Wall clock time and date at job start Tue Mar 31 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 C 1.52990 * 109.47398 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47398 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99463 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00445 * 180.02562 * 9 8 7 12 12 N 1.31524 * 120.00004 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00395 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46636 * 59.99870 * 13 11 9 15 15 H 1.48498 * 109.47594 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47239 * 300.00311 * 13 11 9 17 17 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 18 18 C 1.38232 * 119.98781 * 264.72362 * 17 2 1 19 19 C 1.38181 * 120.05084 * 179.76374 * 18 17 2 20 20 C 1.38488 * 120.02695 * 0.50990 * 19 18 17 21 21 F 1.35097 * 120.01673 * 179.76500 * 20 19 18 22 22 C 1.38406 * 119.97265 * 359.74431 * 20 19 18 23 23 C 1.38437 * 119.94848 * 0.02562 * 22 20 19 24 24 F 1.35096 * 120.01055 * 180.02562 * 23 22 20 25 25 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 27 27 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 28 28 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 29 29 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 30 30 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 31 31 H 1.08998 * 109.47508 * 300.00200 * 8 7 5 32 32 H 1.09011 * 109.47182 * 60.00188 * 8 7 5 33 33 H 0.96991 * 119.99897 * 179.97438 * 12 11 9 34 34 H 1.08005 * 119.97290 * 0.02562 * 18 17 2 35 35 H 1.08007 * 119.98577 * 180.25538 * 19 18 17 36 36 H 1.07999 * 120.02429 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8638 1.1599 2.4102 7 6 2.6605 -0.7257 3.5847 8 6 2.7167 0.2586 4.7546 9 6 3.2255 -0.4501 5.9834 10 1 3.4827 -1.4979 5.9348 11 6 3.3618 0.2388 7.1699 12 7 3.0481 1.5147 7.2292 13 14 3.9918 -0.6398 8.6932 14 1 5.3525 -1.1731 8.4297 15 1 4.0464 0.3156 9.8287 16 1 3.0781 -1.7602 9.0318 17 6 2.0323 -0.7104 -1.2305 18 6 2.3665 -2.0502 -1.1667 19 6 2.8226 -2.7041 -2.2953 20 6 2.9555 -2.0150 -3.4893 21 9 3.4060 -2.6534 -4.5914 22 6 2.6263 -0.6722 -3.5530 23 6 2.1649 -0.0194 -2.4228 24 9 1.8427 1.2912 -2.4838 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 1.1526 29 1 1.9894 -1.5476 3.8337 30 1 3.6590 -1.1179 3.3911 31 1 3.3876 1.0808 4.5059 32 1 1.7180 0.6504 4.9481 33 1 3.1436 1.9993 8.0639 34 1 2.2669 -2.5874 -0.2351 35 1 3.0794 -3.7520 -2.2453 36 1 2.7293 -0.1342 -4.4838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290922973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:46 Heat of formation + Delta-G solvation = -114.734298 kcal Electronic energy + Delta-G solvation = -21271.317105 eV Core-core repulsion = 17584.035371 eV Total energy + Delta-G solvation = -3687.281734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.37437 -49.31052 -40.04431 -38.76384 -35.49649 -33.46371 -31.81933 -31.28052 -30.65999 -29.14023 -25.81686 -24.20868 -23.65789 -22.10006 -20.80198 -19.86875 -18.54132 -17.57869 -17.17147 -16.49085 -16.34121 -15.95946 -15.64645 -15.53215 -15.17431 -14.91899 -14.79467 -14.42349 -14.14282 -13.69394 -13.28020 -13.06011 -12.78799 -12.38115 -12.21994 -12.10615 -11.94872 -11.67971 -11.21750 -11.17511 -10.91741 -10.62823 -9.97043 -9.68698 -9.50361 -9.22710 -9.13496 -9.03504 -8.83953 -8.32542 -5.96685 -4.01399 0.51741 0.58130 2.91377 3.19746 3.33862 3.34593 3.39126 3.41272 3.46596 4.00513 4.14596 4.18876 4.44040 4.46780 4.73874 5.07377 5.16291 5.34551 5.37729 5.38147 5.44996 5.52014 5.56215 5.64188 5.70244 5.98285 6.12482 6.19631 6.20854 6.33659 6.63659 6.86264 7.72756 7.78257 7.84892 8.06199 8.37228 8.71663 9.06925 9.62199 11.14206 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.003071 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.395868 B = 9116.241369 C = 9699.154233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.183 3.817 3 H 0.102 0.898 4 N -0.741 5.741 5 C 0.512 3.488 6 O -0.529 6.529 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.529 4.529 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.128 4.128 18 C -0.059 4.059 19 C -0.156 4.156 20 C 0.125 3.875 21 F -0.132 7.132 22 C -0.188 4.188 23 C 0.140 3.860 24 F -0.124 7.124 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.395 0.605 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.262 0.738 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 -9.225 -22.650 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.078 3.922 3 H 0.119 0.881 4 N -0.397 5.397 5 C 0.300 3.700 6 O -0.404 6.404 7 C -0.170 4.170 8 C 0.000 4.000 9 C -0.567 4.567 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.129 4.129 18 C -0.077 4.077 19 C -0.175 4.175 20 C 0.105 3.895 21 F -0.110 7.110 22 C -0.208 4.208 23 C 0.120 3.880 24 F -0.103 7.103 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.231 0.769 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.663 -8.153 -22.500 24.080 hybrid contribution 0.518 -0.789 0.486 1.061 sum -2.145 -8.942 -22.015 23.858 Atomic orbital electron populations 1.22152 0.93799 1.02438 1.03137 1.19581 0.94460 0.97067 0.81134 0.88053 1.46404 1.69866 1.13835 1.09609 1.21614 0.76340 0.87649 0.84347 1.90681 1.48726 1.16336 1.84653 1.21880 1.00894 1.01110 0.93079 1.18897 0.98393 0.93313 0.89442 1.21179 1.44426 0.96321 0.94760 0.92653 1.25025 0.95545 0.94846 0.98949 1.69987 1.47995 1.08114 1.26713 0.86648 0.79373 0.79351 0.82530 1.20249 1.21287 1.20247 1.20190 1.02793 0.95160 0.94796 1.20682 0.95844 0.92683 0.98486 1.21201 1.03313 1.01640 0.91374 1.17294 0.98596 0.90092 0.83485 1.91537 1.86437 1.81582 1.51490 1.21022 1.05597 0.94331 0.99813 1.17024 0.99066 0.78594 0.93348 1.91559 1.89917 1.31942 1.96839 0.92193 0.90838 0.91783 0.76884 0.90144 0.90172 0.95801 0.95786 0.92871 0.83787 0.83682 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.47 37.16 0.35 -1.45 16 2 C 0.18 2.27 2.56 -69.08 -0.18 2.09 16 3 H 0.10 1.51 7.22 -51.93 -0.37 1.14 16 4 N -0.74 -9.76 4.99 -54.93 -0.27 -10.03 16 5 C 0.51 9.45 7.80 -10.98 -0.09 9.37 16 6 O -0.53 -12.14 15.64 5.55 0.09 -12.05 16 7 C -0.13 -2.54 5.64 -27.89 -0.16 -2.70 16 8 C 0.04 0.98 4.26 -27.89 -0.12 0.87 16 9 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 10 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 13 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.13 -1.28 5.06 -104.55 -0.53 -1.81 16 18 C -0.06 -0.46 9.23 -39.60 -0.37 -0.82 16 19 C -0.16 -1.14 10.02 -39.51 -0.40 -1.53 16 20 C 0.12 1.05 7.30 -39.43 -0.29 0.76 16 21 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 22 C -0.19 -1.62 10.01 -39.45 -0.39 -2.02 16 23 C 0.14 1.41 7.24 -39.43 -0.29 1.13 16 24 F -0.12 -1.41 16.57 2.25 0.04 -1.37 16 25 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.40 3.87 6.20 -40.82 -0.25 3.61 16 29 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.14 0.84 6.06 -52.48 -0.32 0.52 16 35 H 0.15 0.74 8.06 -52.48 -0.42 0.31 16 36 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -33.51 320.33 -6.71 -40.22 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.29 Total: -0.68 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.86 Total: -9.69 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.46 Total: -36.61 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.51 -6.71 -40.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290922973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.512 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds