Wall clock time and date at job start Tue Mar 31 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99920 * 2 1 4 4 H 1.48500 * 109.47108 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47298 * 119.99595 * 3 2 1 6 6 H 1.48507 * 109.46882 * 239.99860 * 3 2 1 7 7 C 1.38815 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00059 * 201.92830 * 7 2 1 9 9 N 1.36931 * 119.99646 * 21.93037 * 7 2 1 10 10 C 1.46500 * 120.00478 * 34.89931 * 9 7 2 11 11 C 1.50699 * 109.46798 * 89.99787 * 10 9 7 12 12 C 1.34739 * 125.66248 * 89.71977 * 11 10 9 13 13 C 1.40928 * 107.03421 * 179.85080 * 12 11 10 14 14 C 1.35949 * 106.73922 * 0.40722 * 13 12 11 15 15 C 1.47789 * 125.93320 * 179.78169 * 14 13 12 16 16 C 1.39589 * 120.14368 * 359.71600 * 15 14 13 17 17 C 1.37964 * 119.84853 * 179.69493 * 16 15 14 18 18 C 1.38363 * 120.14569 * 0.57788 * 17 16 15 19 19 C 1.38357 * 120.29616 * 359.71338 * 18 17 16 20 20 C 1.37956 * 120.14921 * 359.97438 * 19 18 17 21 21 O 1.34299 * 125.66658 * 270.02856 * 11 10 9 22 22 C 1.46505 * 119.99712 * 214.90423 * 9 7 2 23 23 C 1.52994 * 117.49722 * 11.85697 * 22 9 7 24 24 C 1.53003 * 117.49664 * 303.19751 * 22 9 7 25 25 H 0.97002 * 120.00165 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47350 * 209.99813 * 10 9 7 27 27 H 1.09001 * 109.46815 * 330.00737 * 10 9 7 28 28 H 1.08001 * 126.48419 * 0.02562 * 12 11 10 29 29 H 1.08002 * 126.63464 * 180.13632 * 13 12 11 30 30 H 1.07998 * 120.07758 * 359.96799 * 16 15 14 31 31 H 1.08000 * 119.92658 * 180.31533 * 17 16 15 32 32 H 1.07993 * 119.85269 * 179.70248 * 18 17 16 33 33 H 1.07998 * 119.93039 * 179.97438 * 19 18 17 34 34 H 1.08003 * 120.08173 * 180.02562 * 20 19 18 35 35 H 1.08997 * 115.54918 * 157.53459 * 22 9 7 36 36 H 1.08995 * 117.50178 * 0.02562 * 23 22 9 37 37 H 1.09007 * 117.49403 * 145.02296 * 23 22 9 38 38 H 1.08999 * 117.50007 * 214.98135 * 24 22 9 39 39 H 1.08997 * 117.49884 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0317 -1.2358 0.3498 9 7 1.3999 -2.3453 -0.4419 10 6 0.4396 -2.2826 -1.5465 11 6 1.1658 -2.4650 -2.8543 12 6 1.3999 -3.6430 -3.4651 13 6 2.0998 -3.3591 -4.6549 14 6 2.2638 -2.0103 -4.7004 15 6 2.9496 -1.2556 -5.7701 16 6 3.5062 -1.9304 -6.8579 17 6 4.1394 -1.2193 -7.8562 18 6 4.2340 0.1587 -7.7749 19 6 3.6899 0.8332 -6.6964 20 6 3.0483 0.1349 -5.6945 21 8 1.6922 -1.4811 -3.6015 22 6 1.7071 -3.6311 0.1896 23 6 2.4925 -3.6036 1.5023 24 6 3.1713 -4.0743 0.2136 25 1 -0.4850 0.8400 0.0004 26 1 -0.3015 -3.0732 -1.4290 27 1 -0.0589 -1.3133 -1.5399 28 1 1.1044 -4.6197 -3.1115 29 1 2.4437 -4.0750 -5.3868 30 1 3.4373 -3.0064 -6.9201 31 1 4.5660 -1.7397 -8.7010 32 1 4.7350 0.7102 -8.5566 33 1 3.7675 1.9089 -6.6387 34 1 2.6236 0.6626 -4.8533 35 1 0.9488 -4.4052 0.0728 36 1 2.7802 -2.6290 1.8964 37 1 2.2510 -4.3601 2.2491 38 1 3.3762 -5.1402 0.1130 39 1 3.9059 -3.4095 -0.2408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271117027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:28 Heat of formation + Delta-G solvation = 86.987714 kcal Electronic energy + Delta-G solvation = -21616.914314 eV Core-core repulsion = 18492.609432 eV Total energy + Delta-G solvation = -3124.304882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.80406 -38.80318 -37.10002 -33.76565 -32.63180 -32.00626 -30.85957 -30.62079 -28.22314 -25.43753 -23.76389 -22.78256 -21.98610 -21.41350 -20.54476 -19.97112 -19.56692 -17.49420 -16.57498 -15.79877 -15.59453 -15.32369 -14.72055 -14.52656 -14.39884 -13.94821 -13.54983 -13.37135 -12.96009 -12.64367 -12.47360 -12.19014 -12.16654 -11.86754 -11.22736 -11.15651 -10.91385 -10.86006 -10.80831 -10.65045 -10.26464 -10.11254 -9.74976 -9.57762 -9.40643 -9.00279 -8.90657 -8.52424 -7.27819 -6.72175 -5.94709 -3.50491 1.03538 1.45991 2.63037 3.24000 3.33114 3.37787 3.42490 3.54011 4.01947 4.37800 4.87817 4.90614 4.98468 5.02447 5.16835 5.21277 5.29235 5.49334 5.54997 5.62511 5.76145 5.83673 5.92575 6.05006 6.06987 6.15097 6.27261 6.34071 6.41158 6.44821 6.52445 6.53905 6.56912 6.72199 6.82569 6.93214 7.02373 7.11384 7.12840 7.38356 7.70537 7.95360 8.34729 8.99115 9.62932 10.15675 11.05437 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.005700 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.510226 B = 4911.455665 C = 6020.892630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.018 3.982 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.536 5.536 10 C 0.201 3.799 11 C 0.040 3.960 12 C -0.243 4.243 13 C -0.179 4.179 14 C -0.019 4.019 15 C 0.007 3.993 16 C -0.109 4.109 17 C -0.118 4.118 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.108 4.108 21 O -0.157 6.157 22 C 0.124 3.876 23 C -0.191 4.191 24 C -0.224 4.224 25 H 0.260 0.740 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -3.886 -11.381 12.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.183 4.183 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.251 5.251 10 C 0.074 3.926 11 C -0.015 4.015 12 C -0.263 4.263 13 C -0.199 4.199 14 C -0.069 4.069 15 C 0.007 3.993 16 C -0.128 4.128 17 C -0.136 4.136 18 C -0.147 4.147 19 C -0.134 4.134 20 C -0.126 4.126 21 O -0.052 6.052 22 C 0.016 3.984 23 C -0.230 4.230 24 C -0.265 4.265 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.063 -3.386 -11.272 12.451 hybrid contribution 0.711 0.539 -0.059 0.895 sum 4.775 -2.846 -11.331 12.621 Atomic orbital electron populations 1.69909 1.05606 1.26418 1.50478 1.25103 0.95051 0.98845 0.99261 0.86411 0.79357 0.82862 0.78548 1.21320 1.20524 1.20546 1.18920 0.94897 0.85321 1.40012 0.91717 1.43347 1.48952 1.01912 1.30919 1.19837 0.89617 1.05376 0.77743 1.24975 0.96958 0.85190 0.94392 1.21369 1.08660 0.98721 0.97587 1.21591 1.04343 0.94118 0.99827 1.20266 1.05005 0.91701 0.89928 1.17850 0.97028 0.92520 0.91900 1.21015 0.98534 0.99889 0.93321 1.20975 0.99753 0.94269 0.98595 1.21165 1.00596 0.94529 0.98430 1.21076 0.98164 0.99965 0.94164 1.21384 0.98780 0.93328 0.99138 1.84154 1.56110 1.37162 1.27724 1.21140 0.91120 0.89871 0.96303 1.23089 1.06559 1.02271 0.91068 1.23360 1.00640 0.99272 1.03214 0.93036 0.91467 0.86442 0.84279 0.84417 0.85721 0.85877 0.86202 0.85902 0.85312 0.89155 0.88225 0.90551 0.90776 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.38 11.31 55.49 0.63 -23.75 16 2 C 0.02 0.49 4.97 -17.43 -0.09 0.41 16 3 Si 0.90 21.51 29.61 -169.99 -5.03 16.48 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.26 -6.99 8.21 -15.06 -0.12 -7.12 16 8 H 0.07 1.76 7.14 -52.49 -0.37 1.38 16 9 N -0.54 -13.00 2.78 -167.02 -0.46 -13.47 16 10 C 0.20 4.63 5.86 -5.19 -0.03 4.60 16 11 C 0.04 0.87 6.90 -35.55 -0.25 0.63 16 12 C -0.24 -4.63 10.78 -39.80 -0.43 -5.06 16 13 C -0.18 -3.19 10.26 -39.39 -0.40 -3.60 16 14 C -0.02 -0.37 7.03 -36.50 -0.26 -0.62 16 15 C 0.01 0.12 5.87 -104.98 -0.62 -0.49 16 16 C -0.11 -1.50 9.56 -39.18 -0.37 -1.87 16 17 C -0.12 -1.37 10.03 -39.64 -0.40 -1.77 16 18 C -0.13 -1.49 10.04 -39.49 -0.40 -1.89 16 19 C -0.12 -1.53 10.03 -39.64 -0.40 -1.93 16 20 C -0.11 -1.76 9.72 -39.18 -0.38 -2.14 16 21 O -0.16 -3.56 10.41 4.64 0.05 -3.51 16 22 C 0.12 2.61 6.60 -67.93 -0.45 2.16 16 23 C -0.19 -3.75 9.78 -26.70 -0.26 -4.02 16 24 C -0.22 -4.33 10.15 -26.69 -0.27 -4.60 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 27 H 0.12 3.04 5.34 -51.93 -0.28 2.76 16 28 H 0.14 2.34 8.06 -52.49 -0.42 1.91 16 29 H 0.14 1.99 7.26 -52.49 -0.38 1.61 16 30 H 0.12 1.47 6.99 -52.49 -0.37 1.11 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.13 2.24 7.91 -52.48 -0.42 1.83 16 35 H 0.09 1.70 8.11 -51.93 -0.42 1.28 16 36 H 0.10 2.16 6.80 -51.93 -0.35 1.81 16 37 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -29.00 333.81 -10.01 -39.02 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.10 Total: 7.53 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -5.12 Total: -27.32 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.16 Total: -37.22 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: 0.05 Total: -3.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.00 -10.01 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271117027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.006 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds