Wall clock time and date at job start Tue Mar 31 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47564 * 2 1 4 4 C 1.50701 * 109.47190 * 120.00238 * 2 1 3 5 5 O 1.21286 * 120.00203 * 119.99480 * 4 2 1 6 6 N 1.34774 * 119.99930 * 300.00224 * 4 2 1 7 7 C 1.46504 * 119.99856 * 359.97438 * 6 4 2 8 8 C 1.46501 * 120.00425 * 179.97438 * 6 4 2 9 9 C 1.50696 * 109.47328 * 89.99447 * 8 6 4 10 10 H 1.08006 * 119.99610 * 0.02562 * 9 8 6 11 11 C 1.37872 * 120.00071 * 179.97438 * 9 8 6 12 12 N 1.31519 * 120.00203 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00157 * 0.02562 * 11 9 8 14 14 H 1.48512 * 109.46863 * 89.99833 * 13 11 9 15 15 H 1.48495 * 109.47205 * 209.99341 * 13 11 9 16 16 H 1.48500 * 109.47190 * 329.99964 * 13 11 9 17 17 C 1.50705 * 109.47314 * 239.99967 * 2 1 3 18 18 C 1.38423 * 120.02305 * 120.00237 * 17 2 1 19 19 F 1.35094 * 120.01576 * 0.04447 * 18 17 2 20 20 C 1.38470 * 119.97194 * 180.02562 * 18 17 2 21 21 C 1.38215 * 120.02840 * 359.97438 * 20 18 17 22 22 C 1.38211 * 120.04705 * 359.97438 * 21 20 18 23 23 C 1.38417 * 120.02582 * 300.02712 * 17 2 1 24 24 F 1.35097 * 120.01122 * 359.97438 * 23 17 2 25 25 H 1.09013 * 109.46682 * 59.99805 * 1 2 3 26 26 H 1.08997 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47328 * 300.00371 * 1 2 3 28 28 H 1.08995 * 109.47023 * 90.00289 * 7 6 4 29 29 H 1.08999 * 109.46927 * 209.99935 * 7 6 4 30 30 H 1.08999 * 109.46925 * 329.99778 * 7 6 4 31 31 H 1.09000 * 109.47539 * 209.99970 * 8 6 4 32 32 H 1.09003 * 109.46527 * 329.99929 * 8 6 4 33 33 H 0.97000 * 120.00468 * 180.02562 * 12 11 9 34 34 H 1.07998 * 119.99021 * 179.97438 * 20 18 17 35 35 H 1.07993 * 119.97794 * 179.72715 * 21 20 18 36 36 H 1.07993 * 119.98298 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 0.8648 0.9414 2.5890 8 6 2.1945 -0.9410 3.6507 9 6 3.5222 -0.3581 4.0612 10 1 3.9588 0.4468 3.4885 11 6 4.1791 -0.8517 5.1683 12 7 5.3380 -0.3434 5.5263 13 14 3.4236 -2.2434 6.1593 14 1 3.8837 -3.5458 5.6138 15 1 3.8436 -2.1251 7.5787 16 1 1.9432 -2.1657 6.0729 17 6 2.0323 -0.7104 -1.2305 18 6 2.8282 -0.0382 -2.1419 19 9 3.1558 1.2549 -1.9284 20 6 3.2888 -0.6918 -3.2724 21 6 2.9546 -2.0151 -3.4907 22 6 2.1609 -2.6875 -2.5808 23 6 1.6978 -2.0355 -1.4503 24 9 0.9212 -2.6927 -0.5616 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.1832 0.6438 2.6221 29 1 1.1227 1.4665 3.5086 30 1 1.0288 1.6002 1.7362 31 1 1.4765 -0.8154 4.4611 32 1 2.3152 -2.0023 3.4334 33 1 5.8004 -0.6909 6.3050 34 1 3.9095 -0.1675 -3.9839 35 1 3.3106 -2.5227 -4.3749 36 1 1.9000 -3.7213 -2.7526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122177366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:27 Heat of formation + Delta-G solvation = -89.954660 kcal Electronic energy + Delta-G solvation = -22797.677843 eV Core-core repulsion = 19111.470634 eV Total energy + Delta-G solvation = -3686.207209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.00163 -48.82240 -39.71912 -38.41460 -34.98344 -34.23380 -32.43578 -30.29265 -29.80486 -28.13215 -26.25055 -24.49586 -22.99333 -22.83327 -21.24470 -18.66443 -18.05575 -17.48659 -16.91843 -16.25477 -16.09360 -15.66954 -15.49245 -15.20478 -15.16049 -14.71434 -14.36664 -14.13310 -13.51676 -13.31416 -13.14239 -12.73003 -12.39988 -12.35108 -12.08397 -12.04487 -11.86946 -11.82196 -11.44071 -11.26164 -10.87155 -10.81432 -10.50807 -10.12688 -9.53091 -9.10408 -8.77782 -8.70637 -8.57581 -7.69764 -6.07346 -4.06124 0.95582 1.01013 3.28713 3.30364 3.34948 3.36548 3.38353 3.83700 3.94830 4.38236 4.40821 4.43657 4.64921 4.73306 5.02757 5.09541 5.20808 5.25772 5.30145 5.52998 5.68486 5.71755 5.75852 5.83692 5.90975 5.96169 5.98427 6.09757 6.12427 6.26867 6.68870 6.76955 6.95850 7.33577 7.62098 8.22895 8.48094 8.92671 8.98377 9.52792 11.06098 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.005154 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.247799 B = 5431.277352 C = 5482.906825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.074 4.074 3 H 0.109 0.891 4 C 0.516 3.484 5 O -0.531 6.531 6 N -0.594 5.594 7 C 0.080 3.920 8 C 0.216 3.784 9 C -0.529 4.529 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.266 1.266 17 C -0.132 4.132 18 C 0.134 3.866 19 F -0.130 7.130 20 C -0.170 4.170 21 C -0.065 4.065 22 C -0.170 4.170 23 C 0.164 3.836 24 F -0.121 7.121 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 0.441 -17.352 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.096 4.096 3 H 0.127 0.873 4 C 0.301 3.699 5 O -0.407 6.407 6 N -0.326 5.326 7 C -0.064 4.064 8 C 0.096 3.904 9 C -0.567 4.567 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.190 1.190 17 C -0.134 4.134 18 C 0.115 3.885 19 F -0.109 7.109 20 C -0.189 4.189 21 C -0.083 4.083 22 C -0.189 4.189 23 C 0.145 3.855 24 F -0.099 7.099 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.417 -0.075 -17.182 20.093 hybrid contribution -0.154 -0.429 0.890 1.000 sum -10.571 -0.504 -16.292 19.427 Atomic orbital electron populations 1.22104 0.91962 1.03832 1.03497 1.20194 0.97984 1.00732 0.90668 0.87323 1.19965 0.80876 0.84988 0.84040 1.90678 1.37452 1.26561 1.86055 1.47723 1.50002 1.28362 1.06500 1.21843 0.93582 0.87955 1.03010 1.19674 0.95318 0.93723 0.81699 1.21332 1.03116 1.20303 1.11968 0.90800 1.24856 0.94637 0.96464 0.97049 1.69901 1.14781 1.42367 1.26571 0.86846 0.80053 0.83285 0.79482 1.19911 1.21044 1.19046 1.19446 1.02156 0.94243 0.97527 1.17162 0.97108 0.79174 0.95092 1.91505 1.90705 1.33901 1.94743 1.21095 1.03917 0.96060 0.97814 1.20773 0.95671 0.93198 0.98701 1.21166 1.01731 1.01465 0.94535 1.17078 0.91924 0.89045 0.87502 1.91515 1.71341 1.80219 1.66829 0.91743 0.91377 0.90028 0.93198 0.90504 0.91956 0.95146 0.94518 0.92571 0.84166 0.84146 0.84192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.62 37.15 0.32 -1.66 16 2 C -0.07 -1.20 1.99 -92.92 -0.18 -1.39 16 3 H 0.11 1.66 6.39 -51.93 -0.33 1.32 16 4 C 0.52 11.01 6.52 -10.99 -0.07 10.94 16 5 O -0.53 -13.52 14.14 5.55 0.08 -13.44 16 6 N -0.59 -12.65 2.86 -182.95 -0.52 -13.17 16 7 C 0.08 1.25 8.80 59.85 0.53 1.78 16 8 C 0.22 5.44 4.23 -5.19 -0.02 5.42 16 9 C -0.53 -15.55 9.94 -34.44 -0.34 -15.89 16 10 H 0.07 2.39 8.06 -52.48 -0.42 1.96 16 11 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 12 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 13 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 14 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 17 C -0.13 -2.08 4.41 -104.49 -0.46 -2.54 16 18 C 0.13 1.91 7.25 -39.43 -0.29 1.62 16 19 F -0.13 -1.90 16.19 2.25 0.04 -1.86 16 20 C -0.17 -1.91 10.02 -39.50 -0.40 -2.31 16 21 C -0.07 -0.66 10.04 -39.60 -0.40 -1.05 16 22 C -0.17 -2.04 10.03 -39.50 -0.40 -2.44 16 23 C 0.16 2.53 6.13 -39.43 -0.24 2.29 16 24 F -0.12 -2.06 13.81 2.25 0.03 -2.03 16 25 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.07 0.92 6.31 -51.93 -0.33 0.59 16 27 H 0.08 0.93 4.53 -51.93 -0.24 0.69 16 28 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 29 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.06 0.83 6.01 -51.93 -0.31 0.51 16 31 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 32 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -35.42 303.53 -5.74 -41.16 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.99 Total: -1.97 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.05 Total: -3.19 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.25 Total: -40.54 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.07 Total: -3.89 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.42 -5.74 -41.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122177366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.796 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds