Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 5 5 O 1.21283 * 119.99488 * 120.00024 * 4 2 1 6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 C 1.50697 * 109.47491 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99965 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00490 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99545 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00173 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47173 * 59.99901 * 13 11 9 15 15 H 1.48497 * 109.47169 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47241 * 299.99984 * 13 11 9 17 17 C 1.50701 * 109.47327 * 239.99821 * 2 1 3 18 18 C 1.38422 * 120.02196 * 299.72350 * 17 2 1 19 19 F 1.35096 * 120.01241 * 0.02562 * 18 17 2 20 20 C 1.38470 * 119.96960 * 179.74461 * 18 17 2 21 21 C 1.38212 * 120.02766 * 0.53347 * 20 18 17 22 22 C 1.38205 * 120.04743 * 359.74170 * 21 20 18 23 23 C 1.38412 * 120.02259 * 119.99747 * 17 2 1 24 24 F 1.35099 * 120.01828 * 0.02562 * 23 17 2 25 25 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 27 27 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 28 28 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 30 30 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 31 31 H 1.09004 * 109.47066 * 299.99732 * 8 7 6 32 32 H 1.09000 * 109.47665 * 59.99541 * 8 7 6 33 33 H 0.97004 * 119.99855 * 180.02562 * 12 11 9 34 34 H 1.08001 * 119.98393 * 180.27154 * 20 18 17 35 35 H 1.07997 * 119.97270 * 179.76575 * 21 20 18 36 36 H 1.07996 * 119.98802 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.2001 -0.9368 3.6508 8 6 1.6947 -0.2124 4.9000 9 6 2.2016 -0.9194 6.1305 10 1 2.8219 -1.7979 6.0315 11 6 1.8735 -0.4447 7.3827 12 7 1.1186 0.6253 7.5033 13 14 2.5014 -1.3216 8.9079 14 1 3.9864 -1.3225 8.9023 15 1 2.0119 -0.6176 10.1204 16 1 2.0055 -2.7213 8.9136 17 6 2.0325 -0.7104 -1.2304 18 6 1.7031 -2.0373 -1.4470 19 9 0.9306 -2.6960 -0.5556 20 6 2.1609 -2.6875 -2.5806 21 6 2.9555 -2.0154 -3.4901 22 6 3.2897 -0.6922 -3.2719 23 6 2.8282 -0.0382 -2.1419 24 9 3.1554 1.2551 -1.9287 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5137 -0.8900 28 1 1.1493 0.5390 2.5436 29 1 1.8373 -1.9647 3.6551 30 1 3.2901 -0.9363 3.6466 31 1 2.0575 0.8155 4.8957 32 1 0.6047 -0.2128 4.9043 33 1 0.8880 0.9595 8.3843 34 1 1.9004 -3.7216 -2.7520 35 1 3.3152 -2.5245 -4.3720 36 1 3.9103 -0.1678 -3.9833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273061921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = -117.792069 kcal Electronic energy + Delta-G solvation = -21854.333829 eV Core-core repulsion = 18166.919500 eV Total energy + Delta-G solvation = -3687.414329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.18627 -48.97743 -39.83484 -38.56177 -34.91622 -34.33677 -32.81064 -30.45650 -30.16193 -29.08646 -25.31976 -24.41684 -23.02181 -22.37988 -20.92743 -19.82381 -18.25806 -17.72481 -16.71769 -16.48414 -16.08179 -15.81068 -15.65233 -15.32839 -15.11223 -14.94289 -14.52815 -14.46547 -13.91684 -13.49469 -13.21583 -12.89732 -12.58429 -12.30304 -12.27900 -12.24502 -12.05871 -11.61539 -11.20787 -11.06017 -11.00012 -10.65249 -10.31582 -9.79148 -9.47950 -9.25604 -8.97876 -8.87620 -8.53818 -8.34836 -6.09003 -4.11883 0.77932 0.84316 2.97759 3.13700 3.31636 3.35297 3.38457 3.68894 3.76495 4.18213 4.26810 4.41595 4.49744 4.58195 4.92990 4.99858 5.04707 5.16407 5.27966 5.50834 5.59138 5.61245 5.73762 5.79851 5.87460 5.94641 6.05401 6.34300 6.35659 6.59435 6.74238 6.91397 7.51523 7.61928 7.88915 7.99498 8.27880 8.62954 8.93792 9.52848 11.02593 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031655 B = 0.003399 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.332091 B = 8235.419596 C = 8471.110512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 H 0.111 0.889 4 C 0.512 3.488 5 O -0.541 6.541 6 N -0.718 5.718 7 C 0.122 3.878 8 C 0.013 3.987 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.136 4.136 18 C 0.165 3.835 19 F -0.119 7.119 20 C -0.170 4.170 21 C -0.063 4.063 22 C -0.170 4.170 23 C 0.134 3.866 24 F -0.130 7.130 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.398 0.602 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 -0.883 -23.429 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 H 0.129 0.871 4 C 0.297 3.703 5 O -0.419 6.419 6 N -0.368 5.368 7 C 0.000 4.000 8 C -0.024 4.024 9 C -0.561 4.561 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.138 4.138 18 C 0.145 3.855 19 F -0.098 7.098 20 C -0.189 4.189 21 C -0.082 4.082 22 C -0.189 4.189 23 C 0.114 3.886 24 F -0.109 7.109 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.231 0.769 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.013 -1.460 -23.283 23.328 hybrid contribution 0.033 0.155 1.209 1.219 sum 0.020 -1.304 -22.074 22.112 Atomic orbital electron populations 1.21857 0.91435 1.03876 1.03215 1.20217 0.98332 1.00745 0.90369 0.87071 1.20172 0.80784 0.84793 0.84566 1.90682 1.38215 1.26259 1.86735 1.46250 1.52634 1.31906 1.05988 1.21733 0.98439 0.96368 0.83427 1.19318 0.96980 0.96007 0.90135 1.21014 1.32045 1.12582 0.90465 0.92316 1.24993 0.94998 0.95017 0.99247 1.69946 1.36715 1.22799 1.23866 0.86566 0.79291 0.79748 0.81900 1.20109 1.21231 1.20092 1.19416 1.02486 0.94195 0.97711 1.17094 0.91879 0.89009 0.87479 1.91534 1.71529 1.80133 1.66563 1.21201 1.01653 1.01634 0.94374 1.20803 0.95473 0.93203 0.98680 1.21111 1.03969 0.96056 0.97768 1.17156 0.97148 0.79104 0.95152 1.91509 1.90713 1.33907 1.94741 0.91126 0.90825 0.91380 0.76866 0.92507 0.92598 0.95942 0.95911 0.92783 0.84070 0.84053 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.88 37.16 0.33 -1.32 16 2 C -0.08 -1.02 2.79 -92.92 -0.26 -1.28 16 3 H 0.11 1.35 7.13 -51.93 -0.37 0.98 16 4 C 0.51 9.06 6.59 -10.98 -0.07 8.99 16 5 O -0.54 -11.47 14.53 5.55 0.08 -11.39 16 6 N -0.72 -12.90 5.45 -60.30 -0.33 -13.23 16 7 C 0.12 2.67 5.61 -4.04 -0.02 2.64 16 8 C 0.01 0.33 5.09 -27.89 -0.14 0.18 16 9 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 10 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 13 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.14 -1.81 4.41 -104.49 -0.46 -2.28 16 18 C 0.17 2.21 6.13 -39.43 -0.24 1.97 16 19 F -0.12 -1.83 13.80 2.25 0.03 -1.80 16 20 C -0.17 -1.73 10.02 -39.51 -0.40 -2.13 16 21 C -0.06 -0.52 10.04 -39.60 -0.40 -0.92 16 22 C -0.17 -1.56 10.02 -39.50 -0.40 -1.96 16 23 C 0.13 1.59 7.25 -39.43 -0.29 1.30 16 24 F -0.13 -1.58 16.19 2.25 0.04 -1.54 16 25 H 0.07 0.87 6.33 -51.93 -0.33 0.54 16 26 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.40 6.15 7.89 -40.82 -0.32 5.83 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -32.60 315.37 -6.80 -39.41 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.34 Total: 0.99 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.76 Total: -8.17 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.41 Total: -38.76 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.60 -6.80 -39.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273061921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.386 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds