Wall clock time and date at job start Tue Mar 31 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.47118 * 2 1 4 4 C 1.50699 * 109.47264 * 240.00269 * 2 1 3 5 5 H 1.08004 * 120.00068 * 239.99873 * 4 2 1 6 6 C 1.37879 * 120.00228 * 59.99712 * 4 2 1 7 7 N 1.31514 * 119.99859 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00079 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47263 * 90.00139 * 8 6 4 10 10 H 1.48506 * 109.47145 * 209.99956 * 8 6 4 11 11 H 1.48508 * 109.47058 * 329.99884 * 8 6 4 12 12 N 1.46494 * 109.47272 * 120.00038 * 2 1 3 13 13 C 1.46497 * 120.00065 * 60.00158 * 12 2 1 14 14 C 1.34780 * 120.00305 * 240.00423 * 12 2 1 15 15 O 1.21286 * 119.99723 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00442 * 180.02562 * 14 12 2 17 17 C 1.50698 * 109.47401 * 179.97438 * 16 14 12 18 18 C 1.38224 * 119.99194 * 264.97832 * 17 16 14 19 19 C 1.38186 * 120.05276 * 179.97438 * 18 17 16 20 20 C 1.38492 * 120.02401 * 359.97438 * 19 18 17 21 21 F 1.35107 * 120.01136 * 180.02562 * 20 19 18 22 22 C 1.38396 * 119.97620 * 359.79120 * 20 19 18 23 23 C 1.38445 * 119.94704 * 0.43906 * 22 20 19 24 24 F 1.35104 * 120.01039 * 179.81237 * 23 22 20 25 25 H 1.08994 * 109.46880 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47291 * 299.99952 * 1 2 3 27 27 H 1.09000 * 109.47024 * 60.00015 * 1 2 3 28 28 H 0.96993 * 120.00353 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46817 * 270.00068 * 13 12 2 30 30 H 1.08993 * 109.47170 * 30.00058 * 13 12 2 31 31 H 1.09005 * 109.47378 * 150.00368 * 13 12 2 32 32 H 1.09001 * 109.46931 * 59.99191 * 16 14 12 33 33 H 1.08999 * 109.46996 * 299.99645 * 16 14 12 34 34 H 1.08000 * 119.97482 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.98603 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.03048 * 180.25272 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.3428 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4279 14 6 2.7931 -0.0356 2.0834 15 8 3.0864 1.1255 1.8912 16 6 3.2960 -0.7461 3.3135 17 6 4.1335 0.2009 4.1336 18 6 5.5075 0.2153 3.9835 19 6 6.2767 1.0836 4.7344 20 6 5.6715 1.9409 5.6382 21 9 6.4238 2.7901 6.3719 22 6 4.2955 1.9308 5.7859 23 6 3.5263 1.0571 5.0364 24 9 2.1833 1.0436 5.1823 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1614 -3.4843 29 1 0.7376 -2.1443 1.9993 30 1 1.5296 -2.5968 0.4708 31 1 2.4629 -2.5819 1.9863 32 1 3.9017 -1.6023 3.0164 33 1 2.4485 -1.0891 3.9069 34 1 5.9803 -0.4521 3.2780 35 1 7.3501 1.0942 4.6160 36 1 3.8223 2.6019 6.4874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094817272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:29 Heat of formation + Delta-G solvation = -101.897673 kcal Electronic energy + Delta-G solvation = -22057.763833 eV Core-core repulsion = 18371.038737 eV Total energy + Delta-G solvation = -3686.725096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.06480 -48.94252 -39.58023 -38.38229 -35.34486 -33.08779 -32.39471 -30.85139 -29.56012 -27.09704 -26.03762 -25.22195 -23.26535 -22.44404 -20.83922 -18.42054 -18.17449 -17.27978 -16.70778 -16.39554 -15.98002 -15.80820 -15.52941 -15.25191 -15.01051 -14.72424 -14.40261 -14.17920 -13.83433 -13.05798 -12.86983 -12.54930 -12.45455 -12.03369 -11.89501 -11.71576 -11.57867 -11.48252 -11.32184 -11.07138 -10.82891 -10.68655 -10.27452 -10.18264 -9.25868 -9.13740 -9.00556 -8.56171 -8.43418 -7.60851 -6.08527 -4.16897 0.90324 0.98088 3.24747 3.25906 3.31503 3.33378 3.36809 3.84010 3.99174 4.37570 4.38844 4.50778 4.58803 4.76668 5.05810 5.19863 5.23980 5.39170 5.51540 5.70263 5.73684 5.79018 5.91806 5.97224 6.01565 6.20241 6.34291 6.70633 6.75801 6.83598 7.06170 7.40695 7.52542 7.70264 8.00522 8.18645 8.50607 8.81309 9.02801 9.49594 10.96802 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.004070 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.166766 B = 6878.687133 C = 7215.407497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.592 5.592 13 C 0.082 3.918 14 C 0.506 3.494 15 O -0.546 6.546 16 C -0.105 4.105 17 C -0.098 4.098 18 C -0.050 4.050 19 C -0.162 4.162 20 C 0.121 3.879 21 F -0.136 7.136 22 C -0.192 4.192 23 C 0.144 3.856 24 F -0.128 7.128 25 H 0.029 0.971 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.263 0.737 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -4.485 15.201 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.323 5.323 13 C -0.062 4.062 14 C 0.292 3.708 15 O -0.425 6.425 16 C -0.145 4.145 17 C -0.099 4.099 18 C -0.068 4.068 19 C -0.181 4.181 20 C 0.102 3.898 21 F -0.114 7.114 22 C -0.211 4.211 23 C 0.125 3.875 24 F -0.106 7.106 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.406 -3.719 14.955 16.689 hybrid contribution 0.078 -0.360 -0.742 0.828 sum 6.484 -4.079 14.213 16.146 Atomic orbital electron populations 1.22078 0.98186 0.99388 1.00806 1.18946 0.90889 0.94547 0.79859 0.91913 1.21310 1.31900 1.13012 0.90296 0.92240 1.24899 0.94955 0.94955 0.98977 1.69880 1.36314 1.22526 1.23780 0.86493 0.79155 0.79296 0.82423 1.20612 1.21099 1.19940 1.48225 1.48915 1.11659 1.23530 1.21630 0.98844 0.83277 1.02469 1.20130 0.79554 0.87195 0.83956 1.90677 1.58214 1.16943 1.76617 1.20704 1.00304 0.97939 0.95523 1.19531 0.94610 0.98690 0.97089 1.20762 0.91798 0.97397 0.96884 1.21124 1.01416 0.97664 0.97894 1.17252 0.88183 0.91109 0.93262 1.91511 1.75852 1.68681 1.75388 1.20935 0.92758 1.02894 1.04547 1.17083 0.77277 0.96464 0.96693 1.91526 1.29201 1.95332 1.94541 0.95162 0.97014 0.88864 0.92662 0.93796 0.89991 0.92787 0.87667 0.88102 0.83918 0.84092 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.56 2.64 -69.09 -0.18 6.38 16 3 H 0.06 1.87 6.90 -51.92 -0.36 1.51 16 4 C -0.53 -14.04 7.99 -34.44 -0.28 -14.32 16 5 H 0.06 1.54 7.33 -52.48 -0.38 1.16 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 12 N -0.59 -12.37 2.75 -175.26 -0.48 -12.86 16 13 C 0.08 1.31 9.24 59.85 0.55 1.86 16 14 C 0.51 10.21 7.67 -10.99 -0.08 10.13 16 15 O -0.55 -13.39 15.36 5.55 0.09 -13.31 16 16 C -0.10 -1.48 4.15 -29.04 -0.12 -1.60 16 17 C -0.10 -1.38 4.38 -104.55 -0.46 -1.84 16 18 C -0.05 -0.61 9.67 -39.61 -0.38 -0.99 16 19 C -0.16 -1.83 10.02 -39.51 -0.40 -2.22 16 20 C 0.12 1.49 7.30 -39.43 -0.29 1.20 16 21 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 22 C -0.19 -2.45 10.01 -39.45 -0.39 -2.85 16 23 C 0.14 2.10 7.24 -39.43 -0.29 1.81 16 24 F -0.13 -1.98 16.57 2.25 0.04 -1.94 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 31 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 32 H 0.11 1.18 7.31 -51.93 -0.38 0.80 16 33 H 0.10 1.26 7.76 -51.93 -0.40 0.86 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -31.59 313.98 -6.25 -37.84 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.19 Total: -0.23 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.08 Total: -3.96 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.15 Total: -37.28 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.08 Total: -3.56 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.59 -6.25 -37.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094817272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.060 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds