Wall clock time and date at job start Tue Mar 31 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99964 * 2 1 4 4 C 1.53004 * 109.46993 * 184.73177 * 3 2 1 5 5 N 1.46903 * 109.47111 * 69.39820 * 4 3 2 6 6 C 1.46897 * 110.99913 * 286.21599 * 5 4 3 7 7 C 1.50699 * 109.47641 * 302.85166 * 6 5 4 8 8 H 1.07995 * 119.99888 * 4.36620 * 7 6 5 9 9 C 1.37871 * 119.99981 * 184.35765 * 7 6 5 10 10 N 1.31515 * 120.00284 * 354.86313 * 9 7 6 11 11 Si 1.86804 * 119.99920 * 174.86109 * 9 7 6 12 12 H 1.48499 * 109.46951 * 65.00045 * 11 9 7 13 13 H 1.48496 * 109.46916 * 184.99868 * 11 9 7 14 14 H 1.48498 * 109.46905 * 305.00465 * 11 9 7 15 15 C 1.46904 * 110.99569 * 162.26462 * 5 4 3 16 16 C 1.50693 * 109.46779 * 189.99911 * 15 5 4 17 17 O 1.33625 * 125.80933 * 270.32222 * 16 15 5 18 18 C 1.34227 * 110.92444 * 180.13300 * 17 16 15 19 19 C 1.34159 * 109.14366 * 359.59254 * 18 17 16 20 20 C 1.36502 * 125.80782 * 90.00747 * 16 15 5 21 21 C 1.47230 * 127.19964 * 0.02889 * 20 16 15 22 22 O 1.21537 * 120.00115 * 359.97438 * 21 20 16 23 23 O 1.34774 * 120.00070 * 179.97438 * 21 20 16 24 24 H 1.09003 * 109.47060 * 64.94391 * 1 2 3 25 25 H 1.09000 * 109.47520 * 184.94498 * 1 2 3 26 26 H 1.09003 * 109.47103 * 304.94702 * 1 2 3 27 27 H 1.08999 * 109.47432 * 64.72764 * 3 2 1 28 28 H 1.08996 * 109.46798 * 304.72539 * 3 2 1 29 29 H 1.09000 * 109.46636 * 309.40017 * 4 3 2 30 30 H 1.08998 * 109.46892 * 189.40116 * 4 3 2 31 31 H 1.09005 * 109.47149 * 62.86036 * 6 5 4 32 32 H 1.09000 * 109.46631 * 182.84891 * 6 5 4 33 33 H 0.96998 * 120.00304 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.46961 * 70.00053 * 15 5 4 35 35 H 1.09001 * 109.47264 * 310.00249 * 15 5 4 36 36 H 1.07995 * 125.42770 * 179.85826 * 18 17 16 37 37 H 1.07995 * 127.02722 * 180.27846 * 19 18 17 38 38 H 0.96697 * 117.00005 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1867 -0.1190 5 7 3.8810 0.7065 -1.4625 6 6 3.5712 -0.7220 -1.6083 7 6 4.3017 -1.5053 -0.5482 8 1 4.8764 -0.9879 0.2057 9 6 4.2363 -2.8824 -0.5407 10 7 3.4566 -3.5084 -1.3950 11 14 5.2551 -3.8592 0.6830 12 1 4.7892 -3.5643 2.0619 13 1 5.1012 -5.3104 0.4083 14 1 6.6846 -3.4793 0.5517 15 6 5.2937 0.9724 -1.7650 16 6 5.5558 0.6957 -3.2229 17 8 5.9307 -0.4776 -3.7410 18 6 6.0832 -0.3874 -5.0715 19 6 5.7989 0.8639 -5.4631 20 6 5.4449 1.5995 -4.2399 21 6 5.0528 3.0147 -4.1342 22 8 4.7852 3.4917 -3.0489 23 8 4.9907 3.7812 -5.2410 24 1 -0.3633 0.4352 -0.9310 25 1 -0.3634 -1.0238 0.0886 26 1 -0.3633 0.5887 0.8424 27 1 1.7572 1.8159 0.9293 28 1 1.6232 1.8754 -0.8446 29 1 3.8996 0.4818 0.6262 30 1 3.9858 2.1630 0.0479 31 1 2.4975 -0.8741 -1.4975 32 1 3.8865 -1.0633 -2.5943 33 1 3.4103 -4.4773 -1.3895 34 1 5.9240 0.3267 -1.1536 35 1 5.5220 2.0156 -1.5463 36 1 6.3825 -1.1946 -5.7235 37 1 5.8241 1.2516 -6.4707 38 1 4.7281 4.7042 -5.1217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071226596.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:27 Heat of formation + Delta-G solvation = -106.061398 kcal Electronic energy + Delta-G solvation = -23290.694009 eV Core-core repulsion = 19714.875876 eV Total energy + Delta-G solvation = -3575.818134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20227 -39.51916 -37.74428 -36.10725 -35.66639 -32.64227 -32.30515 -30.78187 -28.74450 -26.94506 -25.78130 -24.76254 -23.62079 -22.44864 -21.30297 -20.00886 -19.21191 -17.86794 -17.08861 -16.43259 -16.15967 -15.73130 -15.40927 -15.15496 -14.96843 -14.66824 -14.24178 -13.94386 -13.73647 -13.67220 -12.83445 -12.53111 -12.35440 -12.24088 -11.66281 -11.33827 -11.23447 -11.09803 -11.04910 -10.83331 -10.67712 -10.58538 -10.25170 -10.00175 -9.80035 -9.51356 -9.48257 -8.88379 -8.31593 -8.20940 -7.15484 -5.88079 -3.92483 1.57785 2.33005 3.09220 3.36082 3.40450 3.42749 3.43112 3.52012 4.51754 4.55133 4.83162 5.07772 5.23473 5.41194 5.44093 5.67819 5.73628 5.83690 5.88599 5.94623 6.01275 6.07844 6.12180 6.19246 6.26085 6.35355 6.43570 6.61784 6.71168 6.78071 7.31299 7.47701 7.73445 7.93676 8.08399 8.11344 8.21646 8.33748 8.43478 9.13391 9.70247 11.18480 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.006939 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.890934 B = 4033.989259 C = 5339.819107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.073 3.927 4 C 0.060 3.940 5 N -0.529 5.529 6 C 0.178 3.822 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.070 3.930 10 N -0.888 5.888 11 Si 0.882 3.118 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.279 1.279 15 C 0.119 3.881 16 C 0.142 3.858 17 O -0.150 6.150 18 C -0.043 4.043 19 C -0.180 4.180 20 C -0.247 4.247 21 C 0.560 3.440 22 O -0.510 6.510 23 O -0.517 6.517 24 H 0.032 0.968 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.259 0.741 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.204 0.796 37 H 0.155 0.845 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 10.958 -5.247 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C -0.004 4.004 4 C -0.068 4.068 5 N -0.254 5.254 6 C 0.053 3.947 7 C -0.574 4.574 8 H 0.071 0.929 9 C -0.133 4.133 10 N -0.527 5.527 11 Si 0.710 3.290 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.204 1.204 15 C -0.009 4.009 16 C 0.087 3.913 17 O -0.044 6.044 18 C -0.109 4.109 19 C -0.200 4.200 20 C -0.250 4.250 21 C 0.406 3.594 22 O -0.400 6.400 23 O -0.329 6.329 24 H 0.051 0.949 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.220 0.780 37 H 0.173 0.827 38 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.461 10.302 -5.245 11.652 hybrid contribution 0.579 -0.285 0.962 1.158 sum 2.039 10.017 -4.283 11.084 Atomic orbital electron populations 1.22625 0.83305 1.01963 0.98582 1.88311 1.17547 1.26609 1.94770 1.22439 0.94382 0.85230 0.98373 1.21986 0.93623 0.99339 0.91882 1.62632 1.14520 1.22478 1.25740 1.20076 0.99008 0.79587 0.96045 1.21522 1.30751 0.91814 1.13319 0.92927 1.24831 0.95175 0.97732 0.95514 1.69947 1.37591 1.08388 1.36808 0.86829 0.80941 0.79206 0.82010 1.20498 1.21402 1.20445 1.20773 0.93361 1.01584 0.85150 1.22934 0.91202 0.81141 0.95981 1.84027 1.65609 1.32946 1.21796 1.23873 1.06190 0.99104 0.81761 1.22732 1.05378 0.93399 0.98446 1.19941 1.18505 0.92403 0.94162 1.19633 0.73185 0.85559 0.81028 1.90878 1.46515 1.74105 1.28509 1.84585 1.82429 1.27506 1.38348 0.94950 0.90236 0.95392 0.94381 0.93545 0.91820 0.91439 0.92041 0.95675 0.93142 0.91756 0.88027 0.77977 0.82688 0.73552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.56 7.96 -35.23 -0.28 -7.84 16 3 C 0.07 1.35 6.20 37.16 0.23 1.58 16 4 C 0.06 1.18 5.32 -3.82 -0.02 1.16 16 5 N -0.53 -11.64 4.65 -237.51 -1.10 -12.74 16 6 C 0.18 4.64 4.57 -4.98 -0.02 4.62 16 7 C -0.53 -14.73 7.35 -34.44 -0.25 -14.98 16 8 H 0.05 1.43 5.95 -52.49 -0.31 1.11 16 9 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 10 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 11 Si 0.88 21.78 29.54 -169.99 -5.02 16.75 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.12 2.40 4.82 -4.98 -0.02 2.38 16 16 C 0.14 2.80 5.96 -34.94 -0.21 2.60 16 17 O -0.15 -2.99 9.70 7.69 0.07 -2.92 16 18 C -0.04 -0.66 12.03 29.30 0.35 -0.31 16 19 C -0.18 -2.71 11.05 -37.44 -0.41 -3.12 16 20 C -0.25 -4.36 6.32 -103.29 -0.65 -5.01 16 21 C 0.56 9.19 8.33 34.38 0.29 9.48 16 22 O -0.51 -9.33 15.63 -19.29 -0.30 -9.63 16 23 O -0.52 -6.43 13.34 -40.69 -0.54 -6.98 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.39 5.86 -51.93 -0.30 1.08 16 30 H 0.07 1.16 7.77 -51.93 -0.40 0.76 16 31 H 0.06 1.76 5.71 -51.93 -0.30 1.46 16 32 H 0.03 0.72 6.46 -51.93 -0.34 0.38 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.06 1.36 6.86 -51.93 -0.36 1.01 16 35 H 0.10 1.89 6.19 -51.93 -0.32 1.57 16 36 H 0.20 2.25 8.06 -52.49 -0.42 1.82 16 37 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.41 3.01 9.11 45.56 0.42 3.42 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -33.89 322.90 -5.29 -39.18 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.01 Total: 3.10 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 0.29 Total: 1.93 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.37 Total: -38.47 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -1.05 Total: -27.36 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.89 -5.29 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071226596.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.882 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds