Wall clock time and date at job start Tue Mar 31 2020 05:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46908 * 109.46765 * 2 1 4 4 C 1.46899 * 110.99814 * 193.95611 * 3 2 1 5 5 C 1.53001 * 109.47193 * 66.04674 * 4 3 2 6 6 C 1.53002 * 109.46752 * 179.97438 * 5 4 3 7 7 S 1.81002 * 109.46854 * 180.02562 * 6 5 4 8 8 C 1.76195 * 100.00031 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00444 * 0.02562 * 8 7 6 10 10 C 1.38807 * 119.99942 * 180.02562 * 8 7 6 11 11 N 1.31633 * 119.99904 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 119.99915 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47435 * 90.00079 * 12 10 8 14 14 H 1.48501 * 109.46957 * 210.00209 * 12 10 8 15 15 H 1.48501 * 109.47474 * 329.99910 * 12 10 8 16 16 C 1.39846 * 110.99864 * 70.00604 * 3 2 1 17 17 C 1.38828 * 120.08413 * 63.94667 * 16 3 2 18 18 C 1.38147 * 119.95209 * 179.97438 * 17 16 3 19 19 C 1.38274 * 120.11049 * 359.97438 * 18 17 16 20 20 C 1.38295 * 120.16344 * 359.97438 * 19 18 17 21 21 C 1.38278 * 120.04543 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.05693 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.46792 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46962 * 299.99511 * 1 2 3 25 25 H 1.09002 * 109.47346 * 60.00019 * 1 2 3 26 26 H 1.09003 * 109.46962 * 240.00489 * 2 1 3 27 27 H 1.08992 * 109.47287 * 120.00056 * 2 1 3 28 28 H 1.08994 * 109.47097 * 186.04846 * 4 3 2 29 29 H 1.09005 * 109.47023 * 306.04503 * 4 3 2 30 30 H 1.08994 * 109.47240 * 300.00085 * 5 4 3 31 31 H 1.08996 * 109.47096 * 60.00033 * 5 4 3 32 32 H 1.08995 * 109.47190 * 299.99509 * 6 5 4 33 33 H 1.08996 * 109.47281 * 60.00161 * 6 5 4 34 34 H 0.97000 * 119.99647 * 180.02562 * 11 10 8 35 35 H 1.07999 * 120.02485 * 359.97438 * 17 16 3 36 36 H 1.07997 * 119.94806 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.92400 * 180.02562 * 19 18 17 38 38 H 1.07993 * 119.97748 * 179.74876 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4499 1.4378 -0.3308 5 6 3.6565 0.9787 -1.7756 6 6 5.1462 1.0343 -2.1202 7 16 5.3906 0.4919 -3.8296 8 6 7.1409 0.6516 -3.9540 9 1 7.7130 0.9997 -3.1067 10 6 7.7845 0.3300 -5.1411 11 7 9.0922 0.4488 -5.2339 12 14 6.7951 -0.2728 -6.6064 13 1 6.3806 0.8877 -7.4350 14 1 7.6290 -1.1912 -7.4227 15 1 5.5891 -0.9942 -6.1264 16 6 1.7657 2.0063 1.2269 17 6 2.3705 1.5346 2.3841 18 6 2.1182 2.1508 3.5946 19 6 1.2646 3.2369 3.6555 20 6 0.6605 3.7113 2.5055 21 6 0.9084 3.0997 1.2903 22 9 0.3180 3.5626 0.1668 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8112 2.4601 -0.2192 29 1 4.0027 0.7817 0.3416 30 1 3.2953 -0.0435 -1.8872 31 1 3.1037 1.6348 -2.4478 32 1 5.5070 2.0567 -2.0088 33 1 5.6994 0.3785 -1.4479 34 1 9.5419 0.2244 -6.0635 35 1 3.0377 0.6867 2.3381 36 1 2.5890 1.7840 4.4947 37 1 1.0698 3.7166 4.6033 38 1 -0.0087 4.5573 2.5571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266761547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:34 Heat of formation + Delta-G solvation = -26.726214 kcal Electronic energy + Delta-G solvation = -19427.634238 eV Core-core repulsion = 16310.381996 eV Total energy + Delta-G solvation = -3117.252241 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.83004 -40.04681 -37.35087 -33.39306 -32.43027 -31.34478 -30.76681 -29.00699 -25.82086 -25.10115 -23.69436 -22.80216 -21.66387 -20.36431 -17.94377 -17.44894 -16.56135 -16.51902 -16.10476 -15.21701 -15.20115 -14.95263 -14.81664 -14.43668 -14.09294 -13.92558 -13.38522 -12.85627 -12.79918 -12.56853 -12.36270 -12.20174 -12.02559 -11.74784 -11.51684 -11.41287 -11.23242 -11.06090 -10.99188 -10.34355 -10.18918 -9.79170 -9.21736 -8.99816 -8.80620 -8.65074 -8.55339 -6.93524 -6.27846 -3.99989 0.86650 0.93645 2.99612 3.29291 3.31295 3.45471 3.47282 3.68254 4.13137 4.32445 4.51651 4.65225 4.79458 4.81528 4.95501 5.00050 5.05228 5.11059 5.16314 5.32194 5.36593 5.43806 5.58569 5.62188 5.72685 5.78930 5.84110 5.86233 5.93299 6.02005 6.09801 6.11909 6.22648 6.44723 6.49781 6.63873 6.83237 7.19157 7.95984 8.44770 9.18131 10.81689 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.003264 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.976148 B = 8577.678645 C = 8863.037285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.502 5.502 4 C 0.066 3.934 5 C -0.097 4.097 6 C -0.082 4.082 7 S -0.213 6.213 8 C -0.502 4.502 9 H 0.087 0.913 10 C 0.091 3.909 11 N -0.882 5.882 12 Si 0.862 3.138 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.238 1.238 16 C 0.063 3.937 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.097 4.097 20 C -0.154 4.154 21 C 0.123 3.877 22 F -0.127 7.127 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.270 0.730 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 2.453 18.074 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.224 5.224 4 C -0.062 4.062 5 C -0.136 4.136 6 C -0.231 4.231 7 S 0.015 5.985 8 C -0.650 4.650 9 H 0.106 0.894 10 C -0.117 4.117 11 N -0.519 5.519 12 Si 0.687 3.313 13 H -0.193 1.193 14 H -0.201 1.201 15 H -0.162 1.162 16 C -0.032 4.032 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.116 4.116 20 C -0.174 4.174 21 C 0.102 3.898 22 F -0.105 7.105 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.882 2.338 16.735 25.339 hybrid contribution 1.198 -0.142 0.585 1.341 sum -17.685 2.197 17.320 24.851 Atomic orbital electron populations 1.21748 0.94755 1.01476 1.02433 1.22287 0.96290 0.87255 1.01825 1.59642 1.18308 1.17683 1.26734 1.22243 0.85058 1.01763 0.97116 1.21368 0.95416 1.02222 0.94611 1.23005 0.97375 1.03365 0.99379 1.84163 1.13216 1.87503 1.13662 1.22130 0.88074 1.51557 1.03227 0.89449 1.24800 0.94611 0.94020 0.98245 1.69942 1.07700 1.46842 1.27447 0.86665 0.81618 0.80141 0.82887 1.19340 1.20129 1.16164 1.18858 0.98206 0.95915 0.90187 1.21613 0.99724 1.00375 0.92475 1.21089 0.98918 0.96493 0.97724 1.21013 0.96357 0.96323 0.97866 1.21140 1.03012 1.01904 0.91309 1.17635 0.95200 0.94256 0.82690 1.91518 1.81588 1.87478 1.49912 0.92125 0.93252 0.91610 0.89236 0.94357 0.90478 0.94172 0.91309 0.90444 0.91365 0.91542 0.91984 0.85303 0.85453 0.85102 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.95 37.16 0.37 -1.12 16 2 C 0.05 0.55 5.47 -3.82 -0.02 0.53 16 3 N -0.50 -6.34 4.30 -171.02 -0.74 -7.07 16 4 C 0.07 0.88 4.54 -3.82 -0.02 0.86 16 5 C -0.10 -1.53 5.18 -26.73 -0.14 -1.66 16 6 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 7 S -0.21 -5.24 19.41 -107.50 -2.09 -7.33 16 8 C -0.50 -14.69 10.04 30.94 0.31 -14.37 16 9 H 0.09 2.72 8.03 -52.49 -0.42 2.29 16 10 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 11 N -0.88 -26.95 13.97 55.49 0.78 -26.17 16 12 Si 0.86 21.71 27.74 -169.99 -4.71 17.00 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.24 -5.86 6.74 56.52 0.38 -5.47 16 16 C 0.06 0.74 3.75 -83.67 -0.31 0.43 16 17 C -0.12 -1.19 8.53 -39.40 -0.34 -1.53 16 18 C -0.12 -0.99 10.04 -39.60 -0.40 -1.39 16 19 C -0.10 -0.74 10.04 -39.55 -0.40 -1.14 16 20 C -0.15 -1.40 10.02 -39.55 -0.40 -1.79 16 21 C 0.12 1.44 7.31 -39.25 -0.29 1.15 16 22 F -0.13 -1.71 17.08 2.25 0.04 -1.67 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.51 7.52 -51.93 -0.39 0.12 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.03 5.98 -51.93 -0.31 0.72 16 27 H 0.04 0.39 7.07 -51.93 -0.37 0.02 16 28 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 29 H 0.04 0.50 7.48 -51.93 -0.39 0.11 16 30 H 0.07 1.05 6.31 -51.93 -0.33 0.72 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 33 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.13 1.16 7.14 -52.49 -0.37 0.79 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -31.56 330.27 -8.79 -40.36 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.54 Total: -1.24 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.51 Total: -18.84 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.04 Total: -33.25 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.09 Total: -7.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.56 -8.79 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266761547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.630 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds