Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 C 1.50699 * 109.46813 * 239.99586 * 2 1 3 5 5 O 1.21287 * 120.00050 * 240.00345 * 4 2 1 6 6 N 1.34772 * 120.00038 * 60.00550 * 4 2 1 7 7 C 1.46503 * 120.00135 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47185 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.46982 * 180.02562 * 8 7 6 10 10 H 1.07991 * 120.00219 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99809 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00055 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99890 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47564 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47460 * 120.00267 * 13 11 9 16 16 H 1.48499 * 109.47149 * 240.00195 * 13 11 9 17 17 C 1.50698 * 109.46867 * 120.00001 * 2 1 3 18 18 C 1.38415 * 120.02708 * 239.99837 * 17 2 1 19 19 F 1.35099 * 120.00946 * 359.97438 * 18 17 2 20 20 C 1.38474 * 119.97981 * 179.97438 * 18 17 2 21 21 C 1.38210 * 120.02023 * 0.28104 * 20 18 17 22 22 C 1.38201 * 120.05118 * 359.44081 * 21 20 18 23 23 C 1.38420 * 120.02535 * 59.97344 * 17 2 1 24 24 F 1.35097 * 120.01373 * 0.02562 * 23 17 2 25 25 H 1.08996 * 109.47333 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47040 * 300.00672 * 1 2 3 27 27 H 1.09001 * 109.46748 * 60.00121 * 1 2 3 28 28 H 0.96999 * 119.99974 * 359.97438 * 6 4 2 29 29 H 1.09002 * 109.47379 * 300.00220 * 7 6 4 30 30 H 1.09004 * 109.46968 * 59.99702 * 7 6 4 31 31 H 1.09000 * 109.47563 * 299.99728 * 8 7 6 32 32 H 1.09004 * 109.47324 * 60.00584 * 8 7 6 33 33 H 0.97001 * 119.99666 * 179.97438 * 12 11 9 34 34 H 1.08002 * 119.98641 * 179.97438 * 20 18 17 35 35 H 1.08000 * 119.96986 * 179.70463 * 21 20 18 36 36 H 1.08002 * 119.98829 * 180.25980 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6967 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1955 -0.9405 -3.6507 8 6 1.6849 -0.2197 -4.8999 9 6 2.1872 -0.9303 -6.1304 10 1 2.8080 -1.8083 -6.0313 11 6 1.8541 -0.4593 -7.3826 12 7 1.0984 0.6103 -7.5033 13 14 2.4772 -1.3396 -8.9078 14 1 3.3020 -2.5064 -8.5037 15 1 1.3224 -1.8067 -9.7164 16 1 3.3020 -0.4059 -9.7160 17 6 2.0323 -0.7104 1.2305 18 6 2.8281 -0.0383 2.1420 19 9 3.1554 1.2550 1.9286 20 6 3.2887 -0.6919 3.2726 21 6 2.9587 -2.0166 3.4881 22 6 2.1595 -2.6871 2.5816 23 6 1.6977 -2.0355 1.4503 24 9 0.9211 -2.6927 0.5615 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.1489 0.5384 -2.5435 29 1 3.2855 -0.9402 -3.6506 30 1 1.8325 -1.9683 -3.6508 31 1 0.5949 -0.2204 -4.8999 32 1 2.0477 0.8082 -4.9001 33 1 0.8644 0.9419 -8.3844 34 1 3.9100 -0.1677 3.9836 35 1 3.3223 -2.5269 4.3677 36 1 1.8988 -3.7210 2.7531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273061925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = -117.850208 kcal Electronic energy + Delta-G solvation = -21853.717207 eV Core-core repulsion = 18166.300356 eV Total energy + Delta-G solvation = -3687.416850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.18645 -48.98043 -39.83490 -38.56228 -34.91645 -34.33828 -32.81241 -30.45666 -30.16250 -29.08725 -25.32190 -24.41851 -23.02208 -22.38242 -20.92929 -19.82491 -18.25916 -17.72540 -16.71778 -16.48772 -16.08490 -15.81189 -15.65309 -15.33103 -15.11434 -14.94317 -14.52912 -14.45824 -13.91550 -13.49702 -13.21612 -12.89856 -12.58468 -12.31334 -12.28321 -12.24610 -12.06051 -11.61423 -11.19446 -11.06793 -11.02419 -10.62080 -10.33243 -9.78502 -9.47947 -9.23647 -8.97688 -8.87735 -8.54446 -8.35288 -6.09454 -4.12121 0.77966 0.84148 2.97691 3.13605 3.28518 3.36019 3.41150 3.68956 3.76427 4.18131 4.26738 4.41501 4.49651 4.58136 4.92961 4.99807 5.04623 5.16390 5.27745 5.50787 5.59110 5.61191 5.73698 5.79754 5.87372 5.94601 6.05473 6.34284 6.35538 6.59353 6.74169 6.91317 7.51745 7.61735 7.88850 7.99460 8.27676 8.62935 8.94078 9.52773 11.02212 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031666 B = 0.003399 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.016572 B = 8236.423982 C = 8472.176494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 H 0.111 0.889 4 C 0.512 3.488 5 O -0.541 6.541 6 N -0.718 5.718 7 C 0.122 3.878 8 C 0.012 3.988 9 C -0.521 4.521 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.136 4.136 18 C 0.134 3.866 19 F -0.130 7.130 20 C -0.170 4.170 21 C -0.064 4.064 22 C -0.169 4.169 23 C 0.165 3.835 24 F -0.120 7.120 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.398 0.602 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 -0.866 23.456 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 H 0.129 0.871 4 C 0.297 3.703 5 O -0.419 6.419 6 N -0.368 5.368 7 C 0.000 4.000 8 C -0.025 4.025 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.138 4.138 18 C 0.114 3.886 19 F -0.109 7.109 20 C -0.189 4.189 21 C -0.082 4.082 22 C -0.188 4.188 23 C 0.145 3.855 24 F -0.098 7.098 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.231 0.769 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.056 -1.449 23.315 23.360 hybrid contribution 0.011 0.172 -1.219 1.232 sum 0.067 -1.276 22.095 22.132 Atomic orbital electron populations 1.21860 0.91436 1.03893 1.03218 1.20214 0.98328 1.00745 0.90372 0.87069 1.20172 0.80791 0.84787 0.84564 1.90683 1.38211 1.26263 1.86738 1.46251 1.52709 1.31829 1.05991 1.21734 0.98497 0.96310 0.83421 1.19332 0.96968 0.96051 0.90169 1.21090 1.31871 1.12542 0.90432 0.92206 1.24998 0.95014 0.95031 0.99275 1.69965 1.36758 1.22940 1.23640 0.86457 0.78674 0.79721 0.82724 1.19580 1.20925 1.20926 1.19415 1.02430 0.94238 0.97697 1.17157 0.97190 0.79108 0.95116 1.91509 1.90718 1.33909 1.94737 1.21113 1.03987 0.96030 0.97766 1.20802 0.95482 0.93191 0.98691 1.21200 1.01545 1.01626 0.94465 1.17099 0.91808 0.89054 0.87540 1.91533 1.71308 1.80200 1.66727 0.91108 0.91380 0.90827 0.76868 0.92589 0.92512 0.95901 0.95928 0.92902 0.84102 0.84052 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.88 37.16 0.33 -1.32 16 2 C -0.08 -1.01 2.79 -92.92 -0.26 -1.27 16 3 H 0.11 1.35 7.13 -51.93 -0.37 0.98 16 4 C 0.51 9.06 6.60 -10.99 -0.07 8.99 16 5 O -0.54 -11.47 14.56 5.55 0.08 -11.39 16 6 N -0.72 -12.89 5.45 -60.29 -0.33 -13.22 16 7 C 0.12 2.67 5.61 -4.04 -0.02 2.64 16 8 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 9 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 10 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 13 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C -0.14 -1.81 4.41 -104.49 -0.46 -2.27 16 18 C 0.13 1.58 7.25 -39.43 -0.29 1.30 16 19 F -0.13 -1.58 16.19 2.25 0.04 -1.54 16 20 C -0.17 -1.56 10.03 -39.50 -0.40 -1.96 16 21 C -0.06 -0.52 10.04 -39.61 -0.40 -0.92 16 22 C -0.17 -1.73 10.02 -39.51 -0.40 -2.12 16 23 C 0.16 2.20 6.13 -39.43 -0.24 1.96 16 24 F -0.12 -1.83 13.81 2.25 0.03 -1.80 16 25 H 0.07 0.87 6.31 -51.93 -0.33 0.54 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 28 H 0.40 6.14 7.89 -40.82 -0.32 5.82 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -32.63 315.38 -6.80 -39.44 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.34 Total: 0.92 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.76 Total: -8.16 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.41 Total: -38.72 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.34 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.63 -6.80 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273061925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.415 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds