Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 5 5 O 1.21283 * 119.99488 * 120.00024 * 4 2 1 6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 C 1.50697 * 109.47491 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99965 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00490 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99545 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00173 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47173 * 59.99901 * 13 11 9 15 15 H 1.48497 * 109.47169 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47241 * 299.99984 * 13 11 9 17 17 C 1.50701 * 109.47327 * 239.99821 * 2 1 3 18 18 C 1.38422 * 120.02196 * 299.72350 * 17 2 1 19 19 F 1.35096 * 120.01241 * 0.02562 * 18 17 2 20 20 C 1.38470 * 119.96960 * 179.74461 * 18 17 2 21 21 C 1.38212 * 120.02766 * 0.53347 * 20 18 17 22 22 C 1.38205 * 120.04743 * 359.74170 * 21 20 18 23 23 C 1.38412 * 120.02259 * 119.99747 * 17 2 1 24 24 F 1.35099 * 120.01828 * 0.02562 * 23 17 2 25 25 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 27 27 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 28 28 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 30 30 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 31 31 H 1.09004 * 109.47066 * 299.99732 * 8 7 6 32 32 H 1.09000 * 109.47665 * 59.99541 * 8 7 6 33 33 H 0.97004 * 119.99855 * 180.02562 * 12 11 9 34 34 H 1.08001 * 119.98393 * 180.27154 * 20 18 17 35 35 H 1.07997 * 119.97270 * 179.76575 * 21 20 18 36 36 H 1.07996 * 119.98802 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.2001 -0.9368 3.6508 8 6 1.6947 -0.2124 4.9000 9 6 2.2016 -0.9194 6.1305 10 1 2.8219 -1.7979 6.0315 11 6 1.8735 -0.4447 7.3827 12 7 1.1186 0.6253 7.5033 13 14 2.5014 -1.3216 8.9079 14 1 3.9864 -1.3225 8.9023 15 1 2.0119 -0.6176 10.1204 16 1 2.0055 -2.7213 8.9136 17 6 2.0325 -0.7104 -1.2304 18 6 1.7031 -2.0373 -1.4470 19 9 0.9306 -2.6960 -0.5556 20 6 2.1609 -2.6875 -2.5806 21 6 2.9555 -2.0154 -3.4901 22 6 3.2897 -0.6922 -3.2719 23 6 2.8282 -0.0382 -2.1419 24 9 3.1554 1.2551 -1.9287 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5137 -0.8900 28 1 1.1493 0.5390 2.5436 29 1 1.8373 -1.9647 3.6551 30 1 3.2901 -0.9363 3.6466 31 1 2.0575 0.8155 4.8957 32 1 0.6047 -0.2128 4.9043 33 1 0.8880 0.9595 8.3843 34 1 1.9004 -3.7216 -2.7520 35 1 3.3152 -2.5245 -4.3720 36 1 3.9103 -0.1678 -3.9833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273061921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = -138.024901 kcal Electronic energy + Delta-G solvation = -21855.211191 eV Core-core repulsion = 18166.919500 eV Total energy + Delta-G solvation = -3688.291691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.06183 -49.99353 -41.11506 -39.54947 -36.65993 -35.44304 -34.78083 -31.72031 -31.24346 -30.33623 -27.01698 -25.67691 -23.88081 -23.61317 -22.68229 -21.16470 -19.13947 -18.85678 -18.47034 -17.78871 -17.22490 -16.87614 -16.58902 -16.52320 -16.48815 -16.31016 -16.21013 -15.43367 -15.15098 -14.87773 -14.68210 -14.29717 -13.76295 -13.60720 -13.32153 -13.24538 -13.09817 -12.93497 -12.87812 -12.57166 -12.52013 -12.24666 -11.96949 -11.67532 -11.49793 -10.86061 -10.61963 -10.07016 -9.88775 -9.70605 -8.25811 -6.36706 -0.03534 0.02458 1.40415 1.42907 1.50958 1.56929 2.13638 2.39212 2.50548 2.92597 3.08730 3.24167 3.43563 3.58011 3.85080 3.90628 4.05349 4.20573 4.25463 4.44898 4.45030 4.66155 4.72743 4.81004 4.84057 4.90320 5.03030 5.07511 5.15767 5.21691 5.24838 5.45435 5.54867 5.75765 5.80536 6.13686 6.54576 6.75850 7.19544 7.32577 8.85888 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031655 B = 0.003399 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.332091 B = 8235.419596 C = 8471.110512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 H 0.125 0.875 4 C 0.510 3.490 5 O -0.578 6.578 6 N -0.714 5.714 7 C 0.142 3.858 8 C 0.024 3.976 9 C -0.550 4.550 10 H 0.058 0.942 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.966 3.034 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.268 1.268 17 C -0.159 4.159 18 C 0.130 3.870 19 F -0.141 7.141 20 C -0.169 4.169 21 C -0.049 4.049 22 C -0.161 4.161 23 C 0.117 3.883 24 F -0.136 7.136 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.410 0.590 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.267 0.733 34 H 0.160 0.840 35 H 0.185 0.815 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -1.136 -25.147 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 H 0.143 0.857 4 C 0.297 3.703 5 O -0.458 6.458 6 N -0.365 5.365 7 C 0.019 3.981 8 C -0.013 4.013 9 C -0.588 4.588 10 H 0.076 0.924 11 C -0.191 4.191 12 N -0.565 5.565 13 Si 0.790 3.210 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.193 1.193 17 C -0.162 4.162 18 C 0.111 3.889 19 F -0.120 7.120 20 C -0.188 4.188 21 C -0.067 4.067 22 C -0.179 4.179 23 C 0.097 3.903 24 F -0.115 7.115 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.246 0.754 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.178 0.822 35 H 0.203 0.797 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.615 -1.692 -25.023 25.087 hybrid contribution -0.141 0.229 1.638 1.660 sum 0.474 -1.463 -23.385 23.435 Atomic orbital electron populations 1.21862 0.89819 1.03467 1.04774 1.20192 0.99608 1.00688 0.88358 0.85713 1.20946 0.79742 0.84317 0.85289 1.90651 1.39803 1.27990 1.87310 1.46080 1.52922 1.32215 1.05300 1.21217 0.97518 0.95576 0.83819 1.19122 0.95907 0.95311 0.91001 1.21433 1.32455 1.12993 0.91947 0.92416 1.25875 0.95027 0.95708 1.02486 1.70050 1.37585 1.24032 1.24850 0.85491 0.78930 0.78719 0.77878 1.19343 1.20429 1.19333 1.19500 1.03915 0.94647 0.98099 1.17535 0.93261 0.89527 0.88597 1.91472 1.72359 1.80542 1.67589 1.21567 1.01149 1.02613 0.93472 1.21320 0.93543 0.92709 0.99085 1.21550 1.02977 0.96454 0.96932 1.17413 0.97645 0.79121 0.96096 1.91490 1.90800 1.34273 1.94899 0.92494 0.90087 0.88964 0.75358 0.93740 0.93709 0.97264 0.97228 0.92466 0.82197 0.79741 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.88 71.98 0.64 -2.49 16 2 C -0.07 -1.81 2.79 -12.28 -0.03 -1.84 16 3 H 0.13 2.95 7.13 -2.39 -0.02 2.94 16 4 C 0.51 18.41 6.59 87.66 0.58 18.99 16 5 O -0.58 -25.18 14.53 -3.04 -0.04 -25.23 16 6 N -0.71 -26.25 5.45 -463.07 -2.52 -28.77 16 7 C 0.14 6.40 5.61 86.38 0.48 6.88 16 8 C 0.02 1.24 5.09 29.85 0.15 1.39 16 9 C -0.55 -31.34 9.11 25.60 0.23 -31.11 16 10 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 11 C 0.01 0.45 5.46 84.65 0.46 0.92 16 12 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 13 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 C -0.16 -4.18 4.41 -19.78 -0.09 -4.27 16 18 C 0.13 3.45 6.13 22.37 0.14 3.59 16 19 F -0.14 -4.47 13.80 44.97 0.62 -3.85 16 20 C -0.17 -3.12 10.02 22.32 0.22 -2.90 16 21 C -0.05 -0.62 10.04 22.26 0.22 -0.40 16 22 C -0.16 -2.44 10.02 22.32 0.22 -2.21 16 23 C 0.12 2.59 7.25 22.37 0.16 2.75 16 24 F -0.14 -3.13 16.19 44.97 0.73 -2.40 16 25 H 0.06 1.42 6.33 -2.39 -0.02 1.41 16 26 H 0.08 1.62 7.56 -2.39 -0.02 1.60 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.41 12.87 7.89 -92.71 -0.73 12.14 16 29 H 0.04 2.09 8.14 -2.38 -0.02 2.08 16 30 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 36 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -71.76 315.37 4.87 -66.89 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.38 Total: 12.45 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 3.40 Total: -10.71 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.24 Total: -83.30 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.04 Total: -25.23 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 1.35 Total: -6.25 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.76 4.87 -66.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273061921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.130 kcal (2) G-P(sol) polarization free energy of solvation -71.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds