Wall clock time and date at job start Tue Mar 31 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47342 * 210.00322 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 3 17 17 C 1.38259 * 119.99653 * 264.72043 * 16 15 13 18 18 C 1.38215 * 120.06835 * 179.77230 * 17 16 15 19 19 C 1.38259 * 120.07013 * 0.50814 * 18 17 16 20 20 C 1.38366 * 119.99926 * 359.74565 * 19 18 17 21 21 F 1.35099 * 120.03889 * 179.97438 * 20 19 18 22 22 C 1.38364 * 120.00206 * 84.99954 * 16 15 13 23 23 F 1.35100 * 120.03457 * 359.97438 * 22 16 15 24 24 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 25 25 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 27 27 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 28 28 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 29 29 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 30 30 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 31 31 H 0.97004 * 119.99796 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 34 34 H 1.07999 * 119.96842 * 0.02562 * 17 16 15 35 35 H 1.08002 * 119.96743 * 180.25500 * 18 17 16 36 36 H 1.07996 * 119.99935 * 179.77194 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0137 3.4369 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7587 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 6 2.3292 2.2258 3.6176 17 6 3.5778 2.1721 4.2089 18 6 3.8851 3.0199 5.2564 19 6 2.9410 3.9162 5.7220 20 6 1.6888 3.9688 5.1358 21 9 0.7654 4.8440 5.5905 22 6 1.3822 3.1217 4.0813 23 9 0.1601 3.1713 3.5074 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6876 -2.0285 30 1 2.0956 3.1410 -1.1385 31 1 5.7176 2.5736 -4.0832 32 1 0.9499 1.0100 2.5343 33 1 2.6281 0.4167 2.5258 34 1 4.3153 1.4697 3.8493 35 1 4.8624 2.9793 5.7144 36 1 3.1811 4.5755 6.5429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094712521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:03 Heat of formation + Delta-G solvation = -122.858889 kcal Electronic energy + Delta-G solvation = -22243.172202 eV Core-core repulsion = 18555.538159 eV Total energy + Delta-G solvation = -3687.634043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.52528 -49.61686 -41.04991 -39.63441 -37.01127 -34.93200 -33.88349 -31.85488 -31.27926 -30.10054 -28.37857 -24.69235 -24.25504 -23.83028 -22.91651 -19.98916 -19.11779 -18.90201 -18.33869 -18.13313 -17.91006 -17.28266 -17.02971 -16.39151 -16.03396 -15.87385 -15.68831 -15.46889 -14.90367 -14.73344 -14.50620 -14.45737 -14.01467 -13.81784 -13.47965 -13.23443 -13.09993 -13.02730 -12.72167 -12.56653 -12.43065 -12.18778 -12.04812 -11.87678 -11.74535 -10.84270 -10.78826 -9.88717 -9.73648 -9.43377 -8.35007 -6.38940 -0.05150 -0.02846 1.30388 1.34300 1.42208 1.76896 2.17589 2.29217 2.51847 2.80153 2.99510 3.27608 3.45464 3.73859 3.76202 3.95304 4.13754 4.17298 4.28532 4.41861 4.46578 4.62343 4.76188 4.78800 4.87084 4.92508 4.99063 4.99476 5.01043 5.16206 5.29567 5.38236 5.46237 5.64398 5.77916 6.23327 6.61863 6.68414 7.21103 7.39550 8.81602 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.004784 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.449224 B = 5851.312147 C = 6189.171391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.225 3.775 5 C -0.532 4.532 6 H 0.035 0.965 7 C 0.015 3.985 8 N -0.942 5.942 9 Si 0.941 3.059 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.242 1.242 13 C 0.501 3.499 14 O -0.590 6.590 15 C -0.094 4.094 16 C -0.083 4.083 17 C -0.093 4.093 18 C -0.088 4.088 19 C -0.122 4.122 20 C 0.042 3.958 21 F -0.142 7.142 22 C 0.050 3.950 23 F -0.144 7.144 24 H 0.043 0.957 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.012 0.988 31 H 0.268 0.732 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -5.017 17.804 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.102 3.898 5 C -0.570 4.570 6 H 0.053 0.947 7 C -0.184 4.184 8 N -0.583 5.583 9 Si 0.764 3.236 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.165 1.165 13 C 0.290 3.710 14 O -0.471 6.471 15 C -0.133 4.133 16 C -0.084 4.084 17 C -0.111 4.111 18 C -0.106 4.106 19 C -0.140 4.140 20 C 0.022 3.978 21 F -0.120 7.120 22 C 0.030 3.970 23 F -0.122 7.122 24 H 0.062 0.938 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.160 0.840 34 H 0.177 0.823 35 H 0.197 0.803 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.988 -4.385 17.631 19.846 hybrid contribution -0.536 0.959 -1.067 1.531 sum -8.524 -3.426 16.564 18.941 Atomic orbital electron populations 1.22180 0.94447 1.03706 1.01803 1.21833 0.95287 0.80947 1.04482 1.48051 1.64035 1.15331 1.05618 1.19286 0.95063 0.92777 0.82642 1.21531 0.96857 1.31969 1.06659 0.94666 1.25758 0.96573 0.97116 0.98908 1.70031 1.17191 1.46556 1.24486 0.85813 0.80560 0.79075 0.78117 1.20529 1.19768 1.16515 1.21061 0.77081 0.86549 0.86292 1.90659 1.47799 1.20607 1.88046 1.20738 1.06525 0.98612 0.87406 1.19525 0.94405 0.97197 0.97317 1.21430 0.94241 1.00007 0.95439 1.21515 1.00624 0.93051 0.95411 1.21465 0.89902 1.01029 1.01636 1.17976 0.89825 0.92565 0.97389 1.91476 1.65469 1.67015 1.88076 1.17849 0.82434 1.00638 0.96081 1.91447 1.41126 1.95723 1.83932 0.93775 0.88451 0.92458 0.90603 0.87809 0.93567 0.96978 0.92272 0.85940 0.83973 0.82345 0.80262 0.80812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.91 16 2 C 0.10 2.70 5.94 86.38 0.51 3.21 16 3 N -0.60 -24.07 2.46 -826.15 -2.03 -26.09 16 4 C 0.22 11.09 4.23 85.63 0.36 11.45 16 5 C -0.53 -31.11 9.94 25.60 0.25 -30.85 16 6 H 0.03 2.27 8.06 -2.91 -0.02 2.25 16 7 C 0.01 0.87 5.47 84.66 0.46 1.33 16 8 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 9 Si 0.94 45.03 27.47 68.60 1.88 46.91 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 13 C 0.50 20.15 7.67 87.66 0.67 20.82 16 14 O -0.59 -30.05 15.61 -3.04 -0.05 -30.10 16 15 C -0.09 -2.52 4.16 29.10 0.12 -2.39 16 16 C -0.08 -2.31 4.38 -19.83 -0.09 -2.40 16 17 C -0.09 -2.05 9.68 22.27 0.22 -1.84 16 18 C -0.09 -1.54 10.04 22.27 0.22 -1.32 16 19 C -0.12 -2.40 10.02 22.31 0.22 -2.17 16 20 C 0.04 1.16 7.31 22.41 0.16 1.32 16 21 F -0.14 -4.10 17.18 44.97 0.77 -3.33 16 22 C 0.05 1.54 7.25 22.41 0.16 1.70 16 23 F -0.14 -4.88 16.48 44.97 0.74 -4.14 16 24 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.24 7.24 -2.39 -0.02 1.22 16 27 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 28 H 0.10 2.16 6.43 -2.39 -0.02 2.14 16 29 H 0.05 2.12 7.13 -2.39 -0.02 2.10 16 30 H 0.01 0.66 6.85 -2.38 -0.02 0.64 16 31 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.12 2.77 6.86 -2.38 -0.02 2.75 16 33 H 0.14 2.78 7.30 -2.39 -0.02 2.77 16 34 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -80.54 316.95 6.69 -73.85 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.04 Total: 5.90 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.02 Total: -4.04 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -1.73 Total: -85.05 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.05 Total: -30.10 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 1.51 Total: -7.47 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -80.54 6.69 -73.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094712521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.010 kcal (2) G-P(sol) polarization free energy of solvation -80.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds