Wall clock time and date at job start Tue Mar 31 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46903 * 111.00087 * 2 1 4 4 C 1.52997 * 109.47350 * 66.04552 * 3 2 1 5 5 C 1.52998 * 109.47256 * 179.97438 * 4 3 2 6 6 S 1.81001 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.76203 * 99.99884 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99961 * 0.02562 * 7 6 5 9 9 C 1.38802 * 119.99914 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99758 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99784 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47081 * 60.00696 * 11 9 7 13 13 H 1.48503 * 109.46712 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47275 * 300.00561 * 11 9 7 15 15 C 1.46897 * 110.99967 * 236.04429 * 2 1 3 16 16 C 1.50698 * 109.47421 * 293.95154 * 15 2 1 17 17 C 1.38219 * 120.00966 * 104.99560 * 16 15 2 18 18 C 1.38227 * 120.02402 * 179.72409 * 17 16 15 19 19 C 1.38263 * 120.05156 * 0.30685 * 18 17 16 20 20 C 1.38177 * 120.02526 * 359.97438 * 19 18 17 21 21 C 1.38439 * 120.01637 * 285.30265 * 16 15 2 22 22 F 1.35105 * 120.02463 * 359.97438 * 21 16 15 23 23 H 1.09003 * 109.47597 * 183.95748 * 1 2 3 24 24 H 1.09005 * 109.47436 * 303.95370 * 1 2 3 25 25 H 1.09008 * 109.47255 * 63.95685 * 1 2 3 26 26 H 1.09007 * 109.47160 * 186.04568 * 3 2 1 27 27 H 1.08996 * 109.47076 * 306.04078 * 3 2 1 28 28 H 1.09007 * 109.47002 * 300.00113 * 4 3 2 29 29 H 1.09006 * 109.47342 * 59.99759 * 4 3 2 30 30 H 1.08990 * 109.47346 * 300.00290 * 5 4 3 31 31 H 1.09004 * 109.47017 * 60.00277 * 5 4 3 32 32 H 0.97010 * 119.99648 * 179.97438 * 10 9 7 33 33 H 1.09012 * 109.47067 * 173.95513 * 15 2 1 34 34 H 1.08992 * 109.47414 * 53.95639 * 15 2 1 35 35 H 1.08002 * 119.99072 * 0.02562 * 17 16 15 36 36 H 1.07999 * 119.97012 * 180.27779 * 18 17 16 37 37 H 1.08004 * 119.99046 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.01271 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1803 3.4856 1.3185 6 16 1.7490 4.2974 2.8777 7 6 2.4819 5.8778 2.6127 8 1 3.0010 6.0841 1.6884 9 6 2.3911 6.8577 3.5915 10 7 1.7580 6.6063 4.7178 11 14 3.1687 8.5329 3.3109 12 1 2.5620 9.1658 2.1123 13 1 2.9331 9.3931 4.4982 14 1 4.6297 8.3713 3.0992 15 6 1.9953 -0.7660 -1.1375 16 6 1.6369 -2.2204 -0.9728 17 6 0.6298 -2.7754 -1.7398 18 6 0.3047 -4.1108 -1.5930 19 6 0.9819 -4.8914 -0.6745 20 6 1.9851 -4.3374 0.0975 21 6 2.3118 -2.9997 -0.0487 22 9 3.2925 -2.4568 0.7055 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3634 0.5740 0.8525 25 1 -0.3634 0.4512 -0.9234 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9273 -0.8309 28 1 0.5471 2.0845 1.4265 29 1 2.0657 1.5016 2.1492 30 1 3.2645 3.4582 1.2104 31 1 1.7463 4.0418 0.4875 32 1 1.6949 7.2911 5.4020 33 1 3.0797 -0.6611 -1.1756 34 1 1.5611 -0.3873 -2.0627 35 1 0.1001 -2.1666 -2.4576 36 1 -0.4793 -4.5447 -2.1959 37 1 0.7268 -5.9347 -0.5603 38 1 2.5142 -4.9474 0.8146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074980597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:46 Heat of formation + Delta-G solvation = -30.425894 kcal Electronic energy + Delta-G solvation = -19012.045131 eV Core-core repulsion = 15894.632459 eV Total energy + Delta-G solvation = -3117.412672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.87803 -39.51488 -37.55663 -33.43110 -32.39770 -31.32528 -30.69529 -27.40079 -26.48058 -25.45973 -23.18838 -22.98835 -21.21872 -20.53144 -17.69810 -17.43417 -16.62143 -16.14932 -15.98786 -15.39163 -15.24248 -14.77669 -14.68332 -14.28053 -14.07908 -13.86474 -13.31537 -13.05755 -12.83347 -12.56814 -12.33372 -12.04393 -11.81649 -11.64580 -11.49495 -11.25176 -11.13136 -11.02439 -10.75547 -10.60568 -10.23405 -9.52650 -9.25965 -9.02169 -8.85743 -8.34574 -8.25925 -6.48905 -6.19508 -3.89465 0.90175 0.95432 3.22618 3.25232 3.28279 3.30115 3.59494 4.03073 4.11592 4.25951 4.43411 4.49431 4.69298 4.88871 5.07312 5.13005 5.16267 5.23587 5.25963 5.36770 5.46909 5.55055 5.60845 5.69689 5.78388 5.81173 5.89450 5.92680 5.99136 6.06268 6.11360 6.12601 6.39397 6.64120 6.64758 6.79255 7.03139 7.07554 7.63176 8.39516 9.26466 10.88643 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.043591 B = 0.002640 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.186898 B =10602.912518 C =10725.727985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.535 5.535 3 C 0.061 3.939 4 C -0.093 4.093 5 C -0.112 4.112 6 S -0.132 6.132 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.070 3.930 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.094 3.906 16 C -0.113 4.113 17 C -0.087 4.087 18 C -0.135 4.135 19 C -0.093 4.093 20 C -0.160 4.160 21 C 0.126 3.874 22 F -0.128 7.128 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.024 0.976 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.267 0.733 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -21.895 -14.012 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.068 4.068 4 C -0.132 4.132 5 C -0.261 4.261 6 S 0.096 5.904 7 C -0.665 4.665 8 H 0.089 0.911 9 C -0.138 4.138 10 N -0.506 5.506 11 Si 0.745 3.255 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.199 1.199 15 C -0.034 4.034 16 C -0.114 4.114 17 C -0.105 4.105 18 C -0.154 4.154 19 C -0.111 4.111 20 C -0.179 4.179 21 C 0.106 3.894 22 F -0.107 7.107 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.795 -22.388 -12.465 25.776 hybrid contribution 1.030 2.008 -1.779 2.874 sum -1.765 -20.381 -14.244 24.927 Atomic orbital electron populations 1.22474 0.87306 1.01991 1.01018 1.61987 1.08137 1.14318 1.41440 1.22206 0.99990 0.86643 0.97936 1.21281 1.01266 0.94016 0.96644 1.23229 1.02297 0.97504 1.03107 1.84638 1.74275 1.13235 1.18248 1.22655 1.40560 0.97522 1.05715 0.91054 1.25016 0.95246 0.99016 0.94544 1.70021 1.40015 1.34411 1.06122 0.86228 0.79598 0.81915 0.77801 1.19977 1.20826 1.19939 1.20965 1.00929 0.88859 0.92629 1.19886 0.97817 0.96187 0.97528 1.20977 0.95699 0.95287 0.98579 1.21152 1.00745 0.93973 0.99481 1.20997 0.94932 1.00091 0.95115 1.21192 1.00471 0.93758 1.02457 1.17530 0.88597 0.91491 0.91809 1.91542 1.59070 1.86193 1.73855 0.91697 0.90441 0.95738 0.90790 0.94860 0.91624 0.90724 0.92131 0.92400 0.92281 0.89631 0.93569 0.85396 0.85506 0.85237 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.14 60.06 0.55 0.79 16 2 N -0.54 -6.95 4.75 -244.37 -1.16 -8.11 16 3 C 0.06 0.86 4.96 -3.82 -0.02 0.84 16 4 C -0.09 -1.60 5.15 -26.73 -0.14 -1.74 16 5 C -0.11 -2.33 5.67 37.16 0.21 -2.11 16 6 S -0.13 -3.54 21.44 -107.50 -2.30 -5.85 16 7 C -0.52 -15.07 9.50 30.94 0.29 -14.78 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 10 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 11 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.09 1.03 4.78 -4.98 -0.02 1.00 16 16 C -0.11 -1.18 4.43 -104.56 -0.46 -1.64 16 17 C -0.09 -0.72 9.12 -39.59 -0.36 -1.08 16 18 C -0.14 -0.97 10.04 -39.58 -0.40 -1.37 16 19 C -0.09 -0.68 10.04 -39.59 -0.40 -1.08 16 20 C -0.16 -1.45 10.03 -39.52 -0.40 -1.85 16 21 C 0.13 1.42 7.25 -39.42 -0.29 1.14 16 22 F -0.13 -1.73 16.76 2.25 0.04 -1.69 16 23 H 0.06 0.72 6.88 -51.93 -0.36 0.36 16 24 H 0.08 0.98 6.30 -51.93 -0.33 0.66 16 25 H 0.02 0.26 8.14 -51.92 -0.42 -0.16 16 26 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 27 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.07 1.12 6.47 -51.93 -0.34 0.79 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 31 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.09 0.95 7.88 -51.92 -0.41 0.54 16 34 H 0.05 0.45 7.93 -51.93 -0.41 0.03 16 35 H 0.13 0.85 8.00 -52.49 -0.42 0.43 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -32.12 335.02 -9.79 -41.91 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.60 Total: -2.50 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.52 Total: -19.94 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: -0.43 Total: -33.78 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.12 -9.79 -41.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.486 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds