Wall clock time and date at job start Tue Mar 31 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99920 * 2 1 4 4 H 1.48500 * 109.47108 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47298 * 119.99595 * 3 2 1 6 6 H 1.48507 * 109.46882 * 239.99860 * 3 2 1 7 7 C 1.38815 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00059 * 201.92830 * 7 2 1 9 9 N 1.36931 * 119.99646 * 21.93037 * 7 2 1 10 10 C 1.46500 * 120.00478 * 34.89931 * 9 7 2 11 11 C 1.50699 * 109.46798 * 89.99787 * 10 9 7 12 12 C 1.34739 * 125.66248 * 89.71977 * 11 10 9 13 13 C 1.40928 * 107.03421 * 179.85080 * 12 11 10 14 14 C 1.35949 * 106.73922 * 0.40722 * 13 12 11 15 15 C 1.47789 * 125.93320 * 179.78169 * 14 13 12 16 16 C 1.39589 * 120.14368 * 359.71600 * 15 14 13 17 17 C 1.37964 * 119.84853 * 179.69493 * 16 15 14 18 18 C 1.38363 * 120.14569 * 0.57788 * 17 16 15 19 19 C 1.38357 * 120.29616 * 359.71338 * 18 17 16 20 20 C 1.37956 * 120.14921 * 359.97438 * 19 18 17 21 21 O 1.34299 * 125.66658 * 270.02856 * 11 10 9 22 22 C 1.46505 * 119.99712 * 214.90423 * 9 7 2 23 23 C 1.52994 * 117.49722 * 11.85697 * 22 9 7 24 24 C 1.53003 * 117.49664 * 303.19751 * 22 9 7 25 25 H 0.97002 * 120.00165 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47350 * 209.99813 * 10 9 7 27 27 H 1.09001 * 109.46815 * 330.00737 * 10 9 7 28 28 H 1.08001 * 126.48419 * 0.02562 * 12 11 10 29 29 H 1.08002 * 126.63464 * 180.13632 * 13 12 11 30 30 H 1.07998 * 120.07758 * 359.96799 * 16 15 14 31 31 H 1.08000 * 119.92658 * 180.31533 * 17 16 15 32 32 H 1.07993 * 119.85269 * 179.70248 * 18 17 16 33 33 H 1.07998 * 119.93039 * 179.97438 * 19 18 17 34 34 H 1.08003 * 120.08173 * 180.02562 * 20 19 18 35 35 H 1.08997 * 115.54918 * 157.53459 * 22 9 7 36 36 H 1.08995 * 117.50178 * 0.02562 * 23 22 9 37 37 H 1.09007 * 117.49403 * 145.02296 * 23 22 9 38 38 H 1.08999 * 117.50007 * 214.98135 * 24 22 9 39 39 H 1.08997 * 117.49884 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0317 -1.2358 0.3498 9 7 1.3999 -2.3453 -0.4419 10 6 0.4396 -2.2826 -1.5465 11 6 1.1658 -2.4650 -2.8543 12 6 1.3999 -3.6430 -3.4651 13 6 2.0998 -3.3591 -4.6549 14 6 2.2638 -2.0103 -4.7004 15 6 2.9496 -1.2556 -5.7701 16 6 3.5062 -1.9304 -6.8579 17 6 4.1394 -1.2193 -7.8562 18 6 4.2340 0.1587 -7.7749 19 6 3.6899 0.8332 -6.6964 20 6 3.0483 0.1349 -5.6945 21 8 1.6922 -1.4811 -3.6015 22 6 1.7071 -3.6311 0.1896 23 6 2.4925 -3.6036 1.5023 24 6 3.1713 -4.0743 0.2136 25 1 -0.4850 0.8400 0.0004 26 1 -0.3015 -3.0732 -1.4290 27 1 -0.0589 -1.3133 -1.5399 28 1 1.1044 -4.6197 -3.1115 29 1 2.4437 -4.0750 -5.3868 30 1 3.4373 -3.0064 -6.9201 31 1 4.5660 -1.7397 -8.7010 32 1 4.7350 0.7102 -8.5566 33 1 3.7675 1.9089 -6.6387 34 1 2.6236 0.6626 -4.8533 35 1 0.9488 -4.4052 0.0728 36 1 2.7802 -2.6290 1.8964 37 1 2.2510 -4.3601 2.2491 38 1 3.3762 -5.1402 0.1130 39 1 3.9059 -3.4095 -0.2408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271117027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:28 Heat of formation + Delta-G solvation = 73.619152 kcal Electronic energy + Delta-G solvation = -21617.494018 eV Core-core repulsion = 18492.609432 eV Total energy + Delta-G solvation = -3124.884586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.33498 -39.87029 -38.80485 -35.53828 -34.07702 -33.55407 -32.31825 -31.84806 -29.80020 -27.15942 -25.45274 -23.93334 -23.23853 -22.98064 -21.98078 -21.68991 -21.05574 -18.87389 -18.28186 -17.43258 -16.98951 -16.82629 -16.24642 -15.93750 -15.85708 -15.66591 -14.86330 -14.66945 -14.41396 -13.86414 -13.80559 -13.71167 -13.59241 -13.56500 -13.07543 -12.78576 -12.75389 -12.25273 -12.21379 -12.14000 -11.97759 -11.92967 -11.53034 -11.00838 -10.90459 -10.50404 -10.33369 -9.94690 -8.69997 -8.62213 -7.94904 -5.54721 -0.14358 0.41885 1.20680 1.35499 1.39815 1.45335 1.83918 2.10984 2.40564 2.91069 3.08576 3.39376 3.50208 3.69064 3.93901 4.03242 4.17464 4.21879 4.27261 4.29656 4.44079 4.49060 4.51072 4.54112 4.66310 4.81279 4.92576 4.98183 5.00847 5.04699 5.09386 5.22681 5.31512 5.37260 5.51035 5.51745 5.54198 5.56809 5.60238 5.79489 6.00824 6.30875 6.47218 7.01619 7.71301 8.19255 8.99968 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.005700 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.510226 B = 4911.455665 C = 6020.892630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.025 4.025 3 Si 0.946 3.054 4 H -0.284 1.284 5 H -0.271 1.271 6 H -0.290 1.290 7 C -0.263 4.263 8 H 0.051 0.949 9 N -0.554 5.554 10 C 0.206 3.794 11 C -0.002 4.002 12 C -0.225 4.225 13 C -0.180 4.180 14 C -0.028 4.028 15 C -0.030 4.030 16 C -0.107 4.107 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.138 4.138 21 O -0.195 6.195 22 C 0.102 3.898 23 C -0.188 4.188 24 C -0.206 4.206 25 H 0.256 0.744 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.177 0.823 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.923 -5.769 -13.903 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.223 4.223 3 Si 0.774 3.226 4 H -0.209 1.209 5 H -0.196 1.196 6 H -0.217 1.217 7 C -0.393 4.393 8 H 0.068 0.932 9 N -0.270 5.270 10 C 0.080 3.920 11 C -0.056 4.056 12 C -0.244 4.244 13 C -0.199 4.199 14 C -0.078 4.078 15 C -0.030 4.030 16 C -0.125 4.125 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.139 4.139 20 C -0.156 4.156 21 O -0.092 6.092 22 C -0.005 4.005 23 C -0.226 4.226 24 C -0.247 4.247 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.182 0.818 29 H 0.194 0.806 30 H 0.164 0.836 31 H 0.182 0.818 32 H 0.176 0.824 33 H 0.159 0.841 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.756 -5.289 -13.784 15.846 hybrid contribution 0.281 1.116 0.549 1.275 sum 6.037 -4.173 -13.234 15.133 Atomic orbital electron populations 1.70006 1.06383 1.26466 1.52076 1.25634 0.95695 1.01008 1.00001 0.85679 0.78383 0.80447 0.78123 1.20941 1.19614 1.21682 1.18943 0.94338 0.86769 1.39244 0.93182 1.43486 1.49025 1.02429 1.32021 1.19589 0.89812 1.04077 0.78557 1.24693 0.99603 0.86207 0.95096 1.21673 1.06928 0.98576 0.97268 1.21975 1.03880 0.93938 1.00086 1.21049 1.04263 0.93043 0.89428 1.18090 0.99212 0.92781 0.92899 1.21327 0.97648 1.01088 0.92397 1.21487 0.98117 0.94420 0.98756 1.21657 0.98754 0.94980 0.98013 1.21335 0.97627 1.01014 0.93908 1.21344 1.00748 0.93786 0.99716 1.84094 1.57236 1.38590 1.29281 1.21463 0.92669 0.89189 0.97188 1.23090 1.06061 1.01867 0.91582 1.23283 0.98621 1.00568 1.02197 0.93455 0.89613 0.89994 0.81772 0.80569 0.83632 0.81783 0.82357 0.84136 0.88541 0.86603 0.91134 0.87247 0.87276 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.56 11.31 21.65 0.24 -52.32 16 2 C -0.03 -1.42 4.97 84.86 0.42 -1.00 16 3 Si 0.95 46.29 29.61 68.60 2.03 48.32 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.26 -14.65 8.21 84.04 0.69 -13.96 16 8 H 0.05 2.87 7.14 -2.91 -0.02 2.85 16 9 N -0.55 -27.64 2.78 -682.34 -1.90 -29.54 16 10 C 0.21 9.88 5.86 85.63 0.50 10.38 16 11 C 0.00 -0.11 6.90 24.88 0.17 0.06 16 12 C -0.22 -8.35 10.78 22.13 0.24 -8.11 16 13 C -0.18 -6.15 10.26 22.40 0.23 -5.92 16 14 C -0.03 -1.12 7.03 24.27 0.17 -0.95 16 15 C -0.03 -1.00 5.87 -20.10 -0.12 -1.12 16 16 C -0.11 -2.63 9.56 22.53 0.22 -2.41 16 17 C -0.11 -2.07 10.03 22.23 0.22 -1.85 16 18 C -0.12 -2.24 10.04 22.33 0.22 -2.02 16 19 C -0.12 -3.05 10.03 22.23 0.22 -2.83 16 20 C -0.14 -4.66 9.72 22.53 0.22 -4.44 16 21 O -0.20 -9.42 10.41 -6.31 -0.07 -9.48 16 22 C 0.10 4.23 6.60 44.99 0.30 4.53 16 23 C -0.19 -7.21 9.78 30.62 0.30 -6.91 16 24 C -0.21 -7.70 10.15 30.62 0.31 -7.39 16 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.09 3.61 8.04 -2.39 -0.02 3.59 16 27 H 0.08 4.53 5.34 -2.39 -0.01 4.52 16 28 H 0.16 5.11 8.06 -2.91 -0.02 5.09 16 29 H 0.18 4.46 7.26 -2.91 -0.02 4.44 16 30 H 0.15 2.87 6.99 -2.91 -0.02 2.85 16 31 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.10 3.75 7.91 -2.91 -0.02 3.73 16 35 H 0.12 4.14 8.11 -2.39 -0.02 4.12 16 36 H 0.07 3.13 6.80 -2.39 -0.02 3.11 16 37 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 38 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -67.80 333.81 5.68 -62.12 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 1.05 Total: 24.84 kcal Atomic # 6 Polarization: -48.26 SS G_CDS: 4.32 Total: -43.94 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.65 Total: -81.85 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.07 Total: -9.48 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -67.80 5.68 -62.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271117027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.741 kcal (2) G-P(sol) polarization free energy of solvation -67.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds