Wall clock time and date at job start Tue Mar 31 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46944 * 2 1 4 4 N 1.46501 * 109.47267 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99944 * 264.77676 * 4 3 2 6 6 H 1.07993 * 120.00437 * 138.85704 * 5 4 3 7 7 C 1.38955 * 119.99697 * 318.84865 * 5 4 3 8 8 N 1.31413 * 119.99981 * 341.82861 * 7 5 4 9 9 Si 1.86800 * 119.99653 * 161.82613 * 7 5 4 10 10 H 1.48498 * 109.47545 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46896 * 120.00456 * 9 7 5 12 12 H 1.48501 * 109.46991 * 240.00002 * 9 7 5 13 13 C 1.34772 * 120.00096 * 84.76387 * 4 3 2 14 14 O 1.21300 * 120.00264 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00219 * 0.02562 * 13 4 3 16 16 C 1.50700 * 109.47518 * 179.97438 * 15 13 4 17 17 C 1.38230 * 119.98482 * 265.01953 * 16 15 13 18 18 C 1.38186 * 120.04771 * 179.97438 * 17 16 15 19 19 C 1.38499 * 120.02587 * 0.02562 * 18 17 16 20 20 F 1.35101 * 120.01063 * 180.02562 * 19 18 17 21 21 C 1.38401 * 119.97483 * 359.71963 * 19 18 17 22 22 C 1.38442 * 119.94824 * 0.53796 * 21 19 18 23 23 F 1.35098 * 120.01593 * 179.73777 * 22 21 19 24 24 H 1.08999 * 109.46758 * 59.99799 * 1 2 3 25 25 H 1.09002 * 109.46707 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46784 * 299.99618 * 1 2 3 27 27 H 1.09002 * 109.46784 * 240.00382 * 2 1 3 28 28 H 1.08999 * 109.47229 * 120.00446 * 2 1 3 29 29 H 1.09002 * 109.47068 * 60.00556 * 3 2 1 30 30 H 1.08999 * 109.47522 * 300.00267 * 3 2 1 31 31 H 0.96997 * 119.99409 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47345 * 59.99012 * 15 13 4 33 33 H 1.09005 * 109.46479 * 299.99219 * 15 13 4 34 34 H 1.07999 * 119.97470 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.98341 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.02600 * 180.27763 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1910 1.5505 1.1815 6 1 5.0711 0.9483 1.3521 7 6 3.7540 2.4350 2.1601 8 7 2.9285 3.4078 1.8452 9 14 4.3399 2.2411 3.9232 10 1 5.2576 1.0772 4.0147 11 1 5.0575 3.4711 4.3443 12 1 3.1707 2.0213 4.8120 13 6 4.1784 1.3363 -1.1632 14 8 5.3914 1.3368 -1.1638 15 6 3.4244 1.2179 -2.4627 16 6 4.4032 1.1141 -3.6038 17 6 4.7728 2.2482 -4.3023 18 6 5.6706 2.1546 -5.3486 19 6 6.2008 0.9240 -5.6988 20 9 7.0790 0.8329 -6.7215 21 6 5.8356 -0.2114 -4.9968 22 6 4.9319 -0.1172 -3.9522 23 9 4.5704 -1.2255 -3.2694 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 2.6232 4.0249 2.5284 32 1 2.7979 2.0991 -2.6008 33 1 2.7976 0.3264 -2.4390 34 1 4.3595 3.2082 -4.0301 35 1 5.9590 3.0415 -5.8933 36 1 6.2519 -1.1707 -5.2663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087161045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:37 Heat of formation + Delta-G solvation = -106.830745 kcal Electronic energy + Delta-G solvation = -22286.154391 eV Core-core repulsion = 18599.215381 eV Total energy + Delta-G solvation = -3686.939011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.91332 -48.73205 -39.22201 -38.06587 -35.25815 -32.97833 -32.10683 -31.15307 -30.64191 -27.38241 -25.72931 -24.29307 -23.04803 -21.89193 -20.97332 -18.97348 -18.03715 -17.06554 -16.88409 -16.19330 -15.77175 -15.65162 -15.23505 -15.07165 -14.81543 -14.34608 -14.20472 -13.99574 -13.80905 -13.59736 -12.97844 -12.63770 -12.42546 -11.84316 -11.78468 -11.63520 -11.48348 -11.40668 -11.23980 -11.06417 -10.98683 -10.63041 -10.31756 -10.27420 -9.95144 -8.94736 -8.93102 -8.61172 -8.24507 -7.42912 -6.33489 -4.01587 1.12051 1.17239 3.15430 3.25937 3.32170 3.49351 3.89211 4.02743 4.15886 4.58561 4.70342 4.75957 4.90651 4.98485 5.05811 5.28076 5.54345 5.60027 5.71577 5.76850 5.86258 5.92428 5.97883 6.06402 6.11016 6.17619 6.25467 6.35986 6.43259 6.47975 6.59466 6.88169 6.93232 7.21610 7.57891 8.29072 8.50385 9.18604 9.38057 10.00078 10.71618 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020837 B = 0.004861 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.410524 B = 5758.672099 C = 6367.530012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.108 3.892 4 N -0.441 5.441 5 C -0.306 4.306 6 H 0.088 0.912 7 C 0.039 3.961 8 N -0.872 5.872 9 Si 0.916 3.084 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.466 3.534 14 O -0.573 6.573 15 C -0.104 4.104 16 C -0.086 4.086 17 C -0.053 4.053 18 C -0.162 4.162 19 C 0.115 3.885 20 F -0.138 7.138 21 C -0.192 4.192 22 C 0.142 3.858 23 F -0.129 7.129 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.267 0.733 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -3.549 -10.976 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.016 4.016 4 N -0.160 5.160 5 C -0.434 4.434 6 H 0.105 0.895 7 C -0.165 4.165 8 N -0.510 5.510 9 Si 0.743 3.257 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.254 3.746 14 O -0.456 6.456 15 C -0.144 4.144 16 C -0.087 4.087 17 C -0.071 4.071 18 C -0.181 4.181 19 C 0.095 3.905 20 F -0.117 7.117 21 C -0.212 4.212 22 C 0.122 3.878 23 F -0.107 7.107 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.793 -3.435 -10.860 11.727 hybrid contribution 0.238 -0.210 0.851 0.908 sum -2.556 -3.645 -10.009 10.954 Atomic orbital electron populations 1.21682 0.96301 1.00734 1.01555 1.22008 0.94926 0.99330 1.01843 1.21555 0.82261 0.94269 1.03522 1.43416 1.04409 1.63493 1.04672 1.19416 1.11932 1.21329 0.90759 0.89460 1.25412 0.97031 0.93539 1.00532 1.69928 1.33624 1.13532 1.33874 0.86028 0.78643 0.78569 0.82449 1.19188 1.20747 1.20604 1.20119 0.88043 0.82109 0.84336 1.90548 1.13935 1.54437 1.86696 1.20740 0.97110 1.04371 0.92196 1.19645 0.99793 0.91797 0.97506 1.20770 0.95273 0.98096 0.92964 1.21097 1.00210 0.96508 1.00299 1.17218 0.91655 0.94002 0.87583 1.91492 1.66518 1.97045 1.56635 1.20895 1.02086 0.99654 0.98559 1.17087 0.96237 0.82835 0.91643 1.91510 1.90027 1.50827 1.78323 0.93150 0.93418 0.92731 0.93093 0.91633 0.87731 0.93396 0.92339 0.88440 0.88910 0.84023 0.84296 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.14 -2.50 6.17 -26.73 -0.16 -2.66 16 3 C 0.11 2.25 4.69 -4.04 -0.02 2.24 16 4 N -0.44 -10.93 2.50 -114.81 -0.29 -11.22 16 5 C -0.31 -8.41 8.84 -14.93 -0.13 -8.54 16 6 H 0.09 2.54 7.82 -52.49 -0.41 2.13 16 7 C 0.04 1.02 4.95 -17.47 -0.09 0.94 16 8 N -0.87 -23.14 11.61 55.50 0.64 -22.50 16 9 Si 0.92 20.51 29.59 -169.99 -5.03 15.48 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 13 C 0.47 11.20 7.59 -10.99 -0.08 11.12 16 14 O -0.57 -15.95 15.95 5.54 0.09 -15.86 16 15 C -0.10 -1.88 4.21 -29.03 -0.12 -2.00 16 16 C -0.09 -1.46 4.38 -104.54 -0.46 -1.92 16 17 C -0.05 -0.77 9.68 -39.60 -0.38 -1.16 16 18 C -0.16 -2.14 10.03 -39.50 -0.40 -2.54 16 19 C 0.11 1.61 7.30 -39.43 -0.29 1.32 16 20 F -0.14 -1.87 17.27 2.25 0.04 -1.83 16 21 C -0.19 -2.81 10.01 -39.45 -0.39 -3.21 16 22 C 0.14 2.38 7.24 -39.43 -0.29 2.09 16 23 F -0.13 -2.28 16.57 2.25 0.04 -2.24 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.86 6.60 -51.93 -0.34 0.52 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.10 2.42 5.76 -51.93 -0.30 2.12 16 30 H 0.05 0.90 6.66 -51.93 -0.35 0.55 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 32 H 0.10 1.55 7.32 -51.93 -0.38 1.16 16 33 H 0.09 1.54 6.19 -51.93 -0.32 1.22 16 34 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -30.87 315.18 -6.40 -37.26 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.19 Total: 2.14 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.44 Total: -5.98 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.36 Total: -33.71 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.09 Total: -15.86 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.08 Total: -4.07 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.87 -6.40 -37.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087161045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.569 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds