Wall clock time and date at job start Tue Mar 31 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.47113 * 2 1 4 4 N 1.46501 * 109.47004 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99603 * 264.74801 * 4 3 2 6 6 H 1.07997 * 119.99720 * 146.17101 * 5 4 3 7 7 C 1.38945 * 120.00020 * 326.17111 * 5 4 3 8 8 N 1.31409 * 120.00472 * 337.67575 * 7 5 4 9 9 Si 1.86807 * 119.99621 * 157.67731 * 7 5 4 10 10 H 1.48498 * 109.47453 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47121 * 120.00017 * 9 7 5 12 12 H 1.48501 * 109.46760 * 239.99608 * 9 7 5 13 13 C 1.34768 * 120.00357 * 84.74969 * 4 3 2 14 14 O 1.21291 * 120.00543 * 179.97438 * 13 4 3 15 15 C 1.50708 * 119.99632 * 359.97438 * 13 4 3 16 16 C 1.50701 * 109.46835 * 179.97438 * 15 13 4 17 17 C 1.38212 * 120.00163 * 264.72459 * 16 15 13 18 18 C 1.38425 * 120.00335 * 179.77260 * 17 16 15 19 19 F 1.35093 * 120.00548 * 180.27084 * 18 17 16 20 20 C 1.38476 * 119.99675 * 0.52468 * 18 17 16 21 21 C 1.38159 * 120.00061 * 359.72802 * 20 18 17 22 22 C 1.38431 * 120.00350 * 85.00211 * 16 15 13 23 23 F 1.35101 * 119.99670 * 359.97438 * 22 16 15 24 24 H 1.08999 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46871 * 299.99881 * 1 2 3 26 26 H 1.08999 * 109.47270 * 59.99622 * 1 2 3 27 27 H 1.08997 * 109.47251 * 240.00374 * 2 1 3 28 28 H 1.08994 * 109.47876 * 120.00044 * 2 1 3 29 29 H 1.08997 * 109.46757 * 60.00072 * 3 2 1 30 30 H 1.09001 * 109.46841 * 300.00318 * 3 2 1 31 31 H 0.96993 * 120.00218 * 180.02562 * 8 7 5 32 32 H 1.08992 * 109.47305 * 299.99893 * 15 13 4 33 33 H 1.08998 * 109.47298 * 60.00361 * 15 13 4 34 34 H 1.08004 * 119.99454 * 0.02562 * 17 16 15 35 35 H 1.07995 * 120.00140 * 179.70078 * 20 18 17 36 36 H 1.08003 * 120.00127 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5511 1.1815 6 1 5.1338 1.0398 1.3075 7 6 3.6730 2.3188 2.2173 8 7 2.8017 3.2682 1.9595 9 14 4.2154 2.0015 3.9765 10 1 5.1959 0.8864 3.9988 11 1 4.8462 3.2271 4.5287 12 1 3.0346 1.6383 4.8006 13 6 4.1784 1.3359 -1.1631 14 8 5.3913 1.3364 -1.1637 15 6 3.4243 1.2161 -2.4624 16 6 4.4032 1.1122 -3.6035 17 6 4.7675 2.2449 -4.3069 18 6 5.6702 2.1502 -5.3520 19 9 6.0305 3.2581 -6.0360 20 6 6.2000 0.9190 -5.6998 21 6 5.8319 -0.2140 -5.0001 22 6 4.9332 -0.1185 -3.9510 23 9 4.5733 -1.2264 -3.2668 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 2.4405 3.8043 2.6825 32 1 2.7981 0.3244 -2.4382 33 1 2.7973 2.0969 -2.6012 34 1 4.3509 3.2044 -4.0384 35 1 6.9006 0.8443 -6.5183 36 1 6.2448 -1.1744 -5.2716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079686984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:34 Heat of formation + Delta-G solvation = -105.042432 kcal Electronic energy + Delta-G solvation = -22348.374317 eV Core-core repulsion = 18661.512853 eV Total energy + Delta-G solvation = -3686.861463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.81012 -48.65735 -39.22009 -38.08917 -35.29709 -33.04606 -32.36453 -31.20531 -29.99461 -27.73274 -25.78099 -24.38534 -22.87083 -21.91616 -20.96427 -19.01965 -17.42086 -17.04031 -16.96580 -16.88325 -16.17968 -15.55607 -15.11906 -14.80275 -14.45011 -14.33407 -14.05634 -14.01046 -13.79093 -13.30487 -12.97344 -12.66495 -12.58770 -12.32394 -11.76009 -11.65993 -11.56339 -11.43726 -11.13505 -11.03321 -10.83450 -10.61973 -10.32078 -10.25292 -9.94081 -9.05460 -8.96911 -8.48196 -8.26699 -7.50888 -6.35463 -3.95949 1.11813 1.17771 3.14141 3.25616 3.32230 3.48611 3.86239 4.13840 4.27186 4.39176 4.63007 4.79237 4.89367 5.01431 5.11229 5.28578 5.53164 5.59637 5.69664 5.74756 5.76110 5.95613 6.02698 6.07145 6.09694 6.19092 6.26241 6.35350 6.40362 6.47182 6.60447 6.89681 6.94720 7.26617 7.58433 8.21976 8.48655 9.16481 9.38937 9.98043 10.68173 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.005057 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.274459 B = 5535.981254 C = 6045.829495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.099 3.901 4 N -0.439 5.439 5 C -0.305 4.305 6 H 0.093 0.907 7 C 0.035 3.965 8 N -0.869 5.869 9 Si 0.916 3.084 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.461 3.539 14 O -0.576 6.576 15 C -0.105 4.105 16 C -0.048 4.048 17 C -0.115 4.115 18 C 0.087 3.913 19 F -0.140 7.140 20 C -0.136 4.136 21 C -0.127 4.127 22 C 0.103 3.897 23 F -0.132 7.132 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.047 0.953 31 H 0.267 0.733 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 -4.694 -11.388 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.025 4.025 4 N -0.157 5.157 5 C -0.433 4.433 6 H 0.110 0.890 7 C -0.168 4.168 8 N -0.507 5.507 9 Si 0.743 3.257 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.249 3.751 14 O -0.459 6.459 15 C -0.145 4.145 16 C -0.050 4.050 17 C -0.134 4.134 18 C 0.067 3.933 19 F -0.118 7.118 20 C -0.154 4.154 21 C -0.146 4.146 22 C 0.083 3.917 23 F -0.111 7.111 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.133 0.867 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.135 -4.545 -11.247 12.318 hybrid contribution 0.086 -0.008 0.902 0.906 sum -2.049 -4.553 -10.346 11.488 Atomic orbital electron populations 1.21675 0.96283 1.00718 1.01568 1.21985 0.94938 0.99278 1.01790 1.21711 0.81959 0.94575 1.04246 1.43495 1.04642 1.62844 1.04726 1.19506 1.06803 1.28347 0.88608 0.88971 1.25319 0.97303 0.93693 1.00515 1.69920 1.31041 1.16952 1.32816 0.86034 0.78649 0.78664 0.82398 1.19170 1.20771 1.20557 1.19982 0.88001 0.82892 0.84239 1.90546 1.13871 1.54894 1.86632 1.20749 0.97084 1.04484 0.92155 1.19381 0.98211 0.91230 0.96134 1.20881 0.98219 0.99429 0.94898 1.17571 0.98761 0.82895 0.94034 1.91486 1.90609 1.51355 1.78398 1.20839 1.02031 0.90613 1.01956 1.20870 0.98252 0.99751 0.95711 1.17481 0.98209 0.82816 0.93171 1.91498 1.90293 1.50721 1.78555 0.93421 0.92716 0.93156 0.93163 0.91657 0.86684 0.93458 0.92264 0.88685 0.88442 0.83917 0.84163 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.14 -2.52 6.17 -26.73 -0.16 -2.68 16 3 C 0.10 2.10 4.72 -4.04 -0.02 2.08 16 4 N -0.44 -10.96 2.56 -114.81 -0.29 -11.26 16 5 C -0.30 -8.41 8.98 -14.93 -0.13 -8.54 16 6 H 0.09 2.70 7.70 -52.49 -0.40 2.29 16 7 C 0.04 0.93 4.92 -17.47 -0.09 0.84 16 8 N -0.87 -23.01 11.33 55.50 0.63 -22.38 16 9 Si 0.92 20.48 29.61 -169.99 -5.03 15.45 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.46 11.18 7.59 -10.99 -0.08 11.10 16 14 O -0.58 -16.12 15.86 5.55 0.09 -16.03 16 15 C -0.10 -1.92 4.21 -29.03 -0.12 -2.04 16 16 C -0.05 -0.83 4.38 -104.56 -0.46 -1.29 16 17 C -0.12 -1.83 9.66 -39.52 -0.38 -2.21 16 18 C 0.09 1.26 7.30 -39.42 -0.29 0.97 16 19 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 20 C -0.14 -1.72 10.02 -39.52 -0.40 -2.11 16 21 C -0.13 -1.70 10.02 -39.52 -0.40 -2.09 16 22 C 0.10 1.70 7.24 -39.42 -0.29 1.42 16 23 F -0.13 -2.32 16.57 2.25 0.04 -2.29 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.86 6.59 -51.93 -0.34 0.52 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.12 2.70 5.34 -51.93 -0.28 2.42 16 30 H 0.05 0.90 6.66 -51.93 -0.35 0.56 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.09 1.60 6.18 -51.93 -0.32 1.27 16 33 H 0.10 1.59 7.32 -51.93 -0.38 1.21 16 34 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 35 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -30.95 314.47 -6.41 -37.35 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.17 Total: 2.65 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.45 Total: -6.27 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.34 Total: -33.64 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.09 Total: -16.03 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.08 Total: -4.25 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.95 -6.41 -37.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079686984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.691 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds