Wall clock time and date at job start Tue Mar 31 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47342 * 210.00322 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 3 17 17 C 1.38259 * 119.99653 * 264.72043 * 16 15 13 18 18 C 1.38215 * 120.06835 * 179.77230 * 17 16 15 19 19 C 1.38259 * 120.07013 * 0.50814 * 18 17 16 20 20 C 1.38366 * 119.99926 * 359.74565 * 19 18 17 21 21 F 1.35099 * 120.03889 * 179.97438 * 20 19 18 22 22 C 1.38364 * 120.00206 * 84.99954 * 16 15 13 23 23 F 1.35100 * 120.03457 * 359.97438 * 22 16 15 24 24 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 25 25 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 27 27 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 28 28 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 29 29 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 30 30 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 31 31 H 0.97004 * 119.99796 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 34 34 H 1.07999 * 119.96842 * 0.02562 * 17 16 15 35 35 H 1.08002 * 119.96743 * 180.25500 * 18 17 16 36 36 H 1.07996 * 119.99935 * 179.77194 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0137 3.4369 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7587 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 6 2.3292 2.2258 3.6176 17 6 3.5778 2.1721 4.2089 18 6 3.8851 3.0199 5.2564 19 6 2.9410 3.9162 5.7220 20 6 1.6888 3.9688 5.1358 21 9 0.7654 4.8440 5.5905 22 6 1.3822 3.1217 4.0813 23 9 0.1601 3.1713 3.5074 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6876 -2.0285 30 1 2.0956 3.1410 -1.1385 31 1 5.7176 2.5736 -4.0832 32 1 0.9499 1.0100 2.5343 33 1 2.6281 0.4167 2.5258 34 1 4.3153 1.4697 3.8493 35 1 4.8624 2.9793 5.7144 36 1 3.1811 4.5755 6.5429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094712521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:03 Heat of formation + Delta-G solvation = -100.834889 kcal Electronic energy + Delta-G solvation = -22242.217169 eV Core-core repulsion = 18555.538159 eV Total energy + Delta-G solvation = -3686.679011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.42019 -48.49851 -39.68551 -38.48107 -35.42971 -33.09410 -32.47429 -30.36118 -30.31757 -28.64506 -26.89078 -23.06439 -22.98825 -22.83210 -21.59109 -18.51697 -17.81001 -17.31922 -16.95960 -16.89438 -16.64133 -16.08103 -15.48184 -14.89781 -14.87585 -14.73715 -14.33723 -14.02318 -13.57395 -13.49777 -13.25525 -12.92068 -12.58294 -12.33443 -12.16820 -12.02366 -11.88702 -11.64531 -11.44178 -11.20365 -10.97599 -10.72234 -10.49997 -10.16455 -9.56250 -9.25933 -8.80194 -8.73138 -8.59779 -7.75457 -6.10123 -4.08695 0.93169 0.93903 3.25329 3.28457 3.30160 3.34994 3.37417 3.77386 3.84682 4.33860 4.38970 4.43796 4.65337 4.90004 5.00409 5.02550 5.22559 5.24261 5.30281 5.46320 5.53481 5.64765 5.74782 5.77641 5.92553 5.97074 6.06402 6.13386 6.22484 6.39316 6.67896 6.73518 6.94298 7.31868 7.59958 8.20799 8.45245 8.89550 8.95065 9.50508 11.03204 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.004784 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.449224 B = 5851.312147 C = 6189.171391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.216 3.784 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.511 3.489 14 O -0.533 6.533 15 C -0.107 4.107 16 C -0.062 4.062 17 C -0.087 4.087 18 C -0.099 4.099 19 C -0.132 4.132 20 C 0.064 3.936 21 F -0.132 7.132 22 C 0.081 3.919 23 F -0.127 7.127 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 -4.083 16.558 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.323 5.323 4 C 0.096 3.904 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.297 3.703 14 O -0.409 6.409 15 C -0.147 4.147 16 C -0.064 4.064 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.150 4.150 20 C 0.044 3.956 21 F -0.111 7.111 22 C 0.061 3.939 23 F -0.105 7.105 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.312 -3.392 16.367 18.244 hybrid contribution -0.845 0.709 -0.773 1.346 sum -8.157 -2.683 15.594 17.802 Atomic orbital electron populations 1.22245 0.96719 1.01646 1.02363 1.21474 0.93467 0.83760 1.03192 1.47916 1.64089 1.13433 1.06880 1.19660 0.97348 0.93412 0.80009 1.21315 0.95294 1.32888 1.07140 0.90747 1.24846 0.94983 0.95773 0.97348 1.69895 1.15123 1.45016 1.23580 0.86865 0.81500 0.81664 0.79764 1.19916 1.21040 1.19066 1.20024 0.78625 0.86951 0.84654 1.90700 1.45254 1.17946 1.87048 1.20756 1.04518 0.98326 0.91074 1.19363 0.93529 0.96707 0.96783 1.21042 0.94888 0.99421 0.95215 1.21024 0.99347 0.94756 0.96612 1.21028 0.91314 1.01075 1.01618 1.17617 0.88742 0.92359 0.96883 1.91507 1.64897 1.66719 1.87982 1.17460 0.82448 0.99135 0.94875 1.91506 1.40106 1.95466 1.83462 0.92179 0.91884 0.92911 0.89587 0.91327 0.95196 0.94623 0.92562 0.87959 0.87307 0.84174 0.84212 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.57 5.94 -4.04 -0.02 1.55 16 3 N -0.59 -11.96 2.46 -175.06 -0.43 -12.39 16 4 C 0.22 5.29 4.23 -5.20 -0.02 5.26 16 5 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 6 H 0.07 2.31 8.06 -52.48 -0.42 1.88 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 9 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.51 10.30 7.67 -10.98 -0.08 10.21 16 14 O -0.53 -13.20 15.61 5.55 0.09 -13.11 16 15 C -0.11 -1.52 4.16 -29.03 -0.12 -1.64 16 16 C -0.06 -0.90 4.38 -104.57 -0.46 -1.36 16 17 C -0.09 -1.06 9.68 -39.58 -0.38 -1.45 16 18 C -0.10 -1.03 10.04 -39.58 -0.40 -1.43 16 19 C -0.13 -1.46 10.02 -39.53 -0.40 -1.85 16 20 C 0.06 0.90 7.31 -39.37 -0.29 0.61 16 21 F -0.13 -1.92 17.18 2.25 0.04 -1.88 16 22 C 0.08 1.25 7.25 -39.37 -0.29 0.97 16 23 F -0.13 -2.11 16.48 2.25 0.04 -2.07 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.64 7.24 -51.93 -0.38 0.26 16 27 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 28 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 29 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 30 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.10 1.27 6.86 -51.93 -0.36 0.91 16 33 H 0.11 1.24 7.30 -51.93 -0.38 0.86 16 34 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 316.95 15.07 4.78 4.78 Total: -1.00 -34.85 316.95 -6.20 -41.05 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.29 Total: -2.35 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.52 Total: -4.26 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.34 Total: -39.18 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.08 Total: -3.95 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.85 -6.20 -41.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094712521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.782 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds