Wall clock time and date at job start Tue Mar 31 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47290 * 2 1 4 4 C 1.46500 * 119.99594 * 270.00102 * 3 2 1 5 5 C 1.50697 * 109.47200 * 269.99675 * 4 3 2 6 6 H 1.08003 * 120.00189 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00188 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00086 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 120.00179 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46857 * 59.99980 * 9 7 5 11 11 H 1.48494 * 109.47047 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46838 * 300.00071 * 9 7 5 13 13 C 1.34773 * 120.00270 * 89.99673 * 3 2 1 14 14 O 1.21287 * 120.00152 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99948 * 0.02562 * 13 3 2 16 16 C 1.50700 * 109.47361 * 179.97438 * 15 13 3 17 17 C 1.38224 * 119.99213 * 265.02473 * 16 15 13 18 18 C 1.38187 * 120.05295 * 179.97438 * 17 16 15 19 19 C 1.38492 * 120.02416 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.00943 * 179.97438 * 19 18 17 21 21 C 1.38397 * 119.97529 * 359.72914 * 19 18 17 22 22 C 1.38445 * 119.94721 * 0.52975 * 21 19 18 23 23 F 1.35104 * 120.01039 * 179.74070 * 22 21 19 24 24 H 1.08997 * 109.46734 * 300.00040 * 1 2 3 25 25 H 1.09000 * 109.47277 * 60.00379 * 1 2 3 26 26 H 1.08999 * 109.47456 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46734 * 239.99960 * 2 1 3 28 28 H 1.09001 * 109.46571 * 119.99862 * 2 1 3 29 29 H 1.08997 * 109.47778 * 29.99792 * 4 3 2 30 30 H 1.09008 * 109.46905 * 149.99905 * 4 3 2 31 31 H 0.97004 * 120.00332 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47241 * 59.99623 * 15 13 3 33 33 H 1.08998 * 109.47060 * 299.99849 * 15 13 3 34 34 H 1.08009 * 119.97191 * 359.97414 * 17 16 15 35 35 H 1.07999 * 119.98601 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.03007 * 180.27174 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 3.3497 3.1271 -3.6172 9 14 5.9135 2.0961 -3.4172 10 1 6.1402 0.6394 -3.5955 11 1 6.1609 2.7962 -4.7032 12 1 6.8413 2.6185 -2.3821 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1599 1.1671 15 6 1.9923 1.3060 2.4722 16 6 2.3192 2.2292 3.6177 17 6 3.5672 2.1804 4.2099 18 6 3.8685 3.0267 5.2599 19 6 2.9198 3.9244 5.7205 20 9 3.2145 4.7513 6.7475 21 6 1.6716 3.9777 5.1251 22 6 1.3691 3.1256 4.0767 23 9 0.1492 3.1729 3.4979 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6876 -2.0284 30 1 2.0956 3.1410 -1.1385 31 1 3.6757 3.5176 -4.4432 32 1 2.6228 0.4187 2.5299 33 1 0.9445 1.0115 2.5302 34 1 4.3075 1.4803 3.8516 35 1 4.8441 2.9880 5.7216 36 1 0.9327 4.6804 5.4807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094817532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:07 Heat of formation + Delta-G solvation = -106.586673 kcal Electronic energy + Delta-G solvation = -22053.558255 eV Core-core repulsion = 18366.629828 eV Total energy + Delta-G solvation = -3686.928427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.05133 -48.93494 -39.57553 -38.35735 -35.29870 -33.02744 -32.37002 -30.83181 -30.09378 -28.11753 -26.32716 -23.28902 -23.06860 -22.90004 -21.60236 -18.45859 -18.17180 -17.26938 -16.66079 -16.33920 -16.08270 -15.83554 -15.69188 -15.23815 -14.94793 -14.58709 -14.35558 -14.18226 -13.84577 -13.38890 -13.16358 -12.81781 -12.51185 -12.10794 -11.90675 -11.84573 -11.77725 -11.49598 -11.34517 -11.15627 -10.92984 -10.71744 -10.51647 -10.13748 -9.65971 -9.16880 -8.98585 -8.53628 -8.43401 -7.67780 -6.04424 -4.09404 0.91975 0.99721 3.27536 3.30899 3.35531 3.36357 3.41754 3.85456 3.96920 4.39451 4.44144 4.52268 4.60032 4.78180 5.06245 5.12733 5.29417 5.31036 5.41981 5.54068 5.63220 5.72445 5.75934 5.82834 5.91123 5.99015 6.04040 6.22147 6.22704 6.48733 6.72646 7.06218 7.44800 7.53710 7.91608 8.23140 8.40311 8.89054 9.07325 9.55603 11.03651 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.004697 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.449418 B = 5959.991784 C = 6815.765340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.534 6.534 15 C -0.106 4.106 16 C -0.097 4.097 17 C -0.050 4.050 18 C -0.162 4.162 19 C 0.121 3.879 20 F -0.136 7.136 21 C -0.192 4.192 22 C 0.144 3.856 23 F -0.128 7.128 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 -6.091 16.523 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.294 3.706 14 O -0.411 6.411 15 C -0.146 4.146 16 C -0.099 4.099 17 C -0.068 4.068 18 C -0.181 4.181 19 C 0.102 3.898 20 F -0.114 7.114 21 C -0.211 4.211 22 C 0.124 3.876 23 F -0.106 7.106 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.911 -5.333 16.322 17.611 hybrid contribution 0.759 0.038 -0.391 0.855 sum -3.153 -5.295 15.931 17.082 Atomic orbital electron populations 1.22231 0.96774 1.01433 1.02433 1.21435 0.93559 0.84182 1.02695 1.48239 1.63682 1.13272 1.07620 1.19267 0.96244 0.93655 0.78056 1.21384 0.96905 1.31964 1.06291 0.92546 1.24933 0.97811 0.94914 0.96405 1.69922 1.35744 1.33322 1.14370 0.86568 0.84829 0.78222 0.77847 1.20255 1.21173 1.20209 1.20044 0.78906 0.86984 0.84695 1.90698 1.45475 1.17900 1.87067 1.20745 1.04308 0.98216 0.91351 1.19529 0.94060 0.98413 0.97896 1.20766 0.94860 0.97743 0.93439 1.21125 0.99937 0.97406 0.99599 1.17249 0.93735 0.91375 0.87452 1.91508 1.93635 1.70146 1.56148 1.20930 0.97891 1.03068 0.99238 1.17076 0.81170 0.96377 0.92934 1.91521 1.40632 1.95325 1.83161 0.93009 0.92007 0.92135 0.89877 0.91715 0.95001 0.93933 0.92659 0.87766 0.88133 0.83921 0.84094 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.33 2.46 -175.06 -0.43 -12.76 16 4 C 0.25 6.42 5.16 -5.20 -0.03 6.39 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.35 7.67 -10.99 -0.08 10.26 16 14 O -0.53 -13.43 15.61 5.55 0.09 -13.34 16 15 C -0.11 -1.52 4.16 -29.04 -0.12 -1.64 16 16 C -0.10 -1.40 4.38 -104.55 -0.46 -1.86 16 17 C -0.05 -0.62 9.67 -39.60 -0.38 -1.00 16 18 C -0.16 -1.87 10.02 -39.51 -0.40 -2.27 16 19 C 0.12 1.52 7.30 -39.43 -0.29 1.23 16 20 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 21 C -0.19 -2.49 10.01 -39.45 -0.39 -2.88 16 22 C 0.14 2.11 7.24 -39.43 -0.29 1.83 16 23 F -0.13 -1.99 16.57 2.25 0.04 -1.95 16 24 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.04 1.26 7.42 -51.92 -0.39 0.88 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.10 1.19 7.31 -51.93 -0.38 0.81 16 33 H 0.10 1.26 6.83 -51.93 -0.35 0.90 16 34 H 0.14 1.47 8.06 -52.48 -0.42 1.04 16 35 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -33.31 320.62 -6.55 -39.86 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.33 Total: -2.17 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.50 Total: -3.66 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.31 Total: -38.64 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.59 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.31 -6.55 -39.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094817532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.730 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds