Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47109 * 2 1 4 4 C 1.50703 * 109.47257 * 240.00389 * 2 1 3 5 5 H 1.08003 * 119.99541 * 239.99722 * 4 2 1 6 6 C 1.37877 * 120.00106 * 59.99405 * 4 2 1 7 7 N 1.31513 * 119.99659 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99765 * 180.02562 * 6 4 2 9 9 H 1.48489 * 109.47536 * 60.00174 * 8 6 4 10 10 H 1.48506 * 109.47022 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46916 * 299.99436 * 8 6 4 12 12 N 1.46496 * 109.47640 * 119.99853 * 2 1 3 13 13 C 1.46504 * 119.99884 * 59.99862 * 12 2 1 14 14 C 1.34777 * 120.00258 * 240.00516 * 12 2 1 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 12 2 17 17 C 1.50699 * 109.46817 * 179.97438 * 16 14 12 18 18 C 1.38255 * 119.96577 * 269.72349 * 17 16 14 19 19 C 1.38217 * 120.07462 * 179.76563 * 18 17 16 20 20 C 1.38416 * 119.99535 * 0.51340 * 19 18 17 21 21 F 1.35093 * 120.03415 * 179.72332 * 20 19 18 22 22 C 1.38652 * 119.92959 * 359.74020 * 20 19 18 23 23 F 1.35097 * 120.03457 * 180.02562 * 22 20 19 24 24 C 1.38212 * 119.96521 * 90.00112 * 17 16 14 25 25 H 1.08992 * 109.47336 * 59.99890 * 1 2 3 26 26 H 1.09005 * 109.47109 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47163 * 299.99602 * 1 2 3 28 28 H 0.97000 * 119.99607 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47441 * 270.00307 * 13 12 2 30 30 H 1.09005 * 109.47121 * 30.00515 * 13 12 2 31 31 H 1.08997 * 109.47160 * 150.00168 * 13 12 2 32 32 H 1.09000 * 109.47318 * 299.99141 * 16 14 12 33 33 H 1.09000 * 109.47161 * 59.99772 * 16 14 12 34 34 H 1.08004 * 119.96534 * 0.02562 * 18 17 16 35 35 H 1.07997 * 120.00430 * 180.25555 * 19 18 17 36 36 H 1.08001 * 120.00037 * 359.95138 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1202 -4.0079 9 1 1.8260 -2.5200 -4.0078 10 1 1.8269 -0.4198 -5.2205 11 1 3.8063 -1.1205 -4.0082 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0865 1.1255 1.8912 16 6 3.2952 -0.7458 3.3140 17 6 4.1329 0.2012 4.1340 18 6 5.4954 0.2845 3.9148 19 6 6.2652 1.1558 4.6622 20 6 5.6737 1.9386 5.6386 21 9 6.4262 2.7864 6.3734 22 6 4.3081 1.8512 5.8620 23 9 3.7284 2.6146 6.8141 24 6 3.5392 0.9814 5.1081 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7093 1.1618 -3.4843 29 1 0.7377 -2.1444 1.9994 30 1 1.5296 -2.5969 0.4708 31 1 2.4630 -2.5818 1.9863 32 1 2.4472 -1.0880 3.9073 33 1 3.9006 -1.6024 3.0177 34 1 5.9583 -0.3290 3.1559 35 1 7.3288 1.2230 4.4873 36 1 2.4754 0.9128 5.2809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087298564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = -102.187879 kcal Electronic energy + Delta-G solvation = -21810.406464 eV Core-core repulsion = 18123.668783 eV Total energy + Delta-G solvation = -3686.737681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.47071 -48.54898 -39.75944 -38.40562 -35.37280 -33.08919 -32.35058 -30.84546 -29.59036 -27.18901 -26.08117 -25.24689 -23.32734 -22.43566 -20.86665 -18.46283 -17.88951 -17.21176 -16.97356 -16.69472 -16.31698 -16.12092 -15.34473 -14.96540 -14.88507 -14.55111 -14.44006 -14.12491 -13.88266 -13.22371 -12.96596 -12.57919 -12.47681 -12.12635 -11.92176 -11.76051 -11.54335 -11.51668 -11.28118 -11.07362 -10.87650 -10.71956 -10.29837 -10.20089 -9.27769 -9.16007 -9.01934 -8.58441 -8.45269 -7.64953 -6.10605 -4.19156 0.87341 0.97603 3.24610 3.25071 3.28854 3.30869 3.33610 3.75380 3.96974 4.28564 4.36716 4.46126 4.58832 4.94142 5.05074 5.16420 5.21375 5.31282 5.48202 5.63180 5.70997 5.79626 5.87529 5.96302 5.97342 6.30922 6.33544 6.69539 6.72495 6.79504 7.02598 7.36689 7.49303 7.67598 7.97476 8.15986 8.47001 8.78496 8.98916 9.47421 10.94657 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.003734 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.282711 B = 7496.906852 C = 7716.403626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.081 3.919 14 C 0.504 3.496 15 O -0.545 6.545 16 C -0.106 4.106 17 C -0.034 4.034 18 C -0.086 4.086 19 C -0.123 4.123 20 C 0.059 3.941 21 F -0.133 7.133 22 C 0.068 3.932 23 F -0.132 7.132 24 C -0.113 4.113 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.010 0.990 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 -5.277 14.357 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.324 5.324 13 C -0.063 4.063 14 C 0.290 3.710 15 O -0.423 6.423 16 C -0.146 4.146 17 C -0.035 4.035 18 C -0.104 4.104 19 C -0.142 4.142 20 C 0.038 3.962 21 F -0.112 7.112 22 C 0.048 3.952 23 F -0.110 7.110 24 C -0.132 4.132 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.735 -4.477 14.143 15.905 hybrid contribution 0.242 -0.234 -0.620 0.705 sum 5.977 -4.711 13.524 15.518 Atomic orbital electron populations 1.22080 0.98186 0.99386 1.00800 1.18945 0.90871 0.94549 0.79868 0.91895 1.21267 1.32013 1.13078 0.90303 0.92288 1.24894 0.94909 0.94963 0.98976 1.69869 1.36185 1.22503 1.23921 0.86552 0.79225 0.79558 0.82019 1.20223 1.21159 1.20251 1.48251 1.48928 1.11657 1.23537 1.21634 0.98823 0.83275 1.02525 1.20156 0.79632 0.87218 0.84025 1.90692 1.58072 1.16950 1.76614 1.20809 1.00321 0.97974 0.95522 1.19304 0.93687 0.96279 0.94213 1.20972 0.92980 0.98091 0.98353 1.21013 1.01442 0.96445 0.95282 1.17656 0.87686 0.94890 0.95925 1.91502 1.75575 1.68600 1.75531 1.17586 0.89844 0.95761 0.92037 1.91511 1.84393 1.73648 1.61489 1.20909 1.00641 0.95708 0.95897 0.88860 0.95157 0.97048 0.92585 0.93797 0.90002 0.92732 0.88045 0.87738 0.84234 0.83747 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.38 2.64 -69.09 -0.18 6.20 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -13.82 7.99 -34.44 -0.28 -14.09 16 5 H 0.06 1.50 7.33 -52.48 -0.38 1.12 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 N -0.59 -11.79 2.75 -175.26 -0.48 -12.27 16 13 C 0.08 1.23 9.24 59.85 0.55 1.78 16 14 C 0.50 9.55 7.67 -10.98 -0.08 9.46 16 15 O -0.54 -12.80 15.36 5.56 0.09 -12.71 16 16 C -0.11 -1.34 4.38 -29.03 -0.13 -1.47 16 17 C -0.03 -0.44 4.37 -104.63 -0.46 -0.90 16 18 C -0.09 -1.03 9.69 -39.58 -0.38 -1.41 16 19 C -0.12 -1.42 10.02 -39.52 -0.40 -1.82 16 20 C 0.06 0.78 7.31 -39.36 -0.29 0.49 16 21 F -0.13 -1.84 17.18 2.25 0.04 -1.80 16 22 C 0.07 0.94 7.31 -39.36 -0.29 0.65 16 23 F -0.13 -1.90 17.18 2.25 0.04 -1.86 16 24 C -0.11 -1.48 9.68 -39.53 -0.38 -1.86 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.35 7.02 -51.93 -0.36 0.98 16 31 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 32 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.10 1.06 7.34 -51.93 -0.38 0.68 16 34 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 314.82 15.07 4.74 4.74 Total: -1.00 -31.20 314.82 -6.24 -37.45 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.20 Total: -0.57 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.07 Total: -4.40 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.15 Total: -36.37 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.08 Total: -3.66 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.20 -6.24 -37.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.742 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds