Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31320 * 1 3 3 Si 1.86802 * 119.99642 * 2 1 4 4 H 1.48501 * 109.46959 * 269.99985 * 3 2 1 5 5 H 1.48500 * 109.47383 * 29.99722 * 3 2 1 6 6 H 1.48501 * 109.47174 * 149.99964 * 3 2 1 7 7 C 1.39117 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00470 * 190.96469 * 7 2 1 9 9 N 1.36715 * 119.99930 * 10.96580 * 7 2 1 10 10 C 1.34774 * 120.00393 * 214.27147 * 9 7 2 11 11 O 1.21756 * 120.00132 * 174.92998 * 10 9 7 12 12 C 1.43202 * 119.99833 * 354.94270 * 10 9 7 13 13 C 4.72672 * 122.85265 * 151.64599 * 2 1 3 14 14 C 5.78474 * 130.29344 * 142.24327 * 2 1 3 15 15 C 1.39884 * 120.16940 * 145.46305 * 14 13 12 16 16 C 1.37879 * 119.81488 * 179.76804 * 15 14 13 17 17 C 1.38407 * 120.17845 * 0.50753 * 16 15 14 18 18 C 1.38412 * 120.35347 * 359.74074 * 17 16 15 19 19 C 1.37879 * 120.17493 * 0.02562 * 18 17 16 20 20 C 1.46513 * 119.99871 * 34.27316 * 9 7 2 21 21 C 1.54268 * 110.03096 * 243.60982 * 20 9 7 22 22 C 1.54966 * 104.15600 * 217.13725 * 21 20 9 23 23 C 1.54889 * 102.77940 * 37.88552 * 22 21 20 24 24 C 1.53869 * 110.02932 * 126.39082 * 20 9 7 25 25 H 0.97001 * 120.00396 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.08865 * 0.02562 * 15 14 13 27 27 H 1.07999 * 119.90750 * 180.27001 * 16 15 14 28 28 H 1.08003 * 119.82637 * 179.72729 * 17 16 15 29 29 H 1.07994 * 119.91228 * 180.02562 * 18 17 16 30 30 H 1.07993 * 120.08962 * 179.97438 * 19 18 17 31 31 H 1.09002 * 110.01190 * 4.99975 * 20 9 7 32 32 H 1.09001 * 110.48462 * 335.78483 * 21 20 9 33 33 H 1.09001 * 110.48367 * 98.42571 * 21 20 9 34 34 H 1.09002 * 110.71859 * 279.57386 * 22 21 20 35 35 H 1.08995 * 110.92253 * 156.30020 * 22 21 20 36 36 H 1.08997 * 110.48666 * 203.40406 * 23 22 21 37 37 H 1.09005 * 110.59210 * 80.81994 * 23 22 21 38 38 H 1.09000 * 110.03111 * 238.57132 * 24 20 9 39 39 H 1.09000 * 110.03763 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 2.4946 2.0465 -1.4001 5 1 1.4445 2.6528 0.7000 6 1 3.5447 1.4403 0.7000 7 6 2.0089 -1.2047 0.0005 8 1 3.0740 -1.2132 0.1784 9 7 1.3441 -2.3781 -0.2242 10 6 1.7358 -3.5052 0.4023 11 8 1.0890 -4.5289 0.2746 12 6 2.9126 -3.4989 1.2183 13 6 3.8773 -3.4944 1.8858 14 6 5.0542 -3.4884 2.7017 15 6 6.0175 -2.4873 2.5387 16 6 7.1456 -2.4858 3.3315 17 6 7.3312 -3.4773 4.2793 18 6 6.3851 -4.4743 4.4431 19 6 5.2494 -4.4871 3.6614 20 6 0.2058 -2.4101 -1.1460 21 6 -1.0816 -2.7847 -0.3831 22 6 -1.8661 -3.6766 -1.3784 23 6 -0.7441 -4.5006 -2.0577 24 6 0.4203 -3.5003 -2.2105 25 1 -0.4851 0.8400 0.0004 26 1 5.8760 -1.7153 1.7969 27 1 7.8882 -1.7111 3.2100 28 1 8.2190 -3.4731 4.8942 29 1 6.5370 -5.2441 5.1850 30 1 4.5123 -5.2658 3.7901 31 1 0.0865 -1.4384 -1.6254 32 1 -0.8403 -3.3434 0.5211 33 1 -1.6541 -1.8899 -0.1385 34 1 -2.3938 -3.0654 -2.1106 35 1 -2.5605 -4.3306 -0.8511 36 1 -1.0710 -4.8577 -3.0343 37 1 -0.4474 -5.3379 -1.4261 38 1 0.4042 -3.0579 -3.2065 39 1 1.3714 -4.0052 -2.0416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080670087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = 39.923046 kcal Electronic energy + Delta-G solvation = -21381.130749 eV Core-core repulsion = 18254.784990 eV Total energy + Delta-G solvation = -3126.345759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.20141 -38.93437 -36.06988 -34.41383 -33.34352 -31.51686 -30.88588 -29.97104 -27.72470 -27.12373 -25.02094 -23.43030 -22.38848 -21.45268 -19.81501 -19.09662 -18.63322 -17.30846 -15.87409 -15.67369 -14.97253 -14.85758 -14.63047 -14.48647 -13.83777 -13.78518 -13.42326 -13.37475 -12.91518 -12.84521 -12.34133 -11.78060 -11.40621 -11.33022 -11.22061 -11.18204 -10.88196 -10.52607 -10.41248 -10.34018 -10.19184 -10.11460 -9.95067 -9.71586 -9.67702 -8.96694 -8.91126 -8.68045 -8.27526 -7.65495 -6.49375 -4.13198 1.01831 1.46323 2.73049 3.10528 3.14007 3.16276 3.20158 3.92982 3.99899 4.33636 4.65990 4.98216 5.01879 5.02678 5.08773 5.20805 5.48680 5.60567 5.61994 5.64217 5.75590 5.92731 6.09551 6.25862 6.28389 6.44533 6.51645 6.52885 6.55342 6.64535 6.67015 6.68033 6.75288 6.78273 6.97039 7.03132 7.20726 7.29124 7.42113 7.51919 7.78224 8.02926 8.32618 8.93669 9.35753 9.78552 10.54079 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.005285 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.322045 B = 5296.492012 C = 6836.391057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.045 3.955 3 Si 0.921 3.079 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.340 4.340 8 H 0.093 0.907 9 N -0.409 5.409 10 C 0.552 3.448 11 O -0.581 6.581 12 C -0.101 4.101 13 C -0.143 4.143 14 C 0.035 3.965 15 C -0.096 4.096 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.100 4.100 20 C 0.168 3.832 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.131 4.131 25 H 0.272 0.728 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 -2.615 2.923 8.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.162 4.162 3 Si 0.747 3.253 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 N -0.124 5.124 10 C 0.342 3.658 11 O -0.469 6.469 12 C -0.104 4.104 13 C -0.146 4.146 14 C 0.035 3.965 15 C -0.114 4.114 16 C -0.139 4.139 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.118 4.118 20 C 0.065 3.935 21 C -0.148 4.148 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.169 4.169 25 H 0.083 0.917 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.015 -2.915 2.802 8.097 hybrid contribution 0.489 1.035 0.083 1.148 sum 7.504 -1.880 2.885 8.256 Atomic orbital electron populations 1.69889 1.06005 1.27979 1.45242 1.25424 0.95429 0.99853 0.95474 0.86009 0.79601 0.81035 0.78609 1.20059 1.20658 1.19242 1.19570 0.93192 0.83355 1.50710 0.88967 1.43538 1.27403 1.06666 1.34806 1.14979 0.83464 0.85598 0.81766 1.90717 1.56427 1.33489 1.66227 1.21320 0.94632 0.96838 0.97603 1.19012 0.94042 1.03742 0.97844 1.16065 0.90209 0.95756 0.94455 1.21386 0.93098 0.97671 0.99242 1.21050 0.97602 0.98981 0.96238 1.21225 0.99193 0.95021 0.98529 1.21026 0.94220 0.99043 0.99692 1.21348 0.97722 0.97850 0.94906 1.21498 0.85056 0.98483 0.88496 1.22472 0.95644 0.98610 0.98106 1.22443 0.97123 0.98022 0.98421 1.22223 0.95301 0.98647 0.98832 1.22503 0.99233 0.97139 0.98060 0.91738 0.85282 0.85751 0.86121 0.85823 0.85564 0.87865 0.91589 0.90861 0.92719 0.92825 0.93656 0.90876 0.93097 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.60 10.21 55.50 0.57 -21.03 16 2 C 0.05 1.12 5.00 -17.44 -0.09 1.03 16 3 Si 0.92 19.21 29.57 -169.99 -5.03 14.18 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.34 -8.70 8.81 -15.05 -0.13 -8.84 16 8 H 0.09 2.33 7.17 -52.49 -0.38 1.95 16 9 N -0.41 -10.39 2.53 -109.23 -0.28 -10.66 16 10 C 0.55 14.13 6.28 -14.33 -0.09 14.04 16 11 O -0.58 -15.35 13.05 5.14 0.07 -15.28 16 12 C -0.10 -2.40 11.95 -38.84 -0.46 -2.86 16 13 C -0.14 -3.00 13.24 -38.84 -0.51 -3.51 16 14 C 0.04 0.60 5.75 -106.74 -0.61 -0.01 16 15 C -0.10 -1.44 9.77 -39.10 -0.38 -1.82 16 16 C -0.12 -1.45 10.03 -39.65 -0.40 -1.85 16 17 C -0.12 -1.34 10.04 -39.45 -0.40 -1.73 16 18 C -0.12 -1.42 10.03 -39.65 -0.40 -1.82 16 19 C -0.10 -1.45 9.77 -39.10 -0.38 -1.83 16 20 C 0.17 3.94 2.27 -66.81 -0.15 3.79 16 21 C -0.11 -2.48 5.76 -25.03 -0.14 -2.63 16 22 C -0.12 -2.30 6.91 -24.70 -0.17 -2.47 16 23 C -0.11 -2.14 6.39 -25.07 -0.16 -2.30 16 24 C -0.13 -2.75 5.75 -25.62 -0.15 -2.89 16 25 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 26 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 27 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.10 2.55 6.22 -51.93 -0.32 2.23 16 32 H 0.07 1.65 6.46 -51.93 -0.34 1.31 16 33 H 0.07 1.70 7.40 -51.93 -0.38 1.31 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.51 7.21 -51.93 -0.37 1.14 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.40 6.80 -51.93 -0.35 1.04 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -28.17 326.86 -9.46 -37.63 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.09 Total: 5.96 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -4.63 Total: -15.71 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.29 Total: -31.70 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.07 Total: -15.28 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.17 -9.46 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080670087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.551 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds