Wall clock time and date at job start Tue Mar 31 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47176 * 2 1 4 4 C 1.46499 * 120.00255 * 269.99896 * 3 2 1 5 5 C 1.50696 * 109.47412 * 270.00040 * 4 3 2 6 6 H 1.08002 * 119.99570 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00328 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00367 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99857 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47429 * 89.99533 * 9 7 5 11 11 H 1.48503 * 109.47623 * 209.99616 * 9 7 5 12 12 H 1.48502 * 109.47351 * 329.99800 * 9 7 5 13 13 C 1.34777 * 119.99828 * 90.00524 * 3 2 1 14 14 O 1.21277 * 119.99989 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99963 * 359.97438 * 13 3 2 16 16 C 1.50701 * 109.47139 * 180.02562 * 15 13 3 17 17 C 1.38425 * 120.02136 * 90.00372 * 16 15 13 18 18 F 1.35101 * 120.01402 * 359.70506 * 17 16 15 19 19 C 1.38476 * 119.97328 * 179.97438 * 17 16 15 20 20 C 1.38207 * 120.02410 * 0.02562 * 19 17 16 21 21 C 1.38207 * 120.05360 * 359.97438 * 20 19 17 22 22 C 1.38412 * 120.02814 * 269.98005 * 16 15 13 23 23 F 1.35096 * 120.01191 * 0.02562 * 22 16 15 24 24 H 1.08998 * 109.47144 * 59.99785 * 1 2 3 25 25 H 1.08998 * 109.47704 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47086 * 300.00224 * 1 2 3 27 27 H 1.09006 * 109.47182 * 240.00302 * 2 1 3 28 28 H 1.08998 * 109.47144 * 120.00215 * 2 1 3 29 29 H 1.09002 * 109.46609 * 30.00393 * 4 3 2 30 30 H 1.08994 * 109.47037 * 150.00069 * 4 3 2 31 31 H 0.97004 * 120.00063 * 180.02562 * 8 7 5 32 32 H 1.09008 * 109.46849 * 60.00905 * 15 13 3 33 33 H 1.09006 * 109.47704 * 300.00747 * 15 13 3 34 34 H 1.08001 * 119.98752 * 179.97438 * 19 17 16 35 35 H 1.08000 * 119.97200 * 180.02562 * 20 19 17 36 36 H 1.07995 * 119.99247 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3897 -2.8779 8 7 5.3910 2.1827 -3.2578 9 14 3.0128 3.4353 -3.9291 10 1 3.1162 4.8556 -3.5080 11 1 3.4057 3.3123 -5.3559 12 1 1.6130 2.9694 -3.7592 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 6 2.3174 2.2296 3.6178 17 6 1.3373 3.0534 4.1438 18 9 0.0893 3.0344 3.6266 19 6 1.6378 3.9011 5.1967 20 6 2.9160 3.9252 5.7220 21 6 3.8954 3.1032 5.1976 22 6 3.5970 2.2543 4.1449 23 9 4.5545 1.4508 3.6325 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0955 3.1410 -1.1383 31 1 5.7171 2.5732 -4.0837 32 1 2.6214 0.4185 2.5301 33 1 0.9433 1.0123 2.5299 34 1 0.8734 4.5443 5.6071 35 1 3.1493 4.5864 6.5434 36 1 4.8939 3.1231 5.6085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094817533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:09 Heat of formation + Delta-G solvation = -100.359047 kcal Electronic energy + Delta-G solvation = -22477.027282 eV Core-core repulsion = 18790.368906 eV Total energy + Delta-G solvation = -3686.658377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.98617 -48.89394 -39.51199 -38.45897 -35.40592 -33.13919 -32.48351 -30.33184 -30.31211 -28.59138 -26.82098 -23.02693 -22.93347 -22.86423 -21.52969 -18.46949 -18.07087 -17.35741 -16.89593 -16.70694 -16.15070 -15.67955 -15.56182 -15.24305 -15.19292 -14.64313 -14.38297 -13.98177 -13.47963 -13.46232 -13.22914 -12.77414 -12.62385 -12.33387 -12.13904 -11.96018 -11.83447 -11.58290 -11.45994 -11.24586 -10.95054 -10.69536 -10.47936 -10.14228 -9.52853 -9.24118 -8.76423 -8.74635 -8.56942 -7.72207 -6.06648 -4.05225 0.94395 0.96297 3.26275 3.30408 3.32661 3.36419 3.38407 3.85309 3.92361 4.39953 4.41249 4.44242 4.62706 4.74029 5.04286 5.08320 5.26240 5.28186 5.36707 5.49219 5.56769 5.69458 5.78548 5.87793 5.88708 5.98113 6.03825 6.07823 6.15812 6.41438 6.69643 6.75294 6.96330 7.35342 7.63010 8.23971 8.48945 8.93237 8.99183 9.53610 11.06792 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.005306 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.201024 B = 5276.170265 C = 5706.608228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.591 5.591 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.513 3.487 14 O -0.534 6.534 15 C -0.106 4.106 16 C -0.128 4.128 17 C 0.140 3.860 18 F -0.130 7.130 19 C -0.166 4.166 20 C -0.067 4.067 21 C -0.165 4.165 22 C 0.144 3.856 23 F -0.125 7.125 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.489 -2.261 17.489 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.323 5.323 4 C 0.096 3.904 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.300 3.700 14 O -0.411 6.411 15 C -0.145 4.145 16 C -0.131 4.131 17 C 0.120 3.880 18 F -0.108 7.108 19 C -0.185 4.185 20 C -0.085 4.085 21 C -0.184 4.184 22 C 0.125 3.875 23 F -0.103 7.103 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.152 -1.647 17.257 19.603 hybrid contribution -0.447 0.326 -0.945 1.095 sum -9.600 -1.320 16.312 18.973 Atomic orbital electron populations 1.22240 0.96690 1.01641 1.02317 1.21475 0.93461 0.83785 1.03226 1.47901 1.64094 1.13427 1.06855 1.19653 0.97351 0.93370 0.79998 1.21334 0.95331 1.32874 1.07092 0.90736 1.24850 0.94992 0.95799 0.97340 1.69901 1.15132 1.45023 1.23556 0.86860 0.81496 0.81634 0.79758 1.19938 1.21047 1.19069 1.19997 0.78505 0.86909 0.84638 1.90681 1.45339 1.17997 1.87061 1.20641 1.04527 0.98377 0.91001 1.19399 0.92789 1.01394 0.99487 1.17142 0.79668 0.96948 0.94242 1.91506 1.38112 1.95257 1.85965 1.21118 0.98741 1.00900 0.97778 1.20777 0.91402 0.97291 0.98993 1.21165 1.01527 0.98018 0.97654 1.17187 0.84774 0.91636 0.93946 1.91548 1.61962 1.70829 1.86008 0.92173 0.91879 0.92926 0.89565 0.91375 0.95184 0.94637 0.92587 0.87531 0.87739 0.84183 0.84088 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.15 0.38 -1.82 16 2 C 0.10 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.59 -12.51 2.46 -175.07 -0.43 -12.94 16 4 C 0.22 5.44 4.23 -5.20 -0.02 5.42 16 5 C -0.53 -15.49 9.94 -34.44 -0.34 -15.83 16 6 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 9 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 13 C 0.51 10.93 7.67 -10.99 -0.08 10.85 16 14 O -0.53 -13.69 15.61 5.56 0.09 -13.61 16 15 C -0.11 -1.67 4.03 -29.04 -0.12 -1.79 16 16 C -0.13 -2.00 4.38 -104.49 -0.46 -2.46 16 17 C 0.14 1.98 7.24 -39.42 -0.29 1.70 16 18 F -0.13 -1.91 16.48 2.25 0.04 -1.87 16 19 C -0.17 -1.86 10.03 -39.50 -0.40 -2.26 16 20 C -0.07 -0.66 10.04 -39.60 -0.40 -1.06 16 21 C -0.16 -1.94 10.03 -39.50 -0.40 -2.33 16 22 C 0.14 2.17 7.24 -39.43 -0.29 1.89 16 23 F -0.13 -2.08 16.48 2.25 0.04 -2.05 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.65 7.22 -51.93 -0.37 0.28 16 27 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 28 H 0.07 0.91 6.44 -51.93 -0.33 0.58 16 29 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 30 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.11 1.52 6.90 -51.92 -0.36 1.16 16 33 H 0.10 1.39 6.69 -51.93 -0.35 1.04 16 34 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -35.45 315.78 -6.19 -41.64 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.26 Total: -1.88 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.53 Total: -4.02 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.34 Total: -40.29 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.07 Total: -3.92 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.45 -6.19 -41.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094817533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.719 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds