Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47020 * 2 1 4 4 C 1.50704 * 109.46930 * 119.99481 * 2 1 3 5 5 H 1.08000 * 119.99846 * 120.00231 * 4 2 1 6 6 C 1.37878 * 119.99764 * 299.99817 * 4 2 1 7 7 N 1.31507 * 120.00355 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99700 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47012 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47022 * 120.00211 * 8 6 4 11 11 H 1.48504 * 109.46886 * 240.00455 * 8 6 4 12 12 N 1.46494 * 109.47609 * 239.99280 * 2 1 3 13 13 C 1.46497 * 120.00337 * 300.00317 * 12 2 1 14 14 C 1.34786 * 120.00150 * 119.99790 * 12 2 1 15 15 O 1.21279 * 119.99559 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00033 * 180.02562 * 14 12 2 17 17 C 1.50699 * 109.46749 * 180.02562 * 16 14 12 18 18 C 1.38256 * 120.00149 * 100.00355 * 17 16 14 19 19 C 1.38215 * 120.06983 * 179.97438 * 18 17 16 20 20 C 1.38256 * 120.07338 * 359.97438 * 19 18 17 21 21 C 1.38370 * 119.99591 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.02908 * 180.02562 * 21 20 19 23 23 C 1.38374 * 120.00034 * 279.97338 * 17 16 14 24 24 F 1.35106 * 120.03513 * 0.02562 * 23 17 16 25 25 H 1.08997 * 109.47260 * 300.00389 * 1 2 3 26 26 H 1.09002 * 109.46714 * 60.00902 * 1 2 3 27 27 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 28 28 H 0.97002 * 120.00356 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46994 * 269.99782 * 13 12 2 30 30 H 1.09003 * 109.46883 * 29.99765 * 13 12 2 31 31 H 1.08997 * 109.47600 * 149.99339 * 13 12 2 32 32 H 1.09000 * 109.46832 * 60.00655 * 16 14 12 33 33 H 1.08995 * 109.46982 * 299.99875 * 16 14 12 34 34 H 1.07997 * 119.95889 * 0.24792 * 18 17 16 35 35 H 1.08000 * 119.96228 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.99981 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3224 -1.1192 4.0081 9 1 3.1472 -2.2860 3.6041 10 1 3.1471 -0.1853 4.8161 11 1 1.1676 -1.5862 4.8167 12 7 2.0184 -0.6907 -1.1960 13 6 1.6646 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0833 15 8 3.0866 1.1253 -1.8912 16 6 3.2953 -0.7462 -3.3139 17 6 4.1331 0.2008 -4.1339 18 6 5.5126 0.1439 -4.0606 19 6 6.2823 1.0114 -4.8125 20 6 5.6746 1.9376 -5.6397 21 6 4.2942 1.9970 -5.7152 22 9 3.6997 2.9014 -6.5238 23 6 3.5218 1.1269 -4.9606 24 9 2.1738 1.1831 -5.0328 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7081 1.1612 3.4843 29 1 2.4159 -2.7377 -0.9714 30 1 0.6905 -2.3003 -0.9845 31 1 1.6239 -2.2854 -2.4999 32 1 2.4473 -1.0883 -3.9072 33 1 3.9007 -1.6027 -3.0174 34 1 5.9891 -0.5821 -3.4186 35 1 7.3598 0.9652 -4.7542 36 1 6.2772 2.6146 -6.2270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085208377.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = -99.624124 kcal Electronic energy + Delta-G solvation = -22229.813293 eV Core-core repulsion = 18543.186785 eV Total energy + Delta-G solvation = -3686.626508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.38044 -48.45447 -39.61122 -38.43343 -35.36058 -33.14154 -32.51573 -30.31563 -29.64932 -27.44541 -26.09984 -25.20677 -22.84097 -22.68353 -20.86861 -18.43196 -17.78596 -17.27840 -16.88387 -16.71497 -16.29591 -15.98487 -15.25047 -14.88593 -14.81873 -14.77877 -14.34898 -14.21000 -13.45695 -13.14689 -12.92391 -12.57612 -12.55122 -12.09706 -12.03423 -11.72897 -11.57195 -11.46826 -11.19953 -11.06313 -10.81073 -10.69324 -10.24618 -10.17825 -9.26287 -9.12253 -8.76165 -8.71332 -8.43555 -7.60478 -6.07714 -4.15953 0.93498 0.95287 3.25009 3.27505 3.32097 3.34185 3.37221 3.80317 3.98130 4.36494 4.39264 4.46383 4.65063 4.91454 5.01482 5.16697 5.24231 5.34837 5.47033 5.61922 5.75858 5.81657 5.92854 6.02527 6.07517 6.21739 6.27353 6.72299 6.77026 6.82899 7.05780 7.41910 7.51559 7.70971 8.01113 8.18862 8.50766 8.82371 9.02589 9.50648 10.97638 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026771 B = 0.004219 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.662451 B = 6634.281902 C = 6878.645097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.592 5.592 13 C 0.085 3.915 14 C 0.506 3.494 15 O -0.545 6.545 16 C -0.106 4.106 17 C -0.063 4.063 18 C -0.091 4.091 19 C -0.101 4.101 20 C -0.132 4.132 21 C 0.064 3.936 22 F -0.132 7.132 23 C 0.085 3.915 24 F -0.125 7.125 25 H 0.094 0.906 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -4.542 -15.350 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.323 5.323 13 C -0.059 4.059 14 C 0.292 3.708 15 O -0.424 6.424 16 C -0.146 4.146 17 C -0.064 4.064 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.151 4.151 21 C 0.044 3.956 22 F -0.111 7.111 23 C 0.065 3.935 24 F -0.103 7.103 25 H 0.112 0.888 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.570 -3.778 -15.107 17.315 hybrid contribution -0.158 -0.350 0.788 0.876 sum 7.412 -4.128 -14.319 16.644 Atomic orbital electron populations 1.22096 0.98218 0.99354 1.00909 1.18959 0.90887 0.94542 0.79886 0.91894 1.21347 1.31778 1.12941 0.90255 0.92231 1.24903 0.94970 0.94976 0.98993 1.69889 1.36379 1.22645 1.23659 0.86437 0.78599 0.79551 0.82774 1.19828 1.20922 1.20940 1.48220 1.48849 1.11703 1.23576 1.21589 1.01817 0.83174 0.99347 1.20077 0.79542 0.87152 0.84006 1.90679 1.58142 1.16896 1.76652 1.20742 1.00296 0.98005 0.95591 1.19393 0.94621 0.96475 0.95916 1.21014 0.91751 0.99571 0.98563 1.20999 1.00568 0.94690 0.95701 1.21019 0.91571 1.00983 1.01514 1.17634 0.91476 0.91407 0.95079 1.91512 1.84157 1.64827 1.70568 1.17475 0.77514 0.98475 1.00021 1.91524 1.28209 1.95499 1.95093 0.88779 0.96942 0.95087 0.92728 0.93155 0.90734 0.92939 0.87946 0.87490 0.84291 0.84307 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.61 2.64 -69.08 -0.18 6.43 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.60 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.59 -12.53 2.75 -175.26 -0.48 -13.02 16 13 C 0.08 1.37 9.48 59.85 0.57 1.94 16 14 C 0.51 10.39 7.66 -10.98 -0.08 10.31 16 15 O -0.55 -13.59 15.28 5.56 0.08 -13.50 16 16 C -0.11 -1.54 4.11 -29.03 -0.12 -1.66 16 17 C -0.06 -0.91 4.43 -104.57 -0.46 -1.37 16 18 C -0.09 -1.06 9.67 -39.58 -0.38 -1.44 16 19 C -0.10 -1.01 10.04 -39.58 -0.40 -1.41 16 20 C -0.13 -1.45 10.02 -39.53 -0.40 -1.85 16 21 C 0.06 0.91 7.31 -39.37 -0.29 0.62 16 22 F -0.13 -1.95 17.18 2.25 0.04 -1.91 16 23 C 0.09 1.35 7.13 -39.37 -0.28 1.07 16 24 F -0.12 -2.19 16.58 2.25 0.04 -2.15 16 25 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 31 H 0.05 0.65 6.44 -51.93 -0.33 0.32 16 32 H 0.10 1.30 7.21 -51.93 -0.37 0.93 16 33 H 0.11 1.22 7.97 -51.93 -0.41 0.80 16 34 H 0.14 1.31 8.03 -52.49 -0.42 0.89 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -32.67 313.14 -6.20 -38.86 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.12 Total: -0.96 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.08 Total: -3.35 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.14 Total: -37.61 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.50 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.08 Total: -4.06 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.67 -6.20 -38.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085208377.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.760 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds