Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99682 * 2 1 4 4 H 1.48500 * 109.47121 * 269.99776 * 3 2 1 5 5 H 1.48501 * 109.47179 * 29.99684 * 3 2 1 6 6 H 1.48505 * 109.46963 * 149.99712 * 3 2 1 7 7 C 1.37870 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00140 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00151 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47293 * 180.02562 * 10 9 7 12 12 N 1.46509 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.29663 * 119.99868 * 115.00265 * 12 11 10 14 14 C 1.46908 * 119.99521 * 179.97438 * 13 12 11 15 15 C 1.39567 * 120.73273 * 359.97438 * 14 13 12 16 16 O 1.35625 * 119.80108 * 359.97438 * 15 14 13 17 17 C 1.39518 * 120.39988 * 179.72262 * 15 14 13 18 18 C 1.35841 * 121.78185 * 0.29833 * 17 15 14 19 19 C 1.40648 * 120.80064 * 359.97438 * 18 17 15 20 20 C 1.40516 * 121.23950 * 179.97438 * 19 18 17 21 21 C 1.36184 * 119.65439 * 179.91362 * 20 19 18 22 22 C 1.39257 * 120.99447 * 0.09255 * 21 20 19 23 23 C 1.36332 * 120.88996 * 359.92865 * 22 21 20 24 24 C 1.39995 * 119.62279 * 0.02562 * 23 22 21 25 25 H 0.96996 * 120.00175 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46721 * 60.00316 * 9 7 2 27 27 H 1.09003 * 109.47204 * 300.00545 * 9 7 2 28 28 H 1.09003 * 109.46855 * 60.00455 * 10 9 7 29 29 H 1.09003 * 109.47409 * 300.00476 * 10 9 7 30 30 H 1.08996 * 109.47353 * 60.00273 * 11 10 9 31 31 H 1.08995 * 109.47310 * 300.00152 * 11 10 9 32 32 H 1.07991 * 120.00328 * 359.97438 * 13 12 11 33 33 H 0.96696 * 114.00085 * 269.72849 * 16 15 14 34 34 H 1.08004 * 119.10898 * 180.27145 * 17 15 14 35 35 H 1.08000 * 119.60314 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.17086 * 359.95683 * 20 19 18 37 37 H 1.07992 * 119.50241 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.55498 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.18835 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5516 -2.6363 0.0014 12 7 6.0400 -4.0176 0.0022 13 6 6.7036 -4.4711 -1.0153 14 6 7.1938 -5.8560 -1.0142 15 6 6.9544 -6.6965 0.0739 16 8 6.2623 -6.2330 1.1442 17 6 7.4182 -8.0123 0.0652 18 6 8.1160 -8.5180 -0.9849 19 6 8.3976 -7.7245 -2.1115 20 6 9.1192 -8.2379 -3.2025 21 6 9.3722 -7.4414 -4.2778 22 6 8.9280 -6.1220 -4.3133 23 6 8.2257 -5.5917 -3.2720 24 6 7.9471 -6.3827 -2.1511 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8746 -0.6807 -0.8905 28 1 3.6580 -3.1512 -0.8880 29 1 3.6586 -3.1493 0.8920 30 1 5.9149 -2.1217 0.8909 31 1 5.9149 -2.1234 -0.8890 32 1 6.8960 -3.8309 -1.8634 33 1 6.8171 -5.8351 1.8290 34 1 7.2173 -8.6459 0.9164 35 1 8.4588 -9.5417 -0.9544 36 1 9.4706 -9.2590 -3.1887 37 1 9.9265 -7.8386 -5.1151 38 1 9.1420 -5.5109 -5.1776 39 1 7.8863 -4.5672 -3.3117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171417239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = 14.577981 kcal Electronic energy + Delta-G solvation = -20421.307330 eV Core-core repulsion = 17293.862527 eV Total energy + Delta-G solvation = -3127.444803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52051 -38.26259 -36.51112 -35.27520 -33.96908 -32.65838 -31.43825 -30.07225 -29.12723 -27.16035 -24.34951 -23.37312 -22.97299 -22.00673 -20.10794 -19.71083 -18.73235 -17.49608 -16.92114 -16.61934 -15.87867 -15.19870 -15.10784 -14.64900 -14.39582 -14.08601 -13.91617 -13.65083 -13.59489 -13.18428 -12.92173 -12.61139 -12.46451 -11.86723 -11.60913 -11.44949 -11.25211 -11.16973 -10.91394 -10.70464 -10.53812 -10.07366 -9.82477 -9.74403 -9.38212 -9.16592 -8.96566 -8.70737 -8.52921 -7.82266 -6.02771 -4.00916 0.11128 0.78693 1.49098 2.45799 2.92695 3.30630 3.37898 3.41455 3.86891 3.99553 4.24398 4.45725 4.45855 4.58454 4.67080 4.77805 4.91370 5.07761 5.10897 5.19916 5.30398 5.39990 5.50891 5.65033 5.74057 5.82285 5.87036 5.96146 6.01863 6.07067 6.24700 6.29114 6.30581 6.51748 6.53388 6.67895 6.69909 6.89305 7.31204 7.41786 7.76291 7.79026 7.97246 8.56265 9.02769 9.59188 11.10845 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.003039 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.191804 B = 9211.115033 C = 9894.690885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.091 4.091 11 C 0.029 3.971 12 N -0.471 5.471 13 C 0.150 3.850 14 C -0.085 4.085 15 C 0.155 3.845 16 O -0.468 6.468 17 C -0.143 4.143 18 C -0.083 4.083 19 C -0.065 4.065 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.109 4.109 24 C -0.017 4.017 25 H 0.263 0.737 26 H 0.017 0.983 27 H 0.010 0.990 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.097 0.903 33 H 0.390 0.610 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.577 -16.896 -5.319 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.129 4.129 11 C -0.100 4.100 12 N -0.179 5.179 13 C -0.059 4.059 14 C -0.086 4.086 15 C 0.106 3.894 16 O -0.278 6.278 17 C -0.161 4.161 18 C -0.102 4.102 19 C -0.065 4.065 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.019 4.019 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.248 0.752 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.511 -17.044 -4.708 28.625 hybrid contribution 0.814 1.639 -0.542 1.909 sum 23.325 -15.405 -5.250 28.442 Atomic orbital electron populations 1.69918 1.06298 1.26861 1.51214 1.25039 0.94748 0.99164 0.94607 0.86759 0.80355 0.83603 0.78446 1.20338 1.21341 1.19030 1.21131 0.89402 0.94549 1.50678 0.90997 1.19565 0.97322 0.91909 0.96185 1.21420 0.89580 0.99905 1.01969 1.22727 0.98812 0.87329 1.01151 1.72015 1.05246 1.15087 1.25563 1.23713 0.94532 0.93042 0.94597 1.20205 1.00681 0.92967 0.94782 1.18633 0.91179 0.90872 0.88723 1.84794 1.34345 1.79335 1.29300 1.21068 0.99266 0.95657 1.00147 1.20863 0.97686 0.99388 0.92311 1.17978 0.99934 0.93124 0.95475 1.21015 0.98006 0.99763 0.92999 1.20839 1.00603 0.94246 0.98524 1.20916 0.97817 0.95561 0.98534 1.20965 0.98822 1.00055 0.92868 1.18779 0.96706 0.93005 0.93395 0.92735 0.96479 0.97211 0.92991 0.91646 0.89594 0.94358 0.88582 0.75199 0.85136 0.85246 0.85504 0.85980 0.85788 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.56 13.96 55.43 0.77 -27.78 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -15.37 9.66 -34.44 -0.33 -15.71 16 8 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.01 -0.29 4.04 -27.89 -0.11 -0.41 16 10 C -0.09 -1.94 5.48 -26.74 -0.15 -2.09 16 11 C 0.03 0.50 6.39 -4.04 -0.03 0.47 16 12 N -0.47 -7.69 8.39 -59.20 -0.50 -8.19 16 13 C 0.15 2.12 10.09 -14.96 -0.15 1.97 16 14 C -0.08 -1.10 6.06 -102.70 -0.62 -1.72 16 15 C 0.15 1.93 6.72 -38.61 -0.26 1.67 16 16 O -0.47 -6.18 11.37 -18.57 -0.21 -6.39 16 17 C -0.14 -1.43 9.81 -39.96 -0.39 -1.82 16 18 C -0.08 -0.74 9.70 -39.53 -0.38 -1.13 16 19 C -0.07 -0.66 5.74 -106.85 -0.61 -1.27 16 20 C -0.10 -0.81 9.77 -39.46 -0.39 -1.19 16 21 C -0.12 -0.95 9.95 -39.94 -0.40 -1.35 16 22 C -0.11 -0.92 9.96 -39.89 -0.40 -1.32 16 23 C -0.11 -1.10 9.46 -39.61 -0.37 -1.47 16 24 C -0.02 -0.20 5.90 -104.77 -0.62 -0.82 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 27 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 32 H 0.10 1.19 6.22 -52.49 -0.33 0.86 16 33 H 0.39 3.73 9.06 45.56 0.41 4.14 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 1.16 6.43 -52.49 -0.34 0.82 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -34.28 331.30 -9.31 -43.58 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.39 Total: 0.67 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -5.31 Total: -24.31 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.28 Total: -35.97 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.21 Total: -6.39 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.28 -9.31 -43.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171417239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.159 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds