Wall clock time and date at job start Tue Mar 31 2020 05:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46798 * 2 1 4 4 N 1.46511 * 109.46898 * 180.02562 * 3 2 1 5 5 C 1.37092 * 119.99559 * 270.27705 * 4 3 2 6 6 H 1.08001 * 119.99882 * 138.45594 * 5 4 3 7 7 C 1.38949 * 120.00227 * 318.44810 * 5 4 3 8 8 N 1.31414 * 120.00082 * 352.50385 * 7 5 4 9 9 Si 1.86804 * 120.00257 * 172.50434 * 7 5 4 10 10 H 1.48507 * 109.46904 * 59.99665 * 9 7 5 11 11 H 1.48495 * 109.47273 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46765 * 300.00220 * 9 7 5 13 13 C 1.34773 * 119.99852 * 90.00047 * 4 3 2 14 14 O 1.21293 * 120.00091 * 355.57695 * 13 4 3 15 15 C 1.50702 * 119.99501 * 175.57311 * 13 4 3 16 16 C 1.50707 * 109.46836 * 185.27518 * 15 13 4 17 17 C 1.38254 * 119.99940 * 264.72679 * 16 15 13 18 18 C 1.38222 * 120.06344 * 179.76770 * 17 16 15 19 19 C 1.38254 * 120.07395 * 0.51033 * 18 17 16 20 20 C 1.38362 * 119.99823 * 359.74219 * 19 18 17 21 21 F 1.35102 * 120.03711 * 179.97438 * 20 19 18 22 22 C 1.38370 * 119.99461 * 85.00060 * 16 15 13 23 23 F 1.35096 * 120.04204 * 0.02562 * 22 16 15 24 24 H 1.09001 * 109.47615 * 59.99977 * 1 2 3 25 25 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47065 * 299.99597 * 1 2 3 27 27 H 1.09000 * 109.47065 * 240.00403 * 2 1 3 28 28 H 1.08994 * 109.47270 * 120.00199 * 2 1 3 29 29 H 1.08993 * 109.47358 * 60.00299 * 3 2 1 30 30 H 1.09000 * 109.47499 * 299.99732 * 3 2 1 31 31 H 0.97005 * 120.00092 * 185.00448 * 8 7 5 32 32 H 1.08996 * 109.47563 * 305.27559 * 15 13 4 33 33 H 1.09001 * 109.47041 * 65.28560 * 15 13 4 34 34 H 1.08001 * 119.96701 * 0.02562 * 17 16 15 35 35 H 1.08005 * 119.95847 * 180.25002 * 18 17 16 36 36 H 1.08004 * 119.99787 * 179.76827 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.4366 1.1864 6 1 5.0672 0.8158 1.3006 7 6 3.7588 2.2295 2.2425 8 7 2.7852 3.0932 2.0602 9 14 4.5617 2.0678 3.9214 10 1 6.0098 2.3774 3.8094 11 1 3.9247 3.0179 4.8683 12 1 4.3894 0.6800 4.4208 13 6 4.1784 1.4427 -1.1681 14 8 3.5742 1.3619 -2.2167 15 6 5.6820 1.5435 -1.1706 16 6 6.1757 1.6530 -2.5902 17 6 6.5854 0.5203 -3.2689 18 6 7.0340 0.6184 -4.5726 19 6 7.0839 1.8509 -5.1972 20 6 6.6795 2.9870 -4.5189 21 9 6.7284 4.1918 -5.1282 22 6 6.2243 2.8879 -3.2124 23 9 5.8299 3.9960 -2.5479 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 2.5323 3.6972 2.7759 32 1 5.9879 2.4270 -0.6104 33 1 6.1065 0.6535 -0.7060 34 1 6.5510 -0.4428 -2.7813 35 1 7.3498 -0.2681 -5.1026 36 1 7.4381 1.9267 -6.2146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085208367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:36 Heat of formation + Delta-G solvation = -108.950766 kcal Electronic energy + Delta-G solvation = -22387.645849 eV Core-core repulsion = 18700.614908 eV Total energy + Delta-G solvation = -3687.030942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.13886 -48.19228 -39.19298 -38.10034 -35.13200 -32.92858 -32.23082 -31.22146 -30.06491 -27.63104 -25.68118 -24.32993 -22.57572 -22.02032 -20.58119 -19.16563 -17.66584 -16.99417 -16.97797 -16.48999 -16.04689 -15.75230 -14.79062 -14.64350 -14.59056 -14.31803 -14.14117 -13.87134 -13.79274 -13.19620 -12.82708 -12.69834 -12.36567 -11.88217 -11.78593 -11.57286 -11.46218 -11.27626 -11.01015 -10.98646 -10.81424 -10.69723 -10.38866 -10.24681 -9.71527 -9.13369 -8.80297 -8.48420 -8.34741 -7.46715 -6.34555 -4.19353 1.18005 1.23185 3.09444 3.17237 3.17927 3.56782 3.85938 4.04606 4.08403 4.61000 4.69575 4.88593 4.94232 4.98925 5.24446 5.26838 5.79971 5.83104 5.87558 5.90658 6.00062 6.03856 6.20721 6.26804 6.30123 6.40292 6.55699 6.57923 6.60583 6.74435 6.87101 6.99921 7.17424 7.30988 7.60521 7.97705 8.36119 9.03563 9.47187 9.91192 10.63383 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017635 B = 0.005413 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.347270 B = 5171.075574 C = 5849.090728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.107 3.893 4 N -0.437 5.437 5 C -0.339 4.339 6 H 0.087 0.913 7 C 0.046 3.954 8 N -0.867 5.867 9 Si 0.919 3.081 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.476 3.524 14 O -0.600 6.600 15 C -0.089 4.089 16 C -0.051 4.051 17 C -0.093 4.093 18 C -0.104 4.104 19 C -0.139 4.139 20 C 0.061 3.939 21 F -0.135 7.135 22 C 0.081 3.919 23 F -0.124 7.124 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.049 0.951 31 H 0.272 0.728 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 -4.508 -6.399 10.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.016 4.016 4 N -0.155 5.155 5 C -0.467 4.467 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.504 5.504 9 Si 0.745 3.255 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.265 3.735 14 O -0.486 6.486 15 C -0.129 4.129 16 C -0.052 4.052 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.158 4.158 20 C 0.041 3.959 21 F -0.113 7.113 22 C 0.060 3.940 23 F -0.102 7.102 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.131 -4.333 -6.734 10.085 hybrid contribution 0.280 0.461 0.965 1.106 sum 6.411 -3.872 -5.769 9.454 Atomic orbital electron populations 1.21652 0.96715 1.00290 1.01372 1.21812 0.94604 0.99649 1.01002 1.21657 0.81340 0.94555 1.04026 1.43388 1.04861 1.63063 1.04171 1.19403 1.12327 1.25638 0.89330 0.89550 1.25499 0.95998 0.94384 1.00122 1.69643 1.27508 1.19090 1.34116 0.86126 0.79427 0.78350 0.81556 1.19660 1.20792 1.19741 1.20134 0.88411 0.80768 0.84226 1.90550 1.70207 1.55987 1.31845 1.20450 0.95930 1.05330 0.91156 1.19665 0.97201 0.90938 0.97395 1.20984 0.97826 0.97884 0.94389 1.20955 0.99597 0.96868 0.94754 1.20925 1.02942 0.91097 1.00824 1.17648 1.05662 0.81857 0.90703 1.91491 1.94538 1.42637 1.82683 1.17535 1.02429 0.84126 0.89881 1.91535 1.88372 1.50355 1.79924 0.93252 0.93771 0.92943 0.93271 0.92416 0.86427 0.93277 0.91743 0.87843 0.88468 0.84609 0.84654 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 37.16 0.37 -2.10 16 2 C -0.13 -2.75 6.26 -26.73 -0.17 -2.92 16 3 C 0.11 2.61 4.96 -4.04 -0.02 2.59 16 4 N -0.44 -10.93 2.52 -114.81 -0.29 -11.22 16 5 C -0.34 -8.33 8.48 -14.94 -0.13 -8.46 16 6 H 0.09 1.98 7.32 -52.49 -0.38 1.60 16 7 C 0.05 1.12 5.24 -17.47 -0.09 1.03 16 8 N -0.87 -22.58 10.93 55.50 0.61 -21.98 16 9 Si 0.92 18.95 29.56 -169.99 -5.03 13.92 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 13 C 0.48 11.53 7.61 -10.99 -0.08 11.44 16 14 O -0.60 -15.87 15.67 5.55 0.09 -15.78 16 15 C -0.09 -1.76 4.35 -29.03 -0.13 -1.88 16 16 C -0.05 -0.91 4.38 -104.56 -0.46 -1.37 16 17 C -0.09 -1.34 9.68 -39.58 -0.38 -1.72 16 18 C -0.10 -1.26 10.04 -39.58 -0.40 -1.65 16 19 C -0.14 -1.81 10.02 -39.53 -0.40 -2.20 16 20 C 0.06 1.01 7.31 -39.37 -0.29 0.72 16 21 F -0.13 -2.25 17.18 2.25 0.04 -2.22 16 22 C 0.08 1.52 7.25 -39.36 -0.29 1.24 16 23 F -0.12 -2.61 16.48 2.25 0.04 -2.57 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.12 3.02 5.26 -51.93 -0.27 2.75 16 30 H 0.05 1.25 7.49 -51.93 -0.39 0.86 16 31 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 32 H 0.10 2.11 7.67 -51.93 -0.40 1.71 16 33 H 0.10 1.66 7.76 -51.93 -0.40 1.26 16 34 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -29.44 317.86 -6.57 -36.01 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.36 Total: 4.32 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.46 Total: -5.29 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.32 Total: -33.20 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.08 Total: -4.78 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.44 -6.57 -36.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085208367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.939 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds