Wall clock time and date at job start Tue Mar 31 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47131 * 2 1 4 4 C 1.46503 * 119.99665 * 269.99915 * 3 2 1 5 5 C 1.50702 * 109.47037 * 269.99603 * 4 3 2 6 6 H 1.08003 * 120.00060 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00348 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00751 * 180.02562 * 7 5 4 9 9 Si 1.86809 * 119.99894 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.46969 * 89.99619 * 9 7 5 11 11 H 1.48501 * 109.46982 * 209.99885 * 9 7 5 12 12 H 1.48495 * 109.46751 * 329.99923 * 9 7 5 13 13 C 1.34777 * 120.00466 * 89.99763 * 3 2 1 14 14 O 1.21591 * 120.00251 * 180.02562 * 13 3 2 15 15 C 1.47546 * 119.99839 * 359.97438 * 13 3 2 16 16 C 1.39915 * 120.18699 * 90.25439 * 15 13 3 17 17 F 1.35097 * 120.09961 * 359.97438 * 16 15 13 18 18 C 1.38201 * 119.80589 * 180.23413 * 16 15 13 19 19 C 1.38329 * 120.18831 * 359.50993 * 18 16 15 20 20 C 1.38284 * 120.38347 * 0.25785 * 19 18 16 21 21 C 1.50704 * 119.90499 * 179.97438 * 20 19 18 22 22 C 1.38237 * 120.19202 * 359.97438 * 20 19 18 23 23 F 1.35102 * 120.10118 * 180.02562 * 22 20 19 24 24 H 1.09003 * 109.47243 * 300.00221 * 1 2 3 25 25 H 1.08993 * 109.47002 * 60.00315 * 1 2 3 26 26 H 1.08999 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47415 * 239.99076 * 2 1 3 28 28 H 1.09008 * 109.46954 * 119.99200 * 2 1 3 29 29 H 1.08993 * 109.47555 * 29.99711 * 4 3 2 30 30 H 1.08998 * 109.47329 * 150.00117 * 4 3 2 31 31 H 0.96996 * 120.00725 * 180.02562 * 8 7 5 32 32 H 1.08002 * 119.90940 * 179.79524 * 18 16 15 33 33 H 1.08002 * 119.81090 * 180.23538 * 19 18 16 34 34 H 1.09007 * 109.46639 * 89.99904 * 21 20 19 35 35 H 1.08994 * 109.47249 * 210.00087 * 21 20 19 36 36 H 1.09003 * 109.46962 * 330.00655 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3894 -2.8779 8 7 5.3911 2.1824 -3.2578 9 14 3.0129 3.4348 -3.9294 10 1 3.1163 4.8551 -3.5084 11 1 3.4059 3.3115 -5.3561 12 1 1.6132 2.9688 -3.7594 13 6 2.2429 2.0166 1.1671 14 8 2.6478 3.1631 1.1671 15 6 1.9965 1.3213 2.4450 16 6 3.0206 0.5906 3.0573 17 9 4.2399 0.5185 2.4800 18 6 2.7796 -0.0616 4.2516 19 6 1.5333 0.0150 4.8469 20 6 0.5169 0.7389 4.2510 21 6 -0.8370 0.8146 4.9086 22 6 0.7391 1.3935 3.0539 23 9 -0.2551 2.1007 2.4736 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.5818 1.6876 -2.0284 30 1 2.0956 3.1409 -1.1386 31 1 5.7173 2.5728 -4.0837 32 1 3.5680 -0.6288 4.7241 33 1 1.3528 -0.4940 5.7822 34 1 -0.8668 1.6720 5.5810 35 1 -1.6064 0.9250 4.1445 36 1 -1.0168 -0.0986 5.4761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214775689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:56 Heat of formation + Delta-G solvation = -98.994754 kcal Electronic energy + Delta-G solvation = -22920.206311 eV Core-core repulsion = 19233.607094 eV Total energy + Delta-G solvation = -3686.599216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.10057 -48.89604 -39.70643 -38.35221 -35.45518 -32.97824 -32.53510 -31.13831 -30.34741 -27.80152 -26.87894 -24.38865 -23.02971 -22.39889 -21.71477 -18.94120 -18.11865 -17.48085 -16.93892 -16.78108 -16.35056 -15.63536 -15.43430 -15.29167 -14.85512 -14.45182 -14.35108 -13.88897 -13.64343 -13.46423 -13.22237 -13.17221 -12.53187 -12.36673 -12.22758 -11.97462 -11.81139 -11.74815 -11.73413 -11.46267 -10.95221 -10.76335 -10.51644 -10.16872 -9.57826 -9.35599 -9.01311 -8.70510 -8.57487 -7.80969 -6.06998 -4.06244 0.70881 0.80799 3.03030 3.09797 3.30316 3.36100 3.38284 3.59873 3.78157 4.26296 4.40005 4.40877 4.53318 4.70803 4.81688 5.17044 5.26204 5.27637 5.32582 5.47601 5.53638 5.63998 5.66279 5.70423 5.77879 5.91108 5.96815 6.00283 6.13224 6.40540 6.55507 6.67672 6.91154 7.25630 7.60050 8.10326 8.45904 8.76983 8.97508 9.52342 11.06290 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.005661 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.565472 B = 4945.239462 C = 5458.081540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.577 5.577 4 C 0.216 3.784 5 C -0.530 4.530 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.556 3.444 14 O -0.520 6.520 15 C -0.175 4.175 16 C 0.155 3.845 17 F -0.115 7.115 18 C -0.162 4.162 19 C -0.057 4.057 20 C -0.135 4.135 21 C -0.111 4.111 22 C 0.155 3.845 23 F -0.120 7.120 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.616 -8.190 16.442 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.307 5.307 4 C 0.096 3.904 5 C -0.568 4.568 6 H 0.094 0.906 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.340 3.660 14 O -0.397 6.397 15 C -0.181 4.181 16 C 0.135 3.865 17 F -0.093 7.093 18 C -0.181 4.181 19 C -0.075 4.075 20 C -0.136 4.136 21 C -0.167 4.167 22 C 0.135 3.865 23 F -0.098 7.098 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.256 -7.502 16.187 21.645 hybrid contribution -0.249 0.619 -0.910 1.128 sum -12.505 -6.883 15.277 20.908 Atomic orbital electron populations 1.22275 0.96415 1.01749 1.02587 1.21460 0.93682 0.83511 1.03107 1.47899 1.62762 1.13463 1.06566 1.19741 0.97684 0.93427 0.79572 1.21312 0.95161 1.33113 1.07238 0.90562 1.24835 0.94999 0.95741 0.97274 1.69893 1.15102 1.44894 1.23531 0.86872 0.81494 0.81683 0.79803 1.19844 1.20985 1.19032 1.17635 0.79179 0.86279 0.82886 1.90803 1.45018 1.17207 1.86629 1.20245 0.93747 1.04114 0.99947 1.17378 0.80346 0.96578 0.92236 1.91633 1.39761 1.94118 1.83806 1.21137 0.99269 1.02746 0.94959 1.20800 0.90839 0.96641 0.99256 1.19877 0.98629 1.00546 0.94566 1.20714 0.92138 1.03060 1.00808 1.17096 0.83714 0.93703 0.91989 1.91527 1.58922 1.75686 1.83701 0.92825 0.91981 0.91822 0.89223 0.91834 0.94788 0.94414 0.92532 0.83487 0.83741 0.90589 0.90967 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.11 1.83 5.95 -4.04 -0.02 1.80 16 3 N -0.58 -12.77 2.46 -176.29 -0.43 -13.20 16 4 C 0.22 5.49 4.23 -5.19 -0.02 5.46 16 5 C -0.53 -15.65 9.94 -34.44 -0.34 -15.99 16 6 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 7 C 0.07 2.20 5.47 -17.82 -0.10 2.10 16 8 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 9 Si 0.87 21.92 27.47 -169.99 -4.67 17.25 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.56 12.60 6.40 -12.46 -0.08 12.52 16 14 O -0.52 -14.02 16.69 5.29 0.09 -13.94 16 15 C -0.18 -3.09 3.92 -104.86 -0.41 -3.50 16 16 C 0.15 2.44 6.87 -38.97 -0.27 2.17 16 17 F -0.12 -2.14 16.83 2.25 0.04 -2.10 16 18 C -0.16 -1.76 10.01 -39.56 -0.40 -2.16 16 19 C -0.06 -0.51 9.68 -39.53 -0.38 -0.89 16 20 C -0.14 -1.43 5.88 -104.60 -0.62 -2.05 16 21 C -0.11 -0.83 9.83 36.01 0.35 -0.48 16 22 C 0.16 2.27 6.35 -38.96 -0.25 2.02 16 23 F -0.12 -1.88 14.65 2.25 0.03 -1.85 16 24 H 0.05 0.76 5.65 -51.93 -0.29 0.47 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 28 H 0.06 1.00 6.56 -51.92 -0.34 0.66 16 29 H 0.03 0.81 7.13 -51.93 -0.37 0.44 16 30 H 0.04 1.02 6.85 -51.93 -0.36 0.67 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.57 7.63 -51.93 -0.40 0.18 16 36 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -35.54 314.43 -5.88 -41.42 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -4.30 Total: -4.00 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.15 Total: -1.03 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.34 Total: -40.49 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.95 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.54 -5.88 -41.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214775689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.573 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds