Wall clock time and date at job start Tue Mar 31 2020 05:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46908 * 109.46765 * 2 1 4 4 C 1.46899 * 110.99814 * 193.95611 * 3 2 1 5 5 C 1.53001 * 109.47193 * 66.04674 * 4 3 2 6 6 C 1.53002 * 109.46752 * 179.97438 * 5 4 3 7 7 S 1.81002 * 109.46854 * 180.02562 * 6 5 4 8 8 C 1.76195 * 100.00031 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00444 * 0.02562 * 8 7 6 10 10 C 1.38807 * 119.99942 * 180.02562 * 8 7 6 11 11 N 1.31633 * 119.99904 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 119.99915 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47435 * 90.00079 * 12 10 8 14 14 H 1.48501 * 109.46957 * 210.00209 * 12 10 8 15 15 H 1.48501 * 109.47474 * 329.99910 * 12 10 8 16 16 C 1.39846 * 110.99864 * 70.00604 * 3 2 1 17 17 C 1.38828 * 120.08413 * 63.94667 * 16 3 2 18 18 C 1.38147 * 119.95209 * 179.97438 * 17 16 3 19 19 C 1.38274 * 120.11049 * 359.97438 * 18 17 16 20 20 C 1.38295 * 120.16344 * 359.97438 * 19 18 17 21 21 C 1.38278 * 120.04543 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.05693 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.46792 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46962 * 299.99511 * 1 2 3 25 25 H 1.09002 * 109.47346 * 60.00019 * 1 2 3 26 26 H 1.09003 * 109.46962 * 240.00489 * 2 1 3 27 27 H 1.08992 * 109.47287 * 120.00056 * 2 1 3 28 28 H 1.08994 * 109.47097 * 186.04846 * 4 3 2 29 29 H 1.09005 * 109.47023 * 306.04503 * 4 3 2 30 30 H 1.08994 * 109.47240 * 300.00085 * 5 4 3 31 31 H 1.08996 * 109.47096 * 60.00033 * 5 4 3 32 32 H 1.08995 * 109.47190 * 299.99509 * 6 5 4 33 33 H 1.08996 * 109.47281 * 60.00161 * 6 5 4 34 34 H 0.97000 * 119.99647 * 180.02562 * 11 10 8 35 35 H 1.07999 * 120.02485 * 359.97438 * 17 16 3 36 36 H 1.07997 * 119.94806 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.92400 * 180.02562 * 19 18 17 38 38 H 1.07993 * 119.97748 * 179.74876 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4499 1.4378 -0.3308 5 6 3.6565 0.9787 -1.7756 6 6 5.1462 1.0343 -2.1202 7 16 5.3906 0.4919 -3.8296 8 6 7.1409 0.6516 -3.9540 9 1 7.7130 0.9997 -3.1067 10 6 7.7845 0.3300 -5.1411 11 7 9.0922 0.4488 -5.2339 12 14 6.7951 -0.2728 -6.6064 13 1 6.3806 0.8877 -7.4350 14 1 7.6290 -1.1912 -7.4227 15 1 5.5891 -0.9942 -6.1264 16 6 1.7657 2.0063 1.2269 17 6 2.3705 1.5346 2.3841 18 6 2.1182 2.1508 3.5946 19 6 1.2646 3.2369 3.6555 20 6 0.6605 3.7113 2.5055 21 6 0.9084 3.0997 1.2903 22 9 0.3180 3.5626 0.1668 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8112 2.4601 -0.2192 29 1 4.0027 0.7817 0.3416 30 1 3.2953 -0.0435 -1.8872 31 1 3.1037 1.6348 -2.4478 32 1 5.5070 2.0567 -2.0088 33 1 5.6994 0.3785 -1.4479 34 1 9.5419 0.2244 -6.0635 35 1 3.0377 0.6867 2.3381 36 1 2.5890 1.7840 4.4947 37 1 1.0698 3.7166 4.6033 38 1 -0.0087 4.5573 2.5571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266761547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:34 Heat of formation + Delta-G solvation = -44.405490 kcal Electronic energy + Delta-G solvation = -19428.400869 eV Core-core repulsion = 16310.381996 eV Total energy + Delta-G solvation = -3118.018872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.72953 -40.85299 -38.18892 -34.71657 -34.62318 -32.13493 -31.46907 -29.96903 -27.98774 -26.36925 -24.48263 -23.63265 -22.71692 -21.35004 -19.65167 -18.66449 -17.45471 -17.31751 -17.12921 -17.05503 -16.38721 -16.28745 -15.71569 -15.54452 -15.16437 -14.94370 -14.87499 -14.35414 -13.88432 -13.81992 -13.49827 -13.18300 -13.08456 -13.04544 -12.84526 -12.66888 -12.47138 -12.30694 -12.19018 -12.01561 -11.70767 -11.47789 -11.17007 -10.58096 -9.92327 -9.58224 -9.53515 -9.00378 -8.52922 -6.24275 0.15880 0.22826 1.11237 1.31862 1.47224 1.71987 2.24197 2.60259 2.63687 2.70895 2.85211 3.37618 3.81357 3.86705 3.99166 4.08100 4.12769 4.19412 4.30019 4.33229 4.37497 4.44934 4.54018 4.62080 4.66143 4.74483 4.90188 4.99768 5.08508 5.10763 5.20191 5.24062 5.27169 5.35392 5.44375 5.68820 5.78272 5.88208 6.09035 6.34056 6.91206 8.60262 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.003264 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.976148 B = 8577.678645 C = 8863.037285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 N -0.514 5.514 4 C 0.076 3.924 5 C -0.084 4.084 6 C -0.069 4.069 7 S -0.218 6.218 8 C -0.523 4.523 9 H 0.050 0.950 10 C 0.038 3.962 11 N -0.923 5.923 12 Si 0.926 3.074 13 H -0.263 1.263 14 H -0.262 1.262 15 H -0.228 1.228 16 C 0.045 3.955 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.090 4.090 20 C -0.154 4.154 21 C 0.091 3.909 22 F -0.146 7.146 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.277 0.723 35 H 0.135 0.865 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.677 2.013 19.567 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 N -0.236 5.236 4 C -0.052 4.052 5 C -0.123 4.123 6 C -0.218 4.218 7 S 0.010 5.990 8 C -0.670 4.670 9 H 0.069 0.931 10 C -0.167 4.167 11 N -0.561 5.561 12 Si 0.747 3.253 13 H -0.187 1.187 14 H -0.186 1.186 15 H -0.152 1.152 16 C -0.050 4.050 17 C -0.150 4.150 18 C -0.137 4.137 19 C -0.108 4.108 20 C -0.173 4.173 21 C 0.071 3.929 22 F -0.125 7.125 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.173 0.827 37 H 0.182 0.818 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.529 1.900 18.243 27.529 hybrid contribution 1.711 0.062 0.314 1.741 sum -18.818 1.962 18.557 26.501 Atomic orbital electron populations 1.21688 0.94166 1.02314 1.01549 1.22336 0.96774 0.86664 1.02029 1.59535 1.17353 1.18581 1.28119 1.22024 0.86267 1.01433 0.95429 1.21225 0.92228 1.02653 0.96161 1.23046 1.00151 1.02799 0.95772 1.83865 1.09151 1.87941 1.18061 1.22342 0.90886 1.51417 1.02374 0.93144 1.25781 0.95689 0.93999 1.01206 1.70039 1.09470 1.47845 1.28706 0.85713 0.80466 0.80035 0.79128 1.18722 1.18629 1.15173 1.18943 0.99337 0.96442 0.90279 1.21740 0.99837 1.00817 0.92590 1.21462 0.98265 0.95998 0.97962 1.21429 0.95014 0.95754 0.98592 1.21426 1.03055 1.02077 0.90787 1.18026 0.96450 0.95304 0.83095 1.91460 1.82114 1.87831 1.51081 0.90365 0.93612 0.92966 0.89790 0.93224 0.91191 0.93038 0.90514 0.91355 0.91837 0.91232 0.91372 0.84749 0.82746 0.81800 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.95 71.98 0.72 -1.99 16 2 C 0.05 1.00 5.47 86.30 0.47 1.47 16 3 N -0.51 -12.62 4.30 -694.99 -2.99 -15.61 16 4 C 0.08 1.97 4.54 86.30 0.39 2.37 16 5 C -0.08 -2.56 5.18 30.60 0.16 -2.40 16 6 C -0.07 -2.66 5.67 71.98 0.41 -2.25 16 7 S -0.22 -10.66 19.41 -56.49 -1.10 -11.76 16 8 C -0.52 -31.21 10.04 67.96 0.68 -30.53 16 9 H 0.05 3.27 8.03 -2.91 -0.02 3.25 16 10 C 0.04 2.25 5.50 84.86 0.47 2.72 16 11 N -0.92 -57.31 13.97 21.65 0.30 -57.01 16 12 Si 0.93 44.62 27.74 68.60 1.90 46.52 16 13 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.23 -10.59 6.74 99.48 0.67 -9.92 16 16 C 0.04 1.00 3.75 38.21 0.14 1.15 16 17 C -0.13 -2.28 8.53 22.39 0.19 -2.09 16 18 C -0.12 -1.52 10.04 22.26 0.22 -1.30 16 19 C -0.09 -1.07 10.04 22.29 0.22 -0.84 16 20 C -0.15 -2.50 10.02 22.29 0.22 -2.28 16 21 C 0.09 2.08 7.31 22.48 0.16 2.25 16 22 F -0.15 -4.02 17.08 44.97 0.77 -3.25 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 0.91 7.52 -2.39 -0.02 0.89 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.83 5.98 -2.39 -0.01 1.82 16 27 H 0.05 0.93 7.07 -2.39 -0.02 0.91 16 28 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 29 H 0.05 1.21 7.48 -2.38 -0.02 1.19 16 30 H 0.08 2.24 6.31 -2.39 -0.02 2.23 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 33 H 0.07 2.65 8.14 -2.40 -0.02 2.63 16 34 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.13 2.14 7.14 -2.91 -0.02 2.12 16 36 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -69.17 330.27 4.35 -64.82 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.00 Total: 10.02 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 4.47 Total: -33.73 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -2.69 Total: -72.62 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.77 Total: -3.25 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -1.10 Total: -11.76 kcal Total: -69.17 4.35 -64.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266761547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.414 kcal (2) G-P(sol) polarization free energy of solvation -69.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds