Wall clock time and date at job start Tue Mar 31 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47290 * 2 1 4 4 C 1.46500 * 119.99594 * 270.00102 * 3 2 1 5 5 C 1.50697 * 109.47200 * 269.99675 * 4 3 2 6 6 H 1.08003 * 120.00189 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00188 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00086 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 120.00179 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46857 * 59.99980 * 9 7 5 11 11 H 1.48494 * 109.47047 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46838 * 300.00071 * 9 7 5 13 13 C 1.34773 * 120.00270 * 89.99673 * 3 2 1 14 14 O 1.21287 * 120.00152 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99948 * 0.02562 * 13 3 2 16 16 C 1.50700 * 109.47361 * 179.97438 * 15 13 3 17 17 C 1.38224 * 119.99213 * 265.02473 * 16 15 13 18 18 C 1.38187 * 120.05295 * 179.97438 * 17 16 15 19 19 C 1.38492 * 120.02416 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.00943 * 179.97438 * 19 18 17 21 21 C 1.38397 * 119.97529 * 359.72914 * 19 18 17 22 22 C 1.38445 * 119.94721 * 0.52975 * 21 19 18 23 23 F 1.35104 * 120.01039 * 179.74070 * 22 21 19 24 24 H 1.08997 * 109.46734 * 300.00040 * 1 2 3 25 25 H 1.09000 * 109.47277 * 60.00379 * 1 2 3 26 26 H 1.08999 * 109.47456 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46734 * 239.99960 * 2 1 3 28 28 H 1.09001 * 109.46571 * 119.99862 * 2 1 3 29 29 H 1.08997 * 109.47778 * 29.99792 * 4 3 2 30 30 H 1.09008 * 109.46905 * 149.99905 * 4 3 2 31 31 H 0.97004 * 120.00332 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47241 * 59.99623 * 15 13 3 33 33 H 1.08998 * 109.47060 * 299.99849 * 15 13 3 34 34 H 1.08009 * 119.97191 * 359.97414 * 17 16 15 35 35 H 1.07999 * 119.98601 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.03007 * 180.27174 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 3.3497 3.1271 -3.6172 9 14 5.9135 2.0961 -3.4172 10 1 6.1402 0.6394 -3.5955 11 1 6.1609 2.7962 -4.7032 12 1 6.8413 2.6185 -2.3821 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1599 1.1671 15 6 1.9923 1.3060 2.4722 16 6 2.3192 2.2292 3.6177 17 6 3.5672 2.1804 4.2099 18 6 3.8685 3.0267 5.2599 19 6 2.9198 3.9244 5.7205 20 9 3.2145 4.7513 6.7475 21 6 1.6716 3.9777 5.1251 22 6 1.3691 3.1256 4.0767 23 9 0.1492 3.1729 3.4979 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6876 -2.0284 30 1 2.0956 3.1410 -1.1385 31 1 3.6757 3.5176 -4.4432 32 1 2.6228 0.4187 2.5299 33 1 0.9445 1.0115 2.5302 34 1 4.3075 1.4803 3.8516 35 1 4.8441 2.9880 5.7216 36 1 0.9327 4.6804 5.4807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094817532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:06 Heat of formation + Delta-G solvation = -126.297669 kcal Electronic energy + Delta-G solvation = -22054.412988 eV Core-core repulsion = 18366.629828 eV Total energy + Delta-G solvation = -3687.783160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.06081 -50.01889 -40.96331 -39.55926 -36.92780 -34.95669 -33.67676 -31.81554 -31.55974 -29.64492 -27.91059 -24.96721 -24.21752 -24.16651 -22.81752 -19.94390 -19.23543 -18.62067 -18.28270 -17.97945 -17.38830 -16.91410 -16.84682 -16.50554 -16.32167 -16.06800 -15.76279 -15.43928 -14.83038 -14.71057 -14.48402 -14.42987 -13.84402 -13.63979 -13.26672 -13.15369 -12.98830 -12.91385 -12.73055 -12.62047 -12.41600 -12.34899 -12.12511 -11.82681 -11.71579 -10.68259 -10.62980 -10.05760 -9.61833 -9.42200 -8.20758 -6.35907 -0.09759 0.02257 1.37787 1.42173 1.49394 1.85205 2.18027 2.38156 2.58195 2.86451 3.08967 3.38290 3.52889 3.57926 3.83810 3.89127 4.10841 4.17408 4.38940 4.47413 4.51402 4.66461 4.79139 4.83680 4.90955 4.99741 5.00860 5.03924 5.07039 5.22613 5.24508 5.41364 5.59513 5.75873 5.87420 6.07730 6.71569 6.81929 7.29882 7.50225 8.86309 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.004697 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.449418 B = 5959.991784 C = 6815.765340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.262 3.738 5 C -0.540 4.540 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.969 3.031 10 H -0.258 1.258 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.499 3.501 14 O -0.594 6.594 15 C -0.091 4.091 16 C -0.116 4.116 17 C -0.051 4.051 18 C -0.155 4.155 19 C 0.115 3.885 20 F -0.135 7.135 21 C -0.197 4.197 22 C 0.120 3.880 23 F -0.140 7.140 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.019 0.981 30 H -0.008 1.008 31 H 0.266 0.734 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 -8.329 18.010 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.793 3.207 10 H -0.182 1.182 11 H -0.207 1.207 12 H -0.202 1.202 13 C 0.287 3.713 14 O -0.475 6.475 15 C -0.130 4.130 16 C -0.117 4.117 17 C -0.069 4.069 18 C -0.173 4.173 19 C 0.096 3.904 20 F -0.114 7.114 21 C -0.217 4.217 22 C 0.100 3.900 23 F -0.119 7.119 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.037 0.963 30 H 0.010 0.990 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.139 0.861 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.647 -7.627 17.833 19.576 hybrid contribution 0.321 0.769 -0.809 1.162 sum -2.326 -6.858 17.024 18.500 Atomic orbital electron populations 1.22176 0.95009 1.03523 1.01455 1.21798 0.95013 0.81228 1.04368 1.48271 1.63794 1.15218 1.06068 1.18679 0.95414 0.91316 0.80510 1.21690 0.97749 1.31923 1.06503 0.92384 1.25895 1.02458 0.94477 0.96489 1.70061 1.37945 1.34288 1.14843 0.85454 0.78916 0.79097 0.77266 1.18220 1.20664 1.20203 1.21126 0.77299 0.86525 0.86304 1.90662 1.48067 1.20671 1.88081 1.20717 1.06449 0.98603 0.87256 1.19711 0.94897 0.98855 0.98265 1.21109 0.94472 0.98123 0.93226 1.21470 1.00781 0.96149 0.98916 1.17400 0.93857 0.91663 0.87505 1.91511 1.93590 1.70193 1.56098 1.21101 0.98636 1.02989 0.98936 1.17363 0.81196 0.97519 0.93894 1.91482 1.41370 1.95520 1.83514 0.92377 0.94641 0.88422 0.90830 0.87350 0.96262 0.99033 0.92506 0.83898 0.86075 0.81482 0.81240 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.23 16 2 C 0.10 2.82 5.93 86.38 0.51 3.33 16 3 N -0.60 -25.02 2.46 -826.16 -2.03 -27.05 16 4 C 0.26 14.25 5.16 85.63 0.44 14.69 16 5 C -0.54 -30.91 9.39 25.60 0.24 -30.67 16 6 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 9 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.50 20.23 7.67 87.66 0.67 20.90 16 14 O -0.59 -30.79 15.61 -3.05 -0.05 -30.84 16 15 C -0.09 -2.38 4.16 29.10 0.12 -2.26 16 16 C -0.12 -3.13 4.38 -19.82 -0.09 -3.21 16 17 C -0.05 -1.14 9.67 22.25 0.22 -0.92 16 18 C -0.15 -3.18 10.02 22.32 0.22 -2.95 16 19 C 0.12 2.71 7.30 22.37 0.16 2.87 16 20 F -0.14 -3.14 17.27 44.97 0.78 -2.36 16 21 C -0.20 -4.99 10.01 22.36 0.22 -4.77 16 22 C 0.12 3.45 7.24 22.37 0.16 3.61 16 23 F -0.14 -4.38 16.57 44.97 0.74 -3.64 16 24 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 25 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 28 H 0.11 2.18 6.44 -2.39 -0.02 2.17 16 29 H 0.02 1.07 8.07 -2.39 -0.02 1.06 16 30 H -0.01 -0.54 7.42 -2.38 -0.02 -0.56 16 31 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.14 2.59 7.31 -2.39 -0.02 2.58 16 33 H 0.12 2.67 6.83 -2.39 -0.02 2.66 16 34 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -76.46 320.62 6.94 -69.52 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.10 Total: 6.26 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.09 Total: -1.85 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -1.74 Total: -83.71 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.05 Total: -30.84 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 1.52 Total: -6.00 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -76.46 6.94 -69.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094817532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.780 kcal (2) G-P(sol) polarization free energy of solvation -76.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds