -0.471 6.471 23 O -0.512 6.512 24 H 0.081 0.919 25 H 0.028 0.972 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.065 0.935 31 H -0.015 1.015 32 H 0.078 0.922 33 H 0.258 0.742 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.161 0.839 37 H 0.211 0.789 38 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 15.150 5.167 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C -0.014 4.014 4 C -0.071 4.071 5 N -0.250 5.250 6 C 0.056 3.944 7 C -0.546 4.546 8 H 0.077 0.923 9 C -0.145 4.145 10 N -0.532 5.532 11 Si 0.719 3.281 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.211 1.211 15 C -0.017 4.017 16 C -0.038 4.038 17 C -0.228 4.228 18 C -0.072 4.072 19 O -0.054 6.054 20 C -0.139 4.139 21 C 0.402 3.598 22 O -0.360 6.360 23 O -0.324 6.324 24 H 0.099 0.901 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.003 0.997 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.179 0.821 37 H 0.228 0.772 38 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.840 15.125 4.721 16.303 hybrid contribution 0.110 -0.773 -0.050 0.782 sum 3.950 14.352 4.671 15.601 Atomic orbital electron populations 1.22635 0.82741 1.02127 0.98876 1.88181 1.18394 1.27094 1.94638 1.22646 0.95084 0.85241 0.98391 1.22637 0.92142 0.99966 0.92334 1.62306 1.11618 1.26741 1.24350 1.20196 0.98779 0.79695 0.95712 1.21272 1.38162 0.99788 0.95384 0.92268 1.24945 0.95877 0.96391 0.97261 1.70012 1.43170 1.06601 1.33443 0.86571 0.77662 0.78030 0.85849 1.19859 1.21375 1.21111 1.20654 0.91062 0.86848 1.03168 1.21058 0.94217 0.98142 0.90392 1.21834 1.07332 0.93079 1.00567 1.24420 1.02058 0.99910 0.80765 1.84083 1.68692 1.30811 1.21830 1.20379 1.17808 0.84568 0.91162 1.18826 0.74220 0.82958 0.83836 1.91168 1.42936 1.19661 1.82227 1.84645 1.83612 1.44070 1.20082 0.90070 0.95385 0.94439 0.94689 0.93165 0.92889 0.91663 0.99716 0.90409 0.93254 0.88203 0.93486 0.82088 0.77227 0.72677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 16 2 O -0.36 -7.85 7.55 -35.23 -0.27 -8.11 16 3 C 0.06 1.21 6.15 37.16 0.23 1.44 16 4 C 0.06 1.18 3.60 -3.83 -0.01 1.16 16 5 N -0.52 -12.04 4.49 -237.52 -1.07 -13.10 16 6 C 0.18 4.93 4.40 -4.98 -0.02 4.91 16 7 C -0.51 -14.53 8.46 -34.44 -0.29 -14.82 16 8 H 0.06 1.65 6.83 -52.48 -0.36 1.29 16 9 C 0.06 1.63 5.45 -17.82 -0.10 1.53 16 10 N -0.89 -27.24 13.30 55.43 0.74 -26.50 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.11 2.29 4.97 -4.97 -0.02 2.26 16 16 C -0.04 -0.61 5.37 -104.42 -0.56 -1.17 16 17 C -0.21 -2.91 10.83 -39.90 -0.43 -3.34 16 18 C 0.00 -0.02 12.08 29.64 0.36 0.34 16 19 O -0.16 -2.20 10.67 4.76 0.05 -2.15 16 20 C -0.09 -1.42 6.39 -36.85 -0.24 -1.65 16 21 C 0.56 8.43 6.84 34.04 0.23 8.66 16 22 O -0.47 -8.28 11.58 -19.36 -0.22 -8.51 16 23 O -0.51 -5.83 13.44 -42.48 -0.57 -6.40 16 24 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 1.20 6.65 -51.93 -0.35 0.85 16 30 H 0.07 1.22 3.55 -51.93 -0.18 1.04 16 31 H -0.02 -0.45 8.14 -51.93 -0.42 -0.88 16 32 H 0.08 2.27 4.91 -51.93 -0.26 2.02 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.10 2.16 6.37 -51.93 -0.33 1.83 16 35 H 0.05 1.02 7.00 -51.93 -0.36 0.66 16 36 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.21 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.41 2.60 9.11 45.56 0.42 3.02 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -35.02 315.13 -5.30 -40.32 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.94 Total: 1.80 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 0.26 Total: 1.01 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.33 Total: -39.60 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.01 Total: -25.17 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.02 -5.30 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071226591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.494 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds