Wall clock time and date at job start Tue Mar 31 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46898 * 110.99994 * 58.95482 * 12 2 1 14 14 C 1.46897 * 111.00047 * 294.99841 * 12 2 1 15 15 C 1.52998 * 109.47450 * 189.99994 * 14 12 2 16 16 S 1.81396 * 109.47691 * 180.02562 * 15 14 12 17 17 C 1.76189 * 103.00214 * 180.02562 * 16 15 14 18 18 C 1.38941 * 120.05543 * 359.72351 * 17 16 15 19 19 C 1.38109 * 119.94348 * 179.72367 * 18 17 16 20 20 C 1.38481 * 120.05367 * 0.55358 * 19 18 17 21 21 F 1.35096 * 119.94463 * 179.70528 * 20 19 18 22 22 C 1.38482 * 120.10843 * 359.72357 * 20 19 18 23 23 C 1.38096 * 120.05612 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 26 26 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 27 27 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 28 28 H 1.09001 * 109.46769 * 60.00231 * 13 12 2 29 29 H 1.09001 * 109.47197 * 179.97438 * 13 12 2 30 30 H 1.08992 * 109.47280 * 300.00119 * 13 12 2 31 31 H 1.08996 * 109.47679 * 310.00410 * 14 12 2 32 32 H 1.09002 * 109.47046 * 70.00058 * 14 12 2 33 33 H 1.08996 * 109.47019 * 300.00820 * 15 14 12 34 34 H 1.09002 * 109.46943 * 60.00001 * 15 14 12 35 35 H 1.07998 * 120.02593 * 0.02562 * 18 17 16 36 36 H 1.07994 * 119.96852 * 180.25868 * 19 18 17 37 37 H 1.08001 * 119.96829 * 179.97438 * 22 20 19 38 38 H 1.08004 * 120.02487 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 1.5284 -2.0761 1.2458 14 6 1.6488 0.0390 2.4180 15 6 2.3789 -0.5664 3.6186 16 16 1.9203 0.3365 5.1236 17 6 2.8431 -0.4884 6.3774 18 6 3.6606 -1.5622 6.0471 19 6 4.3873 -2.2035 7.0310 20 6 4.2929 -1.7845 8.3475 21 9 5.0002 -2.4172 9.3090 22 6 3.4743 -0.7181 8.6800 23 6 2.7505 -0.0696 7.6990 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.9111 -0.5221 -4.4375 28 1 1.8764 -2.6150 0.3646 29 1 1.9061 -2.5659 2.1434 30 1 0.4386 -2.0743 1.2638 31 1 1.9297 1.0869 2.3126 32 1 0.5723 -0.0346 2.5725 33 1 2.0979 -1.6142 3.7240 34 1 3.4554 -0.4927 3.4641 35 1 3.7314 -1.8919 5.0212 36 1 5.0261 -3.0355 6.7741 37 1 3.4021 -0.3934 9.7075 38 1 2.1119 0.7618 7.9589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123737672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:01 Heat of formation + Delta-G solvation = -7.315416 kcal Electronic energy + Delta-G solvation = -19187.489655 eV Core-core repulsion = 16071.079129 eV Total energy + Delta-G solvation = -3116.410526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.12550 -39.04780 -37.78719 -33.19755 -31.73097 -31.10365 -30.75374 -28.84482 -25.76352 -25.27516 -23.44571 -23.04595 -21.79972 -19.35449 -18.14685 -17.46862 -16.72025 -16.55917 -15.83855 -15.70053 -15.17737 -15.04714 -14.73312 -14.08051 -13.92153 -13.60205 -13.56885 -13.35244 -12.98851 -12.47332 -12.34759 -12.19799 -12.02330 -11.52161 -11.42174 -11.23476 -11.02105 -10.78623 -10.34797 -10.30974 -10.07408 -9.75588 -9.55838 -9.47441 -9.10776 -8.64103 -7.55286 -7.47227 -6.11875 -4.10845 0.72504 0.89239 1.32791 2.29268 3.19851 3.21931 3.32390 3.34988 3.98545 4.34778 4.38828 4.53665 4.70944 4.87629 4.92192 5.00755 5.11133 5.22397 5.39093 5.52611 5.58142 5.80143 5.84502 5.85906 5.88886 5.92199 6.01729 6.15286 6.20724 6.24258 6.47172 6.50009 6.61690 6.82439 7.11329 7.53083 7.80012 7.94521 8.57526 8.94481 9.49644 11.01030 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.040033 B = 0.003047 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.252974 B = 9188.310131 C = 9644.891954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.182 3.818 3 H 0.041 0.959 4 C -0.505 4.505 5 H 0.083 0.917 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.268 1.268 11 H -0.296 1.296 12 N -0.520 5.520 13 C 0.028 3.972 14 C 0.066 3.934 15 C -0.101 4.101 16 S -0.110 6.110 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.131 4.131 20 C 0.085 3.915 21 F -0.141 7.141 22 C -0.135 4.135 23 C -0.076 4.076 24 H 0.057 0.943 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.021 0.979 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 0.138 22.177 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.075 3.925 3 H 0.059 0.941 4 C -0.543 4.543 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.193 1.193 11 H -0.224 1.224 12 N -0.244 5.244 13 C -0.120 4.120 14 C -0.064 4.064 15 C -0.249 4.249 16 S 0.134 5.866 17 C -0.202 4.202 18 C -0.129 4.129 19 C -0.152 4.152 20 C 0.063 3.937 21 F -0.120 7.120 22 C -0.156 4.156 23 C -0.100 4.100 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.279 1.067 21.929 21.957 hybrid contribution -0.535 -0.399 -0.119 0.678 sum -0.256 0.668 21.810 21.821 Atomic orbital electron populations 1.22833 1.01617 1.01135 0.99071 1.19803 0.88790 0.95388 0.88555 0.94082 1.20918 1.31726 1.13919 0.87749 0.89920 1.24909 0.95844 0.96576 0.95799 1.69872 1.45538 1.40353 0.97912 0.86892 0.80522 0.83892 0.77049 1.20759 1.19288 1.22352 1.62203 1.59276 1.02119 1.00763 1.22366 0.97335 0.90603 1.01723 1.21738 0.96845 0.98679 0.89114 1.23839 1.05300 1.02081 0.93721 1.85498 1.56722 1.44563 0.99770 1.21888 1.01231 0.99467 0.97581 1.21173 0.96389 0.95212 1.00142 1.21077 1.01327 1.01619 0.91139 1.17685 0.95490 0.94690 0.85829 1.91496 1.76730 1.81084 1.62674 1.21052 0.97794 0.96004 1.00729 1.20625 0.99262 0.99895 0.90198 0.92432 0.95185 0.93570 0.92554 0.89852 0.93652 0.96023 0.90386 0.94363 0.89223 0.88359 0.84424 0.84358 0.84341 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.95 7.98 37.16 0.30 -3.66 16 2 C 0.18 4.14 1.93 -68.86 -0.13 4.00 16 3 H 0.04 0.97 7.09 -51.93 -0.37 0.61 16 4 C -0.50 -13.64 8.52 -34.44 -0.29 -13.94 16 5 H 0.08 2.43 6.99 -52.49 -0.37 2.06 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 8 Si 0.89 21.46 24.37 -169.99 -4.14 17.31 16 9 H -0.28 -6.65 6.88 56.52 0.39 -6.26 16 10 H -0.27 -6.20 6.52 56.52 0.37 -5.83 16 11 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 12 N -0.52 -10.03 4.74 -236.29 -1.12 -11.15 16 13 C 0.03 0.50 8.70 60.06 0.52 1.02 16 14 C 0.07 1.04 4.40 -3.83 -0.02 1.02 16 15 C -0.10 -1.29 4.26 37.16 0.16 -1.13 16 16 S -0.11 -1.31 21.92 -107.50 -2.36 -3.67 16 17 C -0.09 -0.96 6.11 -39.06 -0.24 -1.20 16 18 C -0.11 -1.10 9.36 -39.37 -0.37 -1.46 16 19 C -0.13 -1.28 10.02 -39.54 -0.40 -1.67 16 20 C 0.09 0.86 7.30 -39.40 -0.29 0.57 16 21 F -0.14 -1.49 17.26 2.25 0.04 -1.45 16 22 C -0.14 -1.21 10.02 -39.54 -0.40 -1.61 16 23 C -0.08 -0.72 9.79 -39.37 -0.39 -1.11 16 24 H 0.06 1.19 6.39 -51.93 -0.33 0.86 16 25 H 0.03 0.55 6.75 -51.93 -0.35 0.20 16 26 H 0.05 1.02 3.28 -51.93 -0.17 0.85 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.08 1.67 6.53 -51.93 -0.34 1.33 16 29 H 0.04 0.67 6.30 -51.93 -0.33 0.34 16 30 H 0.02 0.37 6.28 -51.93 -0.33 0.05 16 31 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 32 H 0.04 0.60 6.94 -51.93 -0.36 0.24 16 33 H 0.09 1.09 6.07 -51.93 -0.32 0.77 16 34 H 0.10 1.26 7.76 -51.92 -0.40 0.86 16 35 H 0.14 1.35 5.88 -52.49 -0.31 1.04 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -29.00 313.32 -8.55 -37.55 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.83 Total: 0.06 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.64 Total: -17.29 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.35 Total: -37.25 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.31 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.36 Total: -3.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.00 -8.55 -37.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123737672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.239 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds