Wall clock time and date at job start Tue Mar 31 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99964 * 2 1 4 4 C 1.53004 * 109.46993 * 184.73177 * 3 2 1 5 5 N 1.46903 * 109.47111 * 69.39820 * 4 3 2 6 6 C 1.46897 * 110.99913 * 286.21599 * 5 4 3 7 7 C 1.50699 * 109.47641 * 302.85166 * 6 5 4 8 8 H 1.07995 * 119.99888 * 4.36620 * 7 6 5 9 9 C 1.37871 * 119.99981 * 184.35765 * 7 6 5 10 10 N 1.31515 * 120.00284 * 354.86313 * 9 7 6 11 11 Si 1.86804 * 119.99920 * 174.86109 * 9 7 6 12 12 H 1.48499 * 109.46951 * 65.00045 * 11 9 7 13 13 H 1.48496 * 109.46916 * 184.99868 * 11 9 7 14 14 H 1.48498 * 109.46905 * 305.00465 * 11 9 7 15 15 C 1.46904 * 110.99569 * 162.26462 * 5 4 3 16 16 C 1.50693 * 109.46779 * 189.99911 * 15 5 4 17 17 O 1.33625 * 125.80933 * 270.32222 * 16 15 5 18 18 C 1.34227 * 110.92444 * 180.13300 * 17 16 15 19 19 C 1.34159 * 109.14366 * 359.59254 * 18 17 16 20 20 C 1.36502 * 125.80782 * 90.00747 * 16 15 5 21 21 C 1.47230 * 127.19964 * 0.02889 * 20 16 15 22 22 O 1.21537 * 120.00115 * 359.97438 * 21 20 16 23 23 O 1.34774 * 120.00070 * 179.97438 * 21 20 16 24 24 H 1.09003 * 109.47060 * 64.94391 * 1 2 3 25 25 H 1.09000 * 109.47520 * 184.94498 * 1 2 3 26 26 H 1.09003 * 109.47103 * 304.94702 * 1 2 3 27 27 H 1.08999 * 109.47432 * 64.72764 * 3 2 1 28 28 H 1.08996 * 109.46798 * 304.72539 * 3 2 1 29 29 H 1.09000 * 109.46636 * 309.40017 * 4 3 2 30 30 H 1.08998 * 109.46892 * 189.40116 * 4 3 2 31 31 H 1.09005 * 109.47149 * 62.86036 * 6 5 4 32 32 H 1.09000 * 109.46631 * 182.84891 * 6 5 4 33 33 H 0.96998 * 120.00304 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.46961 * 70.00053 * 15 5 4 35 35 H 1.09001 * 109.47264 * 310.00249 * 15 5 4 36 36 H 1.07995 * 125.42770 * 179.85826 * 18 17 16 37 37 H 1.07995 * 127.02722 * 180.27846 * 19 18 17 38 38 H 0.96697 * 117.00005 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1867 -0.1190 5 7 3.8810 0.7065 -1.4625 6 6 3.5712 -0.7220 -1.6083 7 6 4.3017 -1.5053 -0.5482 8 1 4.8764 -0.9879 0.2057 9 6 4.2363 -2.8824 -0.5407 10 7 3.4566 -3.5084 -1.3950 11 14 5.2551 -3.8592 0.6830 12 1 4.7892 -3.5643 2.0619 13 1 5.1012 -5.3104 0.4083 14 1 6.6846 -3.4793 0.5517 15 6 5.2937 0.9724 -1.7650 16 6 5.5558 0.6957 -3.2229 17 8 5.9307 -0.4776 -3.7410 18 6 6.0832 -0.3874 -5.0715 19 6 5.7989 0.8639 -5.4631 20 6 5.4449 1.5995 -4.2399 21 6 5.0528 3.0147 -4.1342 22 8 4.7852 3.4917 -3.0489 23 8 4.9907 3.7812 -5.2410 24 1 -0.3633 0.4352 -0.9310 25 1 -0.3634 -1.0238 0.0886 26 1 -0.3633 0.5887 0.8424 27 1 1.7572 1.8159 0.9293 28 1 1.6232 1.8754 -0.8446 29 1 3.8996 0.4818 0.6262 30 1 3.9858 2.1630 0.0479 31 1 2.4975 -0.8741 -1.4975 32 1 3.8865 -1.0633 -2.5943 33 1 3.4103 -4.4773 -1.3895 34 1 5.9240 0.3267 -1.1536 35 1 5.5220 2.0156 -1.5463 36 1 6.3825 -1.1946 -5.7235 37 1 5.8241 1.2516 -6.4707 38 1 4.7281 4.7042 -5.1217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071226596.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:26 Heat of formation + Delta-G solvation = -131.803508 kcal Electronic energy + Delta-G solvation = -23291.810271 eV Core-core repulsion = 19714.875876 eV Total energy + Delta-G solvation = -3576.934395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.54581 -40.74315 -39.35176 -37.67625 -36.89624 -34.52227 -33.88386 -32.19634 -30.36279 -28.74224 -27.15990 -26.40853 -25.21284 -24.06131 -22.56363 -21.69777 -20.59691 -19.10826 -18.64876 -18.10675 -17.66170 -17.24229 -16.92578 -16.67031 -16.44421 -16.22268 -15.69079 -15.51931 -15.27876 -15.21284 -14.42341 -13.97474 -13.82727 -13.68361 -13.22942 -12.99485 -12.71397 -12.70296 -12.62306 -12.48841 -12.44009 -12.24610 -11.91266 -11.66254 -11.58536 -11.44694 -10.81065 -10.55258 -10.21676 -9.63427 -8.98688 -8.02930 -6.15560 0.19774 1.12795 1.38656 1.40093 1.46977 1.84693 2.14314 2.35402 2.44566 3.13972 3.24597 3.43533 3.64258 3.84947 4.22571 4.28336 4.40900 4.48446 4.50032 4.56520 4.60333 4.69009 4.73384 4.82035 4.90497 4.95210 5.01405 5.15873 5.34097 5.45966 5.59119 5.65577 5.96407 6.09906 6.20823 6.31208 6.45715 6.59375 7.00425 7.11550 7.50695 9.01378 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.006939 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.890934 B = 4033.989259 C = 5339.819107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.074 3.926 4 C 0.057 3.943 5 N -0.530 5.530 6 C 0.201 3.799 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.017 3.983 10 N -0.924 5.924 11 Si 0.945 3.055 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.126 3.874 16 C 0.101 3.899 17 O -0.184 6.184 18 C -0.046 4.046 19 C -0.174 4.174 20 C -0.248 4.248 21 C 0.564 3.436 22 O -0.534 6.534 23 O -0.502 6.502 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.035 0.965 32 H -0.005 1.005 33 H 0.259 0.741 34 H 0.045 0.955 35 H 0.116 0.884 36 H 0.241 0.759 37 H 0.190 0.810 38 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 12.226 -5.754 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C -0.003 4.003 4 C -0.071 4.071 5 N -0.254 5.254 6 C 0.075 3.925 7 C -0.574 4.574 8 H 0.071 0.929 9 C -0.182 4.182 10 N -0.564 5.564 11 Si 0.771 3.229 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.197 1.197 15 C -0.002 4.002 16 C 0.047 3.953 17 O -0.079 6.079 18 C -0.111 4.111 19 C -0.192 4.192 20 C -0.252 4.252 21 C 0.410 3.590 22 O -0.426 6.426 23 O -0.316 6.316 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.053 0.947 32 H 0.013 0.987 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.134 0.866 36 H 0.257 0.743 37 H 0.207 0.793 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 1.908 11.621 -5.760 13.109 hybrid contribution 0.424 -0.566 1.009 1.232 sum 2.332 11.055 -4.751 12.256 Atomic orbital electron populations 1.22756 0.81263 1.02429 1.00233 1.88236 1.20039 1.28390 1.95114 1.22520 0.93147 0.84538 1.00046 1.22123 0.95090 0.99904 0.89946 1.62554 1.16032 1.19677 1.27136 1.19581 0.96958 0.81934 0.93996 1.21769 1.30191 0.92183 1.13298 0.92950 1.25612 0.96305 0.98903 0.97399 1.70077 1.39172 1.08541 1.38617 0.85815 0.79554 0.77733 0.79765 1.19971 1.21015 1.19709 1.20696 0.91679 1.01812 0.85984 1.22855 0.94204 0.82018 0.96207 1.83975 1.66282 1.33554 1.24050 1.24761 1.05192 1.00698 0.80436 1.23109 1.04379 0.92754 0.98986 1.20297 1.17078 0.93096 0.94717 1.19475 0.72692 0.85406 0.81396 1.90860 1.47557 1.74533 1.29620 1.84516 1.81739 1.29127 1.36227 0.94219 0.90711 0.92430 0.91142 0.93359 0.94167 0.88616 0.94711 0.98682 0.93200 0.93721 0.86594 0.74250 0.79283 0.70723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 16 2 O -0.40 -17.13 7.96 -148.98 -1.19 -18.31 16 3 C 0.07 2.69 6.20 71.98 0.45 3.13 16 4 C 0.06 2.25 5.32 86.30 0.46 2.71 16 5 N -0.53 -23.76 4.65 -905.36 -4.21 -27.97 16 6 C 0.20 10.91 4.57 85.56 0.39 11.30 16 7 C -0.54 -30.27 7.35 25.60 0.19 -30.08 16 8 H 0.05 2.91 5.95 -2.91 -0.02 2.89 16 9 C 0.02 0.96 5.45 84.65 0.46 1.42 16 10 N -0.92 -56.43 13.29 21.45 0.29 -56.15 16 11 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 12 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 C 0.13 5.19 4.82 85.55 0.41 5.60 16 16 C 0.10 4.04 5.96 25.28 0.15 4.19 16 17 O -0.18 -7.45 9.70 4.60 0.04 -7.40 16 18 C -0.05 -1.35 12.03 66.89 0.80 -0.55 16 19 C -0.17 -4.84 11.05 23.65 0.26 -4.57 16 20 C -0.25 -8.53 6.32 -19.00 -0.12 -8.65 16 21 C 0.56 17.54 8.33 70.19 0.58 18.13 16 22 O -0.53 -18.82 15.63 19.72 0.31 -18.51 16 23 O -0.50 -10.96 13.34 -56.86 -0.76 -11.72 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.04 1.78 5.86 -2.39 -0.01 1.76 16 30 H 0.10 3.19 7.77 -2.39 -0.02 3.17 16 31 H 0.04 2.08 5.71 -2.38 -0.01 2.07 16 32 H 0.00 -0.29 6.46 -2.39 -0.02 -0.31 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.04 1.97 6.86 -2.39 -0.02 1.96 16 35 H 0.12 4.34 6.19 -2.39 -0.01 4.33 16 36 H 0.24 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.43 4.92 9.11 -74.06 -0.67 4.25 16 Total: -1.00 -75.03 322.90 2.22 -72.81 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.42 Total: 15.07 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.29 Total: 4.84 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -3.92 Total: -84.12 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -1.59 Total: -55.95 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -75.03 2.22 -72.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071226596.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.998 kcal (2) G-P(sol) polarization free energy of solvation -75.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds