Wall clock time and date at job start Tue Mar 31 2020 05:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76200 * 103.00368 * 2 1 4 4 C 1.38887 * 120.08370 * 0.02562 * 3 2 1 5 5 C 1.38133 * 119.94567 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.11530 * 359.97438 * 5 4 3 7 7 C 1.50691 * 119.91458 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47291 * 340.00654 * 7 6 5 9 9 C 1.53006 * 109.47160 * 100.00186 * 7 6 5 10 10 N 1.46900 * 109.47422 * 220.00333 * 7 6 5 11 11 C 1.46894 * 111.00559 * 155.00112 * 10 7 6 12 12 C 1.52997 * 109.47515 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.38310 * 120.17069 * 0.27550 * 6 5 4 22 22 C 1.38267 * 120.05365 * 359.45607 * 21 6 5 23 23 F 1.35099 * 120.05873 * 180.24606 * 22 21 6 24 24 H 1.08998 * 109.47201 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46662 * 300.00044 * 1 2 3 26 26 H 1.09003 * 109.47038 * 59.99510 * 1 2 3 27 27 H 1.08005 * 120.02913 * 0.04082 * 4 3 2 28 28 H 1.07996 * 119.94548 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47152 * 60.00176 * 9 7 6 30 30 H 1.08994 * 109.47007 * 180.02562 * 9 7 6 31 31 H 1.08999 * 109.46772 * 300.00090 * 9 7 6 32 32 H 1.00899 * 110.99900 * 31.04164 * 10 7 6 33 33 H 1.09002 * 109.47104 * 59.99767 * 11 10 7 34 34 H 1.08998 * 109.46828 * 300.00600 * 11 10 7 35 35 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 38 38 H 1.08002 * 119.97106 * 179.70049 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1962 2.6656 0.0005 5 6 1.5102 4.0107 0.0000 6 6 2.8329 4.4144 -0.0005 7 6 3.1703 5.8831 -0.0005 8 1 2.3104 6.4535 -0.3515 9 6 3.5294 6.3239 1.4200 10 7 4.3136 6.1229 -0.8913 11 6 4.3133 7.5053 -1.3879 12 6 5.5154 7.7162 -2.3105 13 6 5.5147 9.1343 -2.8204 14 1 4.7351 9.8171 -2.5164 15 6 6.5100 9.5605 -3.6741 16 7 7.4596 8.7292 -4.0438 17 14 6.5095 11.3185 -4.3055 18 1 5.3425 12.0456 -3.7446 19 1 7.7627 11.9956 -3.8855 20 1 6.4233 11.3119 -5.7880 21 6 3.8468 3.4737 -0.0063 22 6 3.5404 2.1254 -0.0002 23 9 4.5308 1.2065 -0.0008 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.1627 2.3519 0.0016 28 1 0.7215 4.7485 0.0008 29 1 4.3893 5.7535 1.7710 30 1 3.7730 7.3863 1.4200 31 1 2.6810 6.1460 2.0809 32 1 4.3209 5.4641 -1.6556 33 1 4.3762 8.1940 -0.5453 34 1 3.3933 7.6922 -1.9418 35 1 5.4520 7.0275 -3.1530 36 1 6.4355 7.5292 -1.7568 37 1 8.1596 9.0289 -4.6448 38 1 4.8786 3.7926 -0.0116 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273164603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:58 Heat of formation + Delta-G solvation = -50.169178 kcal Electronic energy + Delta-G solvation = -19207.055494 eV Core-core repulsion = 16088.786689 eV Total energy + Delta-G solvation = -3118.268805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.98319 -40.51027 -37.76678 -35.37205 -33.41327 -31.89198 -30.91820 -29.70293 -29.51582 -26.30226 -24.76547 -23.76198 -22.33010 -21.54603 -19.04124 -18.50059 -18.02494 -17.52971 -16.86138 -16.76830 -16.43889 -15.92151 -15.59861 -15.26314 -15.12728 -14.64686 -14.54699 -14.25100 -14.17525 -13.95273 -13.48920 -13.26447 -13.19167 -12.96359 -12.89480 -12.79833 -12.52060 -12.37810 -12.03162 -11.72258 -11.40260 -11.28873 -11.20379 -10.69738 -10.56879 -9.91730 -9.31381 -8.45943 -8.19969 -6.31480 -0.08444 0.11893 0.42494 1.40732 1.41138 1.41269 1.54467 2.39324 2.42139 3.09245 3.13767 3.28003 3.59015 3.73792 4.09975 4.19979 4.27618 4.29430 4.37545 4.40668 4.55443 4.60439 4.65997 4.77897 4.86776 4.90087 4.92836 5.01662 5.06859 5.11580 5.34248 5.41765 5.48955 5.68204 5.73938 5.80481 6.14541 6.29031 6.49514 6.86662 7.38046 8.92403 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.002953 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.711618 B = 9481.093991 C = 9758.978588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.146 6.146 3 C -0.131 4.131 4 C -0.101 4.101 5 C -0.097 4.097 6 C -0.064 4.064 7 C 0.123 3.877 8 H 0.065 0.935 9 C -0.131 4.131 10 N -0.692 5.692 11 C 0.086 3.914 12 C 0.031 3.969 13 C -0.541 4.541 14 H 0.063 0.937 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.124 4.124 22 C 0.088 3.912 23 F -0.144 7.144 24 H 0.128 0.872 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.337 0.663 33 H 0.063 0.937 34 H 0.022 0.978 35 H -0.012 1.012 36 H -0.007 1.007 37 H 0.263 0.737 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.639 -14.889 10.863 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.096 5.904 3 C -0.244 4.244 4 C -0.124 4.124 5 C -0.117 4.117 6 C -0.067 4.067 7 C 0.014 3.986 8 H 0.083 0.917 9 C -0.189 4.189 10 N -0.324 5.324 11 C -0.042 4.042 12 C -0.007 4.007 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.183 1.183 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.145 4.145 22 C 0.063 3.937 23 F -0.123 7.123 24 H 0.146 0.854 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.183 0.817 28 H 0.179 0.821 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.155 0.845 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.007 0.993 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.387 -15.874 11.291 26.111 hybrid contribution -0.391 1.560 -1.228 2.023 sum -17.779 -14.314 10.063 24.945 Atomic orbital electron populations 1.23851 0.90516 1.08897 1.07070 1.85891 1.10918 1.01273 1.92364 1.21970 0.94675 0.99257 1.08490 1.21341 0.98913 0.91934 1.00200 1.21328 0.95760 0.96218 0.98355 1.19894 0.93205 0.94703 0.98917 1.20538 0.92323 0.90554 0.95196 0.91746 1.21767 1.01929 1.01167 0.94057 1.60653 1.43608 1.04870 1.23249 1.21812 0.96962 0.88534 0.96921 1.18927 0.93473 0.95133 0.93147 1.21650 1.10454 0.97879 1.28017 0.91913 1.26000 0.95020 1.02311 0.96607 1.70124 1.14367 1.37328 1.35513 0.85366 0.78397 0.79094 0.77973 1.18330 1.20483 1.20432 1.21000 1.01702 0.90061 1.01730 1.17349 0.83821 0.86549 1.05971 1.91473 1.60801 1.65948 1.94061 0.85417 0.88086 0.88383 0.81686 0.82147 0.92951 0.92802 0.90333 0.84494 0.91870 0.95936 0.99343 0.98867 0.92809 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.15 113.37 1.04 -0.11 16 2 S -0.15 -2.84 22.17 -56.49 -1.25 -4.09 16 3 C -0.13 -2.93 6.11 22.64 0.14 -2.80 16 4 C -0.10 -1.70 9.36 22.40 0.21 -1.49 16 5 C -0.10 -1.73 9.66 22.26 0.21 -1.52 16 6 C -0.06 -1.52 4.72 -19.84 -0.09 -1.61 16 7 C 0.12 3.22 2.82 44.17 0.12 3.34 16 8 H 0.06 1.56 7.66 -2.39 -0.02 1.54 16 9 C -0.13 -3.19 9.39 71.98 0.68 -2.51 16 10 N -0.69 -23.89 5.68 -495.48 -2.82 -26.71 16 11 C 0.09 3.53 5.42 86.30 0.47 4.00 16 12 C 0.03 1.64 5.23 29.85 0.16 1.80 16 13 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 15 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 16 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 17 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 C -0.12 -3.40 8.97 22.29 0.20 -3.20 16 22 C 0.09 2.42 7.28 22.49 0.16 2.59 16 23 F -0.14 -4.43 16.76 44.97 0.75 -3.67 16 24 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.10 0.59 7.75 -2.39 -0.02 0.58 16 26 H 0.10 0.65 7.75 -2.39 -0.02 0.63 16 27 H 0.17 1.62 5.88 -2.91 -0.02 1.60 16 28 H 0.16 1.95 8.03 -2.91 -0.02 1.93 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.40 7.45 -2.39 -0.02 1.38 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.34 11.85 7.98 -89.70 -0.72 11.13 16 33 H 0.06 2.55 7.44 -2.39 -0.02 2.53 16 34 H 0.02 0.89 8.05 -2.39 -0.02 0.87 16 35 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.14 4.05 7.70 -2.91 -0.02 4.03 16 Total: -1.00 -68.24 333.89 3.33 -64.91 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.34 Total: 12.28 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.99 Total: -31.78 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -2.53 Total: -84.00 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.75 Total: -3.67 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -1.25 Total: -4.09 kcal Total: -68.24 3.33 -64.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273164603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.744 kcal (2) G-P(sol) polarization free energy of solvation -68.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds